Wall clock time and date at job start Tue Mar 31 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47518 * 274.98749 * 3 2 1 5 5 H 1.48499 * 109.47257 * 34.98878 * 3 2 1 6 6 H 1.48505 * 109.47078 * 154.98928 * 3 2 1 7 7 C 1.38808 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00380 * 186.82462 * 7 2 1 9 9 N 1.36945 * 120.00106 * 6.82356 * 7 2 1 10 10 C 1.47020 * 125.64776 * 353.84856 * 9 7 2 11 11 C 1.54316 * 107.27354 * 181.09463 * 10 9 7 12 12 H 1.09000 * 110.71929 * 140.55611 * 11 10 9 13 13 O 1.42900 * 110.72332 * 263.83277 * 11 10 9 14 14 C 1.55160 * 102.94049 * 22.19804 * 11 10 9 15 15 H 1.09000 * 111.03721 * 82.58452 * 14 11 10 16 16 C 1.53006 * 111.00227 * 206.42426 * 14 11 10 17 17 N 1.46499 * 109.47005 * 178.64750 * 16 14 11 18 18 C 1.34775 * 120.00370 * 179.97438 * 17 16 14 19 19 O 1.21582 * 119.99584 * 0.02562 * 18 17 16 20 20 C 1.47507 * 120.00470 * 179.97438 * 18 17 16 21 21 O 1.35191 * 127.15239 * 359.97438 * 20 18 17 22 22 N 1.21482 * 111.55279 * 179.97438 * 21 20 18 23 23 C 1.29066 * 111.68200 * 359.90848 * 22 21 20 24 24 C 1.35244 * 127.15423 * 179.97438 * 20 18 17 25 25 C 1.50109 * 131.34037 * 0.30139 * 24 20 18 26 26 C 1.53575 * 108.01903 * 163.72970 * 25 24 20 27 27 C 1.53005 * 109.80305 * 50.05032 * 26 25 24 28 28 C 1.50652 * 130.33341 * 180.41157 * 23 22 21 29 29 C 1.47418 * 125.64788 * 173.89607 * 9 7 2 30 30 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.88349 * 300.51567 * 10 9 7 32 32 H 1.09003 * 109.87748 * 61.52348 * 10 9 7 33 33 H 0.96701 * 113.99723 * 293.52185 * 13 11 10 34 34 H 1.08996 * 109.46888 * 58.64769 * 16 14 11 35 35 H 1.09000 * 109.46869 * 298.64571 * 16 14 11 36 36 H 0.97004 * 119.99632 * 0.02562 * 17 16 14 37 37 H 1.08996 * 109.75489 * 283.36495 * 25 24 20 38 38 H 1.09002 * 109.74956 * 44.04899 * 25 24 20 39 39 H 1.09003 * 109.41452 * 170.15699 * 26 25 24 40 40 H 1.09000 * 109.41483 * 289.95294 * 26 25 24 41 41 H 1.09000 * 109.37907 * 48.43884 * 27 26 25 42 42 H 1.08994 * 109.37577 * 168.10561 * 27 26 25 43 43 H 1.09003 * 109.74258 * 282.78714 * 28 23 22 44 44 H 1.09005 * 109.74101 * 43.49249 * 28 23 22 45 45 H 1.08996 * 110.37141 * 36.99656 * 29 9 7 46 46 H 1.09007 * 110.36741 * 274.66980 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0845 -1.2056 0.1106 9 7 1.3327 -2.3838 -0.1420 10 6 -0.1293 -2.5348 -0.1737 11 6 -0.4314 -4.0410 -0.3200 12 1 -1.2865 -4.3243 0.2936 13 8 -0.6554 -4.3811 -1.6898 14 6 0.8668 -4.7085 0.2060 15 1 0.8610 -4.7717 1.2942 16 6 1.0653 -6.0905 -0.4197 17 7 2.3142 -6.6755 0.0744 18 6 2.6973 -7.8983 -0.3434 19 8 2.0065 -8.5157 -1.1307 20 6 3.9551 -8.4871 0.1537 21 8 4.8284 -7.9323 1.0239 22 7 5.7722 -8.6665 1.2382 23 6 5.6767 -9.7711 0.5773 24 6 4.4744 -9.6942 -0.1662 25 6 3.9802 -10.7744 -1.0839 26 6 5.1514 -11.7249 -1.3728 27 6 5.8141 -12.1451 -0.0592 28 6 6.5943 -10.9652 0.5362 29 6 1.9488 -3.7153 -0.2867 30 1 -0.4850 0.8401 0.0004 31 1 -0.5611 -2.1586 0.7538 32 1 -0.5401 -1.9878 -1.0223 33 1 -1.4550 -3.9888 -2.0667 34 1 1.1131 -5.9947 -1.5044 35 1 0.2296 -6.7356 -0.1484 36 1 2.8651 -6.1831 0.7029 37 1 3.1701 -11.3234 -0.6040 38 1 3.6249 -10.3328 -2.0149 39 1 4.7809 -12.6094 -1.8910 40 1 5.8831 -11.2176 -2.0016 41 1 5.0475 -12.4652 0.6464 42 1 6.4980 -12.9726 -0.2478 43 1 7.4600 -10.7429 -0.0878 44 1 6.9215 -11.2131 1.5460 45 1 2.8422 -3.7894 0.3333 46 1 2.1936 -3.9085 -1.3312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958257752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:11 Heat of formation + Delta-G solvation = -8.020245 kcal Electronic energy + Delta-G solvation = -28942.242694 eV Core-core repulsion = 24835.441176 eV Total energy + Delta-G solvation = -4106.801518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.16348 -39.77177 -38.35185 -38.01248 -35.07011 -34.64310 -33.19790 -32.63219 -32.16382 -30.40979 -29.51224 -27.78391 -25.91022 -25.24091 -24.05486 -23.48777 -22.60589 -20.70785 -20.34326 -20.03234 -19.65810 -18.20815 -17.92947 -17.37823 -16.51812 -15.98382 -15.96774 -15.34156 -15.19470 -14.86428 -14.70648 -14.34134 -14.11741 -14.05546 -13.75915 -13.54922 -13.37226 -12.95447 -12.79888 -12.74782 -12.60185 -12.06465 -11.91413 -11.49704 -11.38776 -11.33717 -11.24638 -10.89255 -10.83944 -10.67597 -10.52482 -10.42271 -10.17546 -10.08324 -9.97648 -9.79799 -9.70802 -9.22682 -9.05016 -8.65438 -6.87855 -5.77753 -3.09619 0.66321 1.82866 2.47498 2.90713 3.16138 3.38355 3.44012 3.45409 3.59282 4.17265 4.38579 4.44331 4.45140 4.61122 4.65770 4.74042 4.88084 5.02471 5.06192 5.09711 5.19243 5.27843 5.35637 5.37966 5.43536 5.49660 5.55321 5.56956 5.61877 5.72617 5.85586 5.87324 5.91132 5.96397 6.05654 6.30100 6.31636 6.36632 6.55720 6.86433 7.28533 7.33157 7.49146 7.72746 7.84123 7.97178 8.18172 8.20722 9.16245 9.77091 10.42708 11.34806 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002412 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.489198 B =11604.928372 C =12701.295732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.084 3.916 12 H 0.058 0.942 13 O -0.564 6.564 14 C -0.111 4.111 15 H 0.091 0.909 16 C 0.139 3.861 17 N -0.708 5.708 18 C 0.603 3.397 19 O -0.513 6.513 20 C -0.076 4.076 21 O 0.102 5.898 22 N -0.333 5.333 23 C 0.014 3.986 24 C -0.123 4.123 25 C -0.049 4.049 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.040 4.040 29 C 0.144 3.856 30 H 0.252 0.748 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.037 0.963 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -23.661 0.238 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.024 3.976 12 H 0.076 0.924 13 O -0.370 6.370 14 C -0.131 4.131 15 H 0.109 0.891 16 C 0.016 3.984 17 N -0.359 5.359 18 C 0.386 3.614 19 O -0.390 6.390 20 C -0.141 4.141 21 O 0.032 5.968 22 N -0.036 5.036 23 C -0.146 4.146 24 C -0.128 4.128 25 C -0.086 4.086 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.078 4.078 29 C 0.017 3.983 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.531 -23.672 0.626 24.849 hybrid contribution -0.196 1.306 -0.097 1.324 sum 7.336 -22.366 0.528 23.545 Atomic orbital electron populations 1.69939 1.04962 1.25125 1.57031 1.24812 0.95739 0.97732 1.02126 0.86100 0.78701 0.83466 0.77533 1.21594 1.21775 1.20587 1.19080 0.91159 0.82480 1.42851 0.90322 1.44359 1.01301 1.01218 1.86013 1.21874 0.85438 0.88534 1.01475 1.23098 0.95099 0.97220 0.82201 0.92417 1.86392 1.49066 1.75321 1.26194 1.22707 0.97342 0.93109 0.99921 0.89120 1.21324 0.83930 0.92810 1.00315 1.46040 1.25628 1.17125 1.47066 1.16461 0.81899 0.81764 0.81274 1.90854 1.52543 1.61515 1.34067 1.23527 0.95980 0.95617 0.98937 1.85277 1.23928 1.38672 1.48883 1.73448 1.06659 1.03632 1.19839 1.23415 0.97720 0.96285 0.97210 1.21100 0.95081 0.95891 1.00735 1.20114 0.97753 0.92680 0.98047 1.21683 0.97466 0.99427 0.97380 1.21626 0.99836 0.96842 0.97395 1.20133 0.95817 0.88966 1.02896 1.21585 0.93617 0.85486 0.97583 0.93730 0.93312 0.92837 0.77697 0.89592 0.91242 0.75694 0.89434 0.88814 0.90564 0.91377 0.91235 0.90434 0.89270 0.89454 0.94432 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.36 55.49 0.57 -26.00 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.27 10.26 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 10 C 0.15 3.51 5.15 -3.07 -0.02 3.49 16 11 C 0.08 1.47 4.09 -24.90 -0.10 1.37 16 12 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 13 O -0.56 -9.45 12.10 -35.23 -0.43 -9.88 16 14 C -0.11 -1.82 3.03 -88.46 -0.27 -2.08 16 15 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.14 2.03 4.74 -4.04 -0.02 2.01 16 17 N -0.71 -9.36 5.40 -61.36 -0.33 -9.69 16 18 C 0.60 8.40 7.82 -12.48 -0.10 8.31 16 19 O -0.51 -8.26 15.93 5.29 0.08 -8.18 16 20 C -0.08 -0.98 7.28 -36.87 -0.27 -1.25 16 21 O 0.10 1.33 11.10 13.81 0.15 1.48 16 22 N -0.33 -4.32 12.03 33.15 0.40 -3.92 16 23 C 0.01 0.16 7.21 -82.51 -0.60 -0.44 16 24 C -0.12 -1.41 6.03 -104.70 -0.63 -2.04 16 25 C -0.05 -0.45 5.59 -27.87 -0.16 -0.60 16 26 C -0.12 -0.79 5.87 -26.43 -0.16 -0.94 16 27 C -0.12 -0.68 5.84 -26.48 -0.15 -0.83 16 28 C -0.04 -0.29 6.32 -27.66 -0.17 -0.47 16 29 C 0.14 2.88 6.40 -2.53 -0.02 2.86 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 1.23 7.55 -51.93 -0.39 0.84 16 32 H 0.05 1.38 7.29 -51.93 -0.38 1.00 16 33 H 0.38 4.96 9.12 45.56 0.42 5.37 16 34 H 0.09 1.43 7.42 -51.93 -0.39 1.05 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 4.85 8.18 -40.82 -0.33 4.52 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.95 7.77 -51.93 -0.40 0.54 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 41 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -32.85 373.26 -8.51 -41.36 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.09 Total: 5.19 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.90 Total: 2.66 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.06 Total: -55.22 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.19 Total: -16.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.85 -8.51 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.342 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds