Wall clock time and date at job start Tue Mar 31 2020 18:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47518 * 274.98749 * 3 2 1 5 5 H 1.48499 * 109.47257 * 34.98878 * 3 2 1 6 6 H 1.48505 * 109.47078 * 154.98928 * 3 2 1 7 7 C 1.38808 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00380 * 186.82462 * 7 2 1 9 9 N 1.36945 * 120.00106 * 6.82356 * 7 2 1 10 10 C 1.47020 * 125.64776 * 353.84856 * 9 7 2 11 11 C 1.54316 * 107.27354 * 181.09463 * 10 9 7 12 12 H 1.09000 * 110.71929 * 140.55611 * 11 10 9 13 13 O 1.42900 * 110.72332 * 263.83277 * 11 10 9 14 14 C 1.55160 * 102.94049 * 22.19804 * 11 10 9 15 15 H 1.09000 * 111.03721 * 82.58452 * 14 11 10 16 16 C 1.53006 * 111.00227 * 206.42426 * 14 11 10 17 17 N 1.46499 * 109.47005 * 178.64750 * 16 14 11 18 18 C 1.34775 * 120.00370 * 179.97438 * 17 16 14 19 19 O 1.21582 * 119.99584 * 0.02562 * 18 17 16 20 20 C 1.47507 * 120.00470 * 179.97438 * 18 17 16 21 21 O 1.35191 * 127.15239 * 359.97438 * 20 18 17 22 22 N 1.21482 * 111.55279 * 179.97438 * 21 20 18 23 23 C 1.29066 * 111.68200 * 359.90848 * 22 21 20 24 24 C 1.35244 * 127.15423 * 179.97438 * 20 18 17 25 25 C 1.50109 * 131.34037 * 0.30139 * 24 20 18 26 26 C 1.53575 * 108.01903 * 163.72970 * 25 24 20 27 27 C 1.53005 * 109.80305 * 50.05032 * 26 25 24 28 28 C 1.50652 * 130.33341 * 180.41157 * 23 22 21 29 29 C 1.47418 * 125.64788 * 173.89607 * 9 7 2 30 30 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.88349 * 300.51567 * 10 9 7 32 32 H 1.09003 * 109.87748 * 61.52348 * 10 9 7 33 33 H 0.96701 * 113.99723 * 293.52185 * 13 11 10 34 34 H 1.08996 * 109.46888 * 58.64769 * 16 14 11 35 35 H 1.09000 * 109.46869 * 298.64571 * 16 14 11 36 36 H 0.97004 * 119.99632 * 0.02562 * 17 16 14 37 37 H 1.08996 * 109.75489 * 283.36495 * 25 24 20 38 38 H 1.09002 * 109.74956 * 44.04899 * 25 24 20 39 39 H 1.09003 * 109.41452 * 170.15699 * 26 25 24 40 40 H 1.09000 * 109.41483 * 289.95294 * 26 25 24 41 41 H 1.09000 * 109.37907 * 48.43884 * 27 26 25 42 42 H 1.08994 * 109.37577 * 168.10561 * 27 26 25 43 43 H 1.09003 * 109.74258 * 282.78714 * 28 23 22 44 44 H 1.09005 * 109.74101 * 43.49249 * 28 23 22 45 45 H 1.08996 * 110.37141 * 36.99656 * 29 9 7 46 46 H 1.09007 * 110.36741 * 274.66980 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0845 -1.2056 0.1106 9 7 1.3327 -2.3838 -0.1420 10 6 -0.1293 -2.5348 -0.1737 11 6 -0.4314 -4.0410 -0.3200 12 1 -1.2865 -4.3243 0.2936 13 8 -0.6554 -4.3811 -1.6898 14 6 0.8668 -4.7085 0.2060 15 1 0.8610 -4.7717 1.2942 16 6 1.0653 -6.0905 -0.4197 17 7 2.3142 -6.6755 0.0744 18 6 2.6973 -7.8983 -0.3434 19 8 2.0065 -8.5157 -1.1307 20 6 3.9551 -8.4871 0.1537 21 8 4.8284 -7.9323 1.0239 22 7 5.7722 -8.6665 1.2382 23 6 5.6767 -9.7711 0.5773 24 6 4.4744 -9.6942 -0.1662 25 6 3.9802 -10.7744 -1.0839 26 6 5.1514 -11.7249 -1.3728 27 6 5.8141 -12.1451 -0.0592 28 6 6.5943 -10.9652 0.5362 29 6 1.9488 -3.7153 -0.2867 30 1 -0.4850 0.8401 0.0004 31 1 -0.5611 -2.1586 0.7538 32 1 -0.5401 -1.9878 -1.0223 33 1 -1.4550 -3.9888 -2.0667 34 1 1.1131 -5.9947 -1.5044 35 1 0.2296 -6.7356 -0.1484 36 1 2.8651 -6.1831 0.7029 37 1 3.1701 -11.3234 -0.6040 38 1 3.6249 -10.3328 -2.0149 39 1 4.7809 -12.6094 -1.8910 40 1 5.8831 -11.2176 -2.0016 41 1 5.0475 -12.4652 0.6464 42 1 6.4980 -12.9726 -0.2478 43 1 7.4600 -10.7429 -0.0878 44 1 6.9215 -11.2131 1.5460 45 1 2.8422 -3.7894 0.3333 46 1 2.1936 -3.9085 -1.3312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958257752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:10 Heat of formation + Delta-G solvation = -31.987874 kcal Electronic energy + Delta-G solvation = -28943.282008 eV Core-core repulsion = 24835.441176 eV Total energy + Delta-G solvation = -4107.840832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.06827 -40.95548 -39.81116 -38.71296 -36.40738 -36.19703 -34.18149 -33.82447 -33.38967 -31.63651 -30.70786 -29.43240 -27.42150 -26.25764 -25.40710 -24.26322 -23.76388 -22.20143 -21.54420 -21.10375 -20.70949 -19.28763 -19.05768 -18.85666 -18.08845 -17.13438 -16.93161 -16.77995 -16.38262 -16.01952 -15.76529 -15.57003 -15.36183 -15.08770 -14.89670 -14.77819 -14.39261 -14.37917 -14.15399 -13.65851 -13.56732 -13.39744 -13.14874 -13.12526 -12.84201 -12.69716 -12.34552 -12.08807 -11.95398 -11.89926 -11.87757 -11.78265 -11.67693 -11.51425 -11.28671 -10.99690 -10.79595 -10.70268 -10.65043 -10.17906 -8.90350 -7.88426 -5.21969 -0.31988 0.97158 1.45015 1.46852 1.46889 1.55317 1.83861 2.12429 2.47765 2.84450 3.27786 3.31893 3.38526 3.55139 3.67898 3.81468 3.89625 3.91938 3.95308 3.99527 4.01654 4.29687 4.37734 4.41696 4.42963 4.53083 4.58663 4.62811 4.83037 4.84851 4.89092 4.90620 4.97849 4.99101 5.13169 5.14070 5.18739 5.29489 5.37007 5.40333 5.40414 5.54480 5.70597 6.17398 6.20854 6.81625 6.95610 6.98313 7.08804 7.75318 8.39713 9.22279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002412 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.489198 B =11604.928372 C =12701.295732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.158 3.842 11 C 0.098 3.902 12 H 0.091 0.909 13 O -0.569 6.569 14 C -0.095 4.095 15 H 0.109 0.891 16 C 0.154 3.846 17 N -0.703 5.703 18 C 0.608 3.392 19 O -0.537 6.537 20 C -0.094 4.094 21 O 0.088 5.912 22 N -0.355 5.355 23 C 0.020 3.980 24 C -0.122 4.122 25 C -0.051 4.051 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.043 4.043 29 C 0.141 3.859 30 H 0.247 0.753 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.391 0.609 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.048 0.952 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 -26.061 0.500 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.032 3.968 11 C 0.038 3.962 12 H 0.108 0.892 13 O -0.377 6.377 14 C -0.114 4.114 15 H 0.127 0.873 16 C 0.031 3.969 17 N -0.353 5.353 18 C 0.392 3.608 19 O -0.415 6.415 20 C -0.158 4.158 21 O 0.022 5.978 22 N -0.061 5.061 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.089 4.089 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.081 4.081 29 C 0.015 3.985 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.241 0.759 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.251 0.749 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 8.708 -26.079 0.887 27.509 hybrid contribution -0.520 2.011 -0.218 2.088 sum 8.188 -24.068 0.669 25.431 Atomic orbital electron populations 1.70143 1.06163 1.25315 1.58105 1.25616 0.96652 1.00866 1.02583 0.85107 0.77959 0.79415 0.77164 1.21715 1.21979 1.19274 1.19444 0.91621 0.83900 1.42142 0.90135 1.44681 1.02402 1.02263 1.85758 1.21718 0.84416 0.92174 0.98477 1.22918 0.96793 0.93201 0.83282 0.89167 1.86372 1.50384 1.75098 1.25875 1.22600 0.95065 0.92857 1.00896 0.87327 1.21062 0.84946 0.91930 0.98973 1.45932 1.25336 1.17043 1.47029 1.16511 0.82013 0.81564 0.80761 1.90837 1.53427 1.62138 1.35136 1.23411 0.96016 0.96424 0.99936 1.85249 1.24174 1.39067 1.49342 1.73434 1.07007 1.04614 1.21019 1.24064 0.97833 0.96507 0.95737 1.21532 0.94983 0.95752 1.00406 1.20238 0.99147 0.92598 0.96883 1.21700 0.96353 0.99413 0.98105 1.21646 1.00139 0.96801 0.96630 1.20404 0.95708 0.87902 1.04086 1.21701 0.95154 0.84417 0.97190 0.94334 0.96241 0.96394 0.75900 0.91441 0.89865 0.74869 0.88968 0.90086 0.88583 0.91428 0.91311 0.87730 0.87969 0.88341 0.93364 0.96795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.18 10.36 21.65 0.22 -55.95 16 2 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 3 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.53 10.26 84.03 0.86 -12.67 16 8 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 9 N -0.62 -31.61 3.39 -692.00 -2.35 -33.96 16 10 C 0.16 7.42 5.15 86.73 0.45 7.87 16 11 C 0.10 3.34 4.09 31.78 0.13 3.47 16 12 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 13 O -0.57 -18.47 12.10 -148.98 -1.80 -20.28 16 14 C -0.09 -2.96 3.03 -9.40 -0.03 -2.99 16 15 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 16 C 0.15 4.28 4.74 86.38 0.41 4.69 16 17 N -0.70 -17.92 5.40 -466.31 -2.52 -20.44 16 18 C 0.61 16.63 7.82 86.69 0.68 17.30 16 19 O -0.54 -17.03 15.93 -3.98 -0.06 -17.09 16 20 C -0.09 -2.37 7.28 24.03 0.17 -2.20 16 21 O 0.09 2.29 11.10 59.44 0.66 2.95 16 22 N -0.36 -8.99 12.03 -50.86 -0.61 -9.60 16 23 C 0.02 0.40 7.21 43.77 0.32 0.72 16 24 C -0.12 -2.67 6.03 -19.92 -0.12 -2.79 16 25 C -0.05 -0.87 5.59 29.86 0.17 -0.70 16 26 C -0.12 -1.21 5.87 30.79 0.18 -1.03 16 27 C -0.11 -0.93 5.84 30.76 0.18 -0.75 16 28 C -0.04 -0.51 6.32 29.99 0.19 -0.32 16 29 C 0.14 5.61 6.40 86.86 0.56 6.16 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.02 1.02 7.55 -2.38 -0.02 1.00 16 32 H 0.02 0.96 7.29 -2.39 -0.02 0.94 16 33 H 0.39 9.95 9.12 -74.06 -0.68 9.28 16 34 H 0.07 2.18 7.42 -2.39 -0.02 2.16 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.41 9.49 8.18 -92.71 -0.76 8.73 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.59 7.77 -2.39 -0.02 1.57 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.72 8.11 -2.39 -0.02 0.70 16 41 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 42 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.01 0.60 8.00 -2.38 -0.02 0.58 16 Total: -1.00 -72.66 373.26 -0.24 -72.90 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.41 Total: 20.07 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 4.61 Total: 13.60 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.26 Total: -119.96 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.21 Total: -34.42 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.66 -0.24 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.910 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds