Wall clock time and date at job start Tue Mar 31 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46977 * 265.28922 * 3 2 1 5 5 H 1.48493 * 109.47209 * 145.29046 * 3 2 1 6 6 H 1.48505 * 109.47032 * 25.28832 * 3 2 1 7 7 C 1.38814 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00228 * 332.81146 * 7 2 1 9 9 N 1.36937 * 119.99400 * 152.80431 * 7 2 1 10 10 C 1.47016 * 125.65420 * 349.55922 * 9 7 2 11 11 C 1.54331 * 107.26976 * 178.84882 * 10 9 7 12 12 H 1.09000 * 110.85556 * 219.67428 * 11 10 9 13 13 O 1.42908 * 110.66880 * 96.52288 * 11 10 9 14 14 C 1.55158 * 103.01765 * 338.14424 * 11 10 9 15 15 H 1.09005 * 111.00412 * 277.22842 * 14 11 10 16 16 C 1.53007 * 111.03732 * 153.39767 * 14 11 10 17 17 N 1.46502 * 109.47102 * 181.32835 * 16 14 11 18 18 C 1.34780 * 119.99850 * 179.97438 * 17 16 14 19 19 O 1.21578 * 119.99703 * 0.02562 * 18 17 16 20 20 C 1.47511 * 119.99855 * 179.97438 * 18 17 16 21 21 O 1.35189 * 127.15141 * 359.68924 * 20 18 17 22 22 N 1.21478 * 111.54930 * 179.78831 * 21 20 18 23 23 C 1.29071 * 111.68712 * 0.35443 * 22 21 20 24 24 C 1.35244 * 127.15190 * 180.02562 * 20 18 17 25 25 C 1.50102 * 131.33938 * 0.34870 * 24 20 18 26 26 C 1.53575 * 108.01918 * 163.65972 * 25 24 20 27 27 C 1.53005 * 109.80319 * 50.04876 * 26 25 24 28 28 C 1.50651 * 130.33802 * 180.02562 * 23 22 21 29 29 C 1.47428 * 125.64294 * 169.87130 * 9 7 2 30 30 H 0.97006 * 119.99448 * 185.05077 * 1 2 3 31 31 H 1.09001 * 109.88088 * 298.39303 * 10 9 7 32 32 H 1.09002 * 109.88269 * 59.55774 * 10 9 7 33 33 H 0.96695 * 113.99881 * 66.40990 * 13 11 10 34 34 H 1.09000 * 109.46526 * 301.32806 * 16 14 11 35 35 H 1.08994 * 109.47159 * 61.32607 * 16 14 11 36 36 H 0.97002 * 119.99674 * 359.97438 * 17 16 14 37 37 H 1.08999 * 109.75262 * 283.29443 * 25 24 20 38 38 H 1.09000 * 109.75117 * 44.03359 * 25 24 20 39 39 H 1.09003 * 109.41811 * 289.95055 * 26 25 24 40 40 H 1.09000 * 109.41991 * 170.14921 * 26 25 24 41 41 H 1.08997 * 109.37952 * 168.10413 * 27 26 25 42 42 H 1.09004 * 109.37643 * 48.44650 * 27 26 25 43 43 H 1.09000 * 109.73952 * 282.84980 * 28 23 22 44 44 H 1.08995 * 109.73819 * 43.55498 * 28 23 22 45 45 H 1.08996 * 110.36643 * 322.92496 * 29 9 7 46 46 H 1.08994 * 110.37295 * 85.14039 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5972 1.9889 -1.3953 5 1 3.4944 1.4710 0.7972 6 1 1.4013 2.6794 0.5981 7 6 2.0103 -1.2021 0.0005 8 1 1.5599 -2.0856 0.4283 9 7 3.2661 -1.2678 -0.5415 10 6 3.9100 -0.2162 -1.3421 11 6 5.3220 -0.7195 -1.7090 12 1 6.0503 0.0891 -1.6475 13 8 5.3263 -1.3032 -3.0135 14 6 5.6023 -1.7945 -0.6258 15 1 5.9646 -1.3365 0.2946 16 6 6.5897 -2.8453 -1.1375 17 7 6.8050 -3.8585 -0.1014 18 6 7.6419 -4.8897 -0.3309 19 8 8.2186 -4.9788 -1.3975 20 6 7.8591 -5.9095 0.7126 21 8 7.3028 -5.9490 1.9441 22 7 7.6770 -6.9193 2.5719 23 6 8.5062 -7.6370 1.8912 24 6 8.6611 -6.9960 0.6384 25 6 9.5523 -7.4974 -0.4604 26 6 10.5209 -8.5241 0.1446 27 6 9.7397 -9.5543 0.9628 28 6 9.2196 -8.9127 2.2563 29 6 4.1940 -2.4074 -0.4241 30 1 -0.4850 -0.8369 0.0740 31 1 3.3321 -0.0341 -2.2482 32 1 3.9856 0.7008 -0.7576 33 1 5.1557 -0.6730 -3.7268 34 1 6.1844 -3.3199 -2.0311 35 1 7.5381 -2.3656 -1.3792 36 1 6.3452 -3.7871 0.7497 37 1 8.9502 -7.9712 -1.2358 38 1 10.1149 -6.6666 -0.8863 39 1 11.2335 -8.0125 0.7917 40 1 11.0592 -9.0305 -0.6565 41 1 10.3937 -10.3901 1.2112 42 1 8.8970 -9.9189 0.3753 43 1 10.0562 -8.6901 2.9186 44 1 8.5272 -9.5926 2.7526 45 1 4.1155 -2.8603 0.5642 46 1 3.9861 -3.1471 -1.1972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958257753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:14 Heat of formation + Delta-G solvation = -2.013252 kcal Electronic energy + Delta-G solvation = -29044.280624 eV Core-core repulsion = 24937.739589 eV Total energy + Delta-G solvation = -4106.541035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.20622 -39.88512 -38.66944 -38.07415 -35.27137 -34.87877 -33.24421 -32.67361 -32.33548 -30.67681 -29.83328 -28.13438 -26.21235 -25.27581 -23.80528 -23.52121 -22.51348 -21.05522 -20.50202 -20.08005 -19.82848 -18.30846 -17.97217 -17.81140 -16.91048 -16.13396 -16.06911 -15.56940 -15.36142 -15.26238 -14.79415 -14.41686 -14.36122 -14.16773 -13.88461 -13.59017 -13.49434 -13.08050 -12.99822 -12.94007 -12.82317 -12.41322 -12.10080 -11.87794 -11.42069 -11.37661 -11.22327 -11.16510 -10.92850 -10.88838 -10.62817 -10.59967 -10.29466 -10.21074 -9.87486 -9.75794 -9.50231 -9.20137 -9.15324 -8.45728 -7.15508 -6.36866 -3.21489 0.61294 1.79038 2.41684 2.83793 3.08135 3.34233 3.44869 3.55713 3.63306 4.12658 4.33877 4.35986 4.41370 4.54866 4.56953 4.66826 4.73446 4.84436 4.99390 5.03884 5.06656 5.07653 5.13001 5.15319 5.35422 5.40140 5.42141 5.52215 5.54773 5.58672 5.65585 5.68921 5.74121 5.83813 5.87830 6.01863 6.07567 6.20313 6.32101 6.38111 6.56900 6.74098 7.19807 7.65256 7.77782 7.86977 7.91170 8.30365 9.00060 9.55490 10.21591 11.11399 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.002476 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.107017 B =11307.404956 C =12144.636116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.090 3.910 11 C 0.103 3.897 12 H 0.067 0.933 13 O -0.557 6.557 14 C -0.115 4.115 15 H 0.095 0.905 16 C 0.139 3.861 17 N -0.709 5.709 18 C 0.605 3.395 19 O -0.513 6.513 20 C -0.078 4.078 21 O 0.102 5.898 22 N -0.332 5.332 23 C 0.014 3.986 24 C -0.122 4.122 25 C -0.049 4.049 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.040 4.040 29 C 0.143 3.857 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.378 0.622 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.013 -14.351 0.173 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.222 4.222 3 Si 0.904 3.096 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.036 4.036 11 C 0.043 3.957 12 H 0.084 0.916 13 O -0.363 6.363 14 C -0.134 4.134 15 H 0.113 0.887 16 C 0.017 3.983 17 N -0.360 5.360 18 C 0.388 3.612 19 O -0.389 6.389 20 C -0.142 4.142 21 O 0.033 5.967 22 N -0.035 5.035 23 C -0.146 4.146 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.078 4.078 29 C 0.017 3.983 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 22.704 -13.382 0.937 26.371 hybrid contribution 0.036 -1.049 -0.250 1.079 sum 22.741 -14.431 0.688 26.942 Atomic orbital electron populations 1.70917 1.05853 1.30085 1.48827 1.25802 0.96344 1.00835 0.99188 0.83688 0.73811 0.76059 0.76032 1.22301 1.22141 1.22663 1.20009 0.89342 0.97236 1.39259 0.90539 1.44656 1.14940 1.14096 1.59558 1.22389 0.92282 0.92999 0.95911 1.22683 0.96076 0.93996 0.82971 0.91561 1.86449 1.94674 1.39858 1.15336 1.22779 0.96962 0.95825 0.97882 0.88710 1.21280 0.98785 0.87904 0.90362 1.46003 1.45069 1.24948 1.19991 1.16446 0.80226 0.80007 0.84554 1.90854 1.49106 1.75458 1.23471 1.23490 1.01472 1.00538 0.88729 1.85279 1.54183 1.35863 1.21422 1.73453 1.13256 0.97376 1.19389 1.23427 0.98815 1.00381 0.91998 1.21104 0.99743 0.94118 0.97710 1.20120 0.95488 0.99188 0.93824 1.21680 0.97766 0.96546 0.99916 1.21631 1.00571 0.98203 0.95361 1.20133 0.98954 0.90001 0.98723 1.21673 0.86379 0.91432 0.98811 0.92613 0.93552 0.94930 0.77461 0.89477 0.91061 0.75621 0.89338 0.88879 0.91430 0.90544 0.90401 0.91172 0.89290 0.89389 0.93758 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.56 13.70 55.49 0.76 -27.80 16 2 C -0.02 -0.61 5.43 -17.43 -0.09 -0.70 16 3 Si 1.07 26.30 24.69 -169.99 -4.20 22.10 16 4 H -0.29 -6.76 6.80 56.52 0.38 -6.38 16 5 H -0.29 -6.79 6.75 56.52 0.38 -6.41 16 6 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.33 -9.42 10.43 -15.06 -0.16 -9.58 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 N -0.61 -14.57 3.28 -170.07 -0.56 -15.13 16 10 C 0.09 1.87 4.76 -3.06 -0.01 1.85 16 11 C 0.10 1.62 4.09 -24.89 -0.10 1.52 16 12 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -8.25 12.09 -35.23 -0.43 -8.68 16 14 C -0.11 -1.75 3.03 -88.47 -0.27 -2.02 16 15 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.14 1.90 4.74 -4.04 -0.02 1.88 16 17 N -0.71 -8.94 5.40 -61.36 -0.33 -9.27 16 18 C 0.60 8.11 7.82 -12.48 -0.10 8.02 16 19 O -0.51 -7.94 15.93 5.30 0.08 -7.86 16 20 C -0.08 -0.97 7.28 -36.87 -0.27 -1.24 16 21 O 0.10 1.31 11.10 13.82 0.15 1.47 16 22 N -0.33 -4.27 12.03 33.15 0.40 -3.87 16 23 C 0.01 0.16 7.21 -82.50 -0.60 -0.44 16 24 C -0.12 -1.36 6.02 -104.71 -0.63 -1.99 16 25 C -0.05 -0.43 5.59 -27.87 -0.16 -0.59 16 26 C -0.12 -0.74 5.87 -26.43 -0.16 -0.90 16 27 C -0.12 -0.67 5.84 -26.48 -0.15 -0.82 16 28 C -0.04 -0.28 6.32 -27.66 -0.17 -0.46 16 29 C 0.14 2.78 6.40 -2.53 -0.02 2.77 16 30 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 31 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.03 0.71 3.59 -51.93 -0.19 0.53 16 33 H 0.38 4.08 9.12 45.56 0.42 4.50 16 34 H 0.09 1.35 7.43 -51.93 -0.39 0.96 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.41 4.66 8.18 -40.82 -0.33 4.33 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.88 7.77 -51.93 -0.40 0.48 16 39 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.03 0.67 8.01 -51.93 -0.42 0.25 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -34.62 368.00 -7.45 -42.07 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.98 Total: 4.14 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.90 Total: -2.71 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.27 Total: -56.07 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.19 Total: -15.07 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.20 Total: 22.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.62 -7.45 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.056 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds