Wall clock time and date at job start Tue Mar 31 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46977 * 265.28922 * 3 2 1 5 5 H 1.48493 * 109.47209 * 145.29046 * 3 2 1 6 6 H 1.48505 * 109.47032 * 25.28832 * 3 2 1 7 7 C 1.38814 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00228 * 332.81146 * 7 2 1 9 9 N 1.36937 * 119.99400 * 152.80431 * 7 2 1 10 10 C 1.47016 * 125.65420 * 349.55922 * 9 7 2 11 11 C 1.54331 * 107.26976 * 178.84882 * 10 9 7 12 12 H 1.09000 * 110.85556 * 219.67428 * 11 10 9 13 13 O 1.42908 * 110.66880 * 96.52288 * 11 10 9 14 14 C 1.55158 * 103.01765 * 338.14424 * 11 10 9 15 15 H 1.09005 * 111.00412 * 277.22842 * 14 11 10 16 16 C 1.53007 * 111.03732 * 153.39767 * 14 11 10 17 17 N 1.46502 * 109.47102 * 181.32835 * 16 14 11 18 18 C 1.34780 * 119.99850 * 179.97438 * 17 16 14 19 19 O 1.21578 * 119.99703 * 0.02562 * 18 17 16 20 20 C 1.47511 * 119.99855 * 179.97438 * 18 17 16 21 21 O 1.35189 * 127.15141 * 359.68924 * 20 18 17 22 22 N 1.21478 * 111.54930 * 179.78831 * 21 20 18 23 23 C 1.29071 * 111.68712 * 0.35443 * 22 21 20 24 24 C 1.35244 * 127.15190 * 180.02562 * 20 18 17 25 25 C 1.50102 * 131.33938 * 0.34870 * 24 20 18 26 26 C 1.53575 * 108.01918 * 163.65972 * 25 24 20 27 27 C 1.53005 * 109.80319 * 50.04876 * 26 25 24 28 28 C 1.50651 * 130.33802 * 180.02562 * 23 22 21 29 29 C 1.47428 * 125.64294 * 169.87130 * 9 7 2 30 30 H 0.97006 * 119.99448 * 185.05077 * 1 2 3 31 31 H 1.09001 * 109.88088 * 298.39303 * 10 9 7 32 32 H 1.09002 * 109.88269 * 59.55774 * 10 9 7 33 33 H 0.96695 * 113.99881 * 66.40990 * 13 11 10 34 34 H 1.09000 * 109.46526 * 301.32806 * 16 14 11 35 35 H 1.08994 * 109.47159 * 61.32607 * 16 14 11 36 36 H 0.97002 * 119.99674 * 359.97438 * 17 16 14 37 37 H 1.08999 * 109.75262 * 283.29443 * 25 24 20 38 38 H 1.09000 * 109.75117 * 44.03359 * 25 24 20 39 39 H 1.09003 * 109.41811 * 289.95055 * 26 25 24 40 40 H 1.09000 * 109.41991 * 170.14921 * 26 25 24 41 41 H 1.08997 * 109.37952 * 168.10413 * 27 26 25 42 42 H 1.09004 * 109.37643 * 48.44650 * 27 26 25 43 43 H 1.09000 * 109.73952 * 282.84980 * 28 23 22 44 44 H 1.08995 * 109.73819 * 43.55498 * 28 23 22 45 45 H 1.08996 * 110.36643 * 322.92496 * 29 9 7 46 46 H 1.08994 * 110.37295 * 85.14039 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5972 1.9889 -1.3953 5 1 3.4944 1.4710 0.7972 6 1 1.4013 2.6794 0.5981 7 6 2.0103 -1.2021 0.0005 8 1 1.5599 -2.0856 0.4283 9 7 3.2661 -1.2678 -0.5415 10 6 3.9100 -0.2162 -1.3421 11 6 5.3220 -0.7195 -1.7090 12 1 6.0503 0.0891 -1.6475 13 8 5.3263 -1.3032 -3.0135 14 6 5.6023 -1.7945 -0.6258 15 1 5.9646 -1.3365 0.2946 16 6 6.5897 -2.8453 -1.1375 17 7 6.8050 -3.8585 -0.1014 18 6 7.6419 -4.8897 -0.3309 19 8 8.2186 -4.9788 -1.3975 20 6 7.8591 -5.9095 0.7126 21 8 7.3028 -5.9490 1.9441 22 7 7.6770 -6.9193 2.5719 23 6 8.5062 -7.6370 1.8912 24 6 8.6611 -6.9960 0.6384 25 6 9.5523 -7.4974 -0.4604 26 6 10.5209 -8.5241 0.1446 27 6 9.7397 -9.5543 0.9628 28 6 9.2196 -8.9127 2.2563 29 6 4.1940 -2.4074 -0.4241 30 1 -0.4850 -0.8369 0.0740 31 1 3.3321 -0.0341 -2.2482 32 1 3.9856 0.7008 -0.7576 33 1 5.1557 -0.6730 -3.7268 34 1 6.1844 -3.3199 -2.0311 35 1 7.5381 -2.3656 -1.3792 36 1 6.3452 -3.7871 0.7497 37 1 8.9502 -7.9712 -1.2358 38 1 10.1149 -6.6666 -0.8863 39 1 11.2335 -8.0125 0.7917 40 1 11.0592 -9.0305 -0.6565 41 1 10.3937 -10.3901 1.2112 42 1 8.8970 -9.9189 0.3753 43 1 10.0562 -8.6901 2.9186 44 1 8.5272 -9.5926 2.7526 45 1 4.1155 -2.8603 0.5642 46 1 3.9861 -3.1471 -1.1972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958257753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:13 Heat of formation + Delta-G solvation = -29.436324 kcal Electronic energy + Delta-G solvation = -29045.469778 eV Core-core repulsion = 24937.739589 eV Total energy + Delta-G solvation = -4107.730189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.09640 -41.02188 -40.01701 -38.73824 -36.55565 -36.27757 -34.33521 -33.99400 -33.41725 -32.01768 -30.79336 -29.66577 -27.62520 -26.15462 -25.16638 -24.28164 -23.67745 -22.63737 -21.53967 -21.19239 -20.77385 -19.71475 -19.22586 -18.88333 -18.35570 -17.32925 -17.13021 -16.88204 -16.40714 -16.12421 -15.89239 -15.62617 -15.55185 -15.17307 -15.02431 -14.90861 -14.67234 -14.44275 -14.25063 -14.00956 -13.68120 -13.41956 -13.36007 -13.06281 -12.87356 -12.69809 -12.42511 -12.19330 -12.00346 -11.90173 -11.87340 -11.63679 -11.57966 -11.41962 -11.16691 -11.02190 -10.92702 -10.67609 -10.52339 -10.20882 -9.20680 -8.67125 -5.44374 -0.34517 0.94712 1.37573 1.44646 1.51909 1.71174 1.80993 2.09351 2.51971 2.82207 2.98203 3.16510 3.31638 3.36812 3.64407 3.67964 3.77126 3.79247 3.88185 3.93167 3.95729 4.27284 4.28985 4.33355 4.35916 4.39860 4.49678 4.51266 4.62253 4.71378 4.81691 4.84201 4.88129 4.92638 4.96163 5.02998 5.12036 5.12511 5.18038 5.27579 5.29086 5.38561 5.55105 6.07358 6.16765 6.78020 6.80403 6.91294 6.95881 7.45900 8.10456 8.81431 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.002476 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.107017 B =11307.404956 C =12144.636116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.080 4.080 3 Si 1.114 2.886 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.308 1.308 7 C -0.324 4.324 8 H 0.039 0.961 9 N -0.627 5.627 10 C 0.077 3.923 11 C 0.115 3.885 12 H 0.112 0.888 13 O -0.567 6.567 14 C -0.099 4.099 15 H 0.116 0.884 16 C 0.152 3.848 17 N -0.705 5.705 18 C 0.609 3.391 19 O -0.535 6.535 20 C -0.096 4.096 21 O 0.087 5.913 22 N -0.356 5.356 23 C 0.019 3.981 24 C -0.121 4.121 25 C -0.051 4.051 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.043 4.043 29 C 0.139 3.861 30 H 0.247 0.753 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.396 0.604 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.900 -14.463 -0.147 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.274 4.274 3 Si 0.940 3.060 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.237 1.237 7 C -0.452 4.452 8 H 0.057 0.943 9 N -0.355 5.355 10 C -0.048 4.048 11 C 0.055 3.945 12 H 0.130 0.870 13 O -0.375 6.375 14 C -0.119 4.119 15 H 0.134 0.866 16 C 0.029 3.971 17 N -0.356 5.356 18 C 0.392 3.608 19 O -0.413 6.413 20 C -0.160 4.160 21 O 0.021 5.979 22 N -0.062 5.062 23 C -0.142 4.142 24 C -0.126 4.126 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.081 4.081 29 C 0.014 3.986 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.061 0.939 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 26.621 -13.505 0.588 29.857 hybrid contribution -1.210 -1.191 -0.167 1.706 sum 25.411 -14.696 0.421 29.358 Atomic orbital electron populations 1.71048 1.07199 1.29120 1.52239 1.27203 0.96286 1.04694 0.99209 0.83173 0.73375 0.71560 0.77852 1.19336 1.19265 1.23697 1.19886 0.91448 0.95897 1.38018 0.94275 1.44745 1.14467 1.16343 1.59918 1.22667 0.95001 0.92409 0.94692 1.22669 0.93589 0.94966 0.83252 0.87022 1.86433 1.94444 1.41041 1.15595 1.22694 0.94200 0.95959 0.99041 0.86617 1.21095 0.98886 0.87457 0.89640 1.45947 1.44849 1.24706 1.20068 1.16483 0.79844 0.80041 0.84390 1.90836 1.50074 1.76046 1.24372 1.23448 1.02523 1.01163 0.88817 1.85249 1.54793 1.36310 1.21579 1.73440 1.14552 0.98015 1.20176 1.24081 0.97719 1.00992 0.91399 1.21539 0.99151 0.93459 0.98457 1.20245 0.95618 0.99737 0.93274 1.21694 0.97162 0.95998 1.00586 1.21654 1.00805 0.98615 0.94297 1.20400 0.99291 0.88380 1.00011 1.21749 0.88467 0.90196 0.98228 0.94400 0.94990 0.94613 0.75325 0.91324 0.89221 0.74960 0.89360 0.89661 0.91070 0.88590 0.87678 0.91662 0.87674 0.88599 0.93854 0.96472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.66 13.70 21.65 0.30 -61.37 16 2 C -0.08 -4.78 5.43 84.86 0.46 -4.32 16 3 Si 1.11 52.44 24.69 68.60 1.69 54.13 16 4 H -0.27 -11.30 6.80 99.48 0.68 -10.62 16 5 H -0.27 -11.27 6.75 99.48 0.67 -10.60 16 6 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.32 -18.99 10.43 84.03 0.88 -18.11 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 9 N -0.63 -30.10 3.28 -691.99 -2.27 -32.37 16 10 C 0.08 3.04 4.76 86.73 0.41 3.45 16 11 C 0.12 3.20 4.09 31.79 0.13 3.33 16 12 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 13 O -0.57 -15.07 12.09 -148.98 -1.80 -16.88 16 14 C -0.10 -2.77 3.03 -9.40 -0.03 -2.80 16 15 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 16 C 0.15 3.81 4.74 86.38 0.41 4.22 16 17 N -0.71 -16.99 5.40 -466.30 -2.52 -19.51 16 18 C 0.61 15.99 7.82 86.69 0.68 16.67 16 19 O -0.54 -16.20 15.93 -3.96 -0.06 -16.26 16 20 C -0.10 -2.37 7.28 24.03 0.17 -2.19 16 21 O 0.09 2.26 11.10 59.46 0.66 2.92 16 22 N -0.36 -9.05 12.03 -50.83 -0.61 -9.67 16 23 C 0.02 0.39 7.21 43.77 0.32 0.71 16 24 C -0.12 -2.61 6.02 -19.92 -0.12 -2.73 16 25 C -0.05 -0.84 5.59 29.85 0.17 -0.68 16 26 C -0.12 -1.12 5.87 30.79 0.18 -0.94 16 27 C -0.12 -0.95 5.84 30.75 0.18 -0.77 16 28 C -0.04 -0.51 6.32 29.99 0.19 -0.32 16 29 C 0.14 5.35 6.40 86.85 0.56 5.90 16 30 H 0.25 16.16 8.73 -92.70 -0.81 15.35 16 31 H 0.03 1.35 7.90 -2.39 -0.02 1.33 16 32 H 0.04 1.43 3.59 -2.39 -0.01 1.42 16 33 H 0.40 7.27 9.12 -74.06 -0.68 6.60 16 34 H 0.07 2.02 7.43 -2.39 -0.02 2.01 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 9.12 8.18 -92.71 -0.76 8.36 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 39 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.02 0.72 8.01 -2.39 -0.02 0.70 16 Total: -1.00 -78.57 368.00 -0.54 -79.12 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.51 Total: 18.47 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 4.58 Total: 1.42 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.11 Total: -122.92 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.20 Total: -30.22 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 1.69 Total: 54.13 kcal Total: -78.57 -0.54 -79.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.680 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds