Wall clock time and date at job start Tue Mar 31 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86790 * 119.99982 * 2 1 4 4 H 1.48504 * 109.47510 * 269.99824 * 3 2 1 5 5 H 1.48505 * 109.47372 * 30.00129 * 3 2 1 6 6 H 1.48503 * 109.47528 * 149.99952 * 3 2 1 7 7 C 1.38813 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99569 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.47014 * 125.64792 * 179.97438 * 9 7 2 11 11 C 1.54327 * 107.27229 * 178.90754 * 10 9 7 12 12 H 1.08992 * 110.72265 * 96.34662 * 11 10 9 13 13 C 1.52998 * 110.72320 * 219.44903 * 11 10 9 14 14 N 1.46501 * 109.46962 * 293.54277 * 13 11 10 15 15 C 1.34771 * 120.00302 * 179.97438 * 14 13 11 16 16 O 1.21582 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.47514 * 120.00195 * 179.97438 * 15 14 13 18 18 O 1.35187 * 127.15442 * 0.04731 * 17 15 14 19 19 N 1.21475 * 111.55347 * 179.91399 * 18 17 15 20 20 C 1.29070 * 111.68698 * 359.89396 * 19 18 17 21 21 C 1.35255 * 127.15111 * 180.02562 * 17 15 14 22 22 C 1.50103 * 131.34280 * 0.47054 * 21 17 15 23 23 C 1.53539 * 108.03416 * 163.74140 * 22 21 17 24 24 C 1.53006 * 109.82936 * 49.97911 * 23 22 21 25 25 C 1.50655 * 130.33721 * 180.43429 * 20 19 18 26 26 C 1.55154 * 102.94127 * 337.80934 * 11 10 9 27 27 H 1.09003 * 111.00784 * 277.43139 * 26 11 10 28 28 O 1.42898 * 111.00861 * 153.57735 * 26 11 10 29 29 C 1.47427 * 125.64573 * 359.96259 * 9 7 2 30 30 H 0.96998 * 119.99915 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88530 * 59.49415 * 10 9 7 32 32 H 1.09003 * 110.01530 * 298.39764 * 10 9 7 33 33 H 1.08999 * 109.47221 * 173.54633 * 13 11 10 34 34 H 1.08999 * 109.47545 * 53.54158 * 13 11 10 35 35 H 0.96998 * 119.99991 * 359.97438 * 14 13 11 36 36 H 1.09003 * 109.75293 * 283.35863 * 22 21 17 37 37 H 1.09004 * 109.74989 * 44.09342 * 22 21 17 38 38 H 1.09008 * 109.37691 * 289.88724 * 23 22 21 39 39 H 1.09004 * 109.37484 * 170.07309 * 23 22 21 40 40 H 1.09001 * 109.37891 * 168.12163 * 24 23 22 41 41 H 1.09006 * 109.37729 * 48.45578 * 24 23 22 42 42 H 1.08997 * 109.73919 * 282.82736 * 25 20 19 43 43 H 1.08998 * 109.73647 * 43.53429 * 25 20 19 44 44 H 0.96700 * 114.00472 * 180.02562 * 28 26 11 45 45 H 1.08998 * 110.36407 * 322.99603 * 29 9 7 46 46 H 1.08996 * 110.36800 * 85.21482 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9318 -3.7274 0.0005 11 6 0.7785 -4.7525 0.0286 12 1 0.5475 -5.1008 -0.9780 13 6 1.1236 -5.9309 0.9413 14 7 2.2391 -6.6851 0.3642 15 6 2.7177 -7.7728 1.0000 16 8 2.2233 -8.1285 2.0523 17 6 3.8405 -8.5326 0.4185 18 8 4.4944 -8.2688 -0.7349 19 7 5.3762 -9.0779 -0.9431 20 6 5.4442 -9.9614 -0.0046 21 6 4.4302 -9.6376 0.9289 22 6 4.1526 -10.4225 2.1779 23 6 4.8439 -11.7870 2.0454 24 6 6.3029 -11.5913 1.6281 25 6 6.3743 -11.1344 0.1650 26 6 -0.4013 -3.9321 0.6139 27 1 -0.3511 -3.8974 1.7022 28 8 -1.6566 -4.4573 0.1776 29 6 -0.1415 -2.5332 0.0008 30 1 -0.4850 0.8400 -0.0004 31 1 2.5588 -3.8506 0.8837 32 1 2.5294 -3.8665 -0.9004 33 1 0.2553 -6.5828 1.0371 34 1 1.4079 -5.5575 1.9251 35 1 2.6333 -6.4016 -0.4755 36 1 4.5497 -9.8912 3.0428 37 1 3.0778 -10.5636 2.2930 38 1 4.3282 -12.3821 1.2916 39 1 4.8075 -12.3054 3.0036 40 1 6.8405 -12.5329 1.7397 41 1 6.7632 -10.8361 2.2654 42 1 6.0634 -11.9483 -0.4898 43 1 7.3935 -10.8341 -0.0782 44 1 -2.4237 -3.9766 0.5177 45 1 -0.5992 -1.7585 0.6160 46 1 -0.5276 -2.4856 -1.0174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958257754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:17 Heat of formation + Delta-G solvation = -8.477870 kcal Electronic energy + Delta-G solvation = -28838.636670 eV Core-core repulsion = 24731.815308 eV Total energy + Delta-G solvation = -4106.821362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.18538 -39.81874 -38.30278 -38.01463 -35.27177 -34.76889 -33.22604 -32.65346 -32.28051 -30.43661 -29.55059 -27.61748 -25.95180 -25.27354 -24.04597 -23.50721 -22.60900 -20.79329 -20.39110 -20.04918 -19.70363 -18.26092 -17.94784 -17.08110 -16.80088 -16.06934 -15.99494 -15.45989 -15.32352 -15.01821 -14.72797 -14.37639 -14.19761 -14.08947 -13.78616 -13.48568 -13.06253 -12.97357 -12.92189 -12.80149 -12.44777 -12.07345 -12.00831 -11.60957 -11.39965 -11.35334 -11.27974 -11.02132 -10.90922 -10.83982 -10.67640 -10.46521 -10.19228 -10.08973 -9.92164 -9.73451 -9.71316 -9.21483 -9.11732 -8.73099 -6.93829 -5.73870 -3.16420 0.63674 1.80934 2.44212 2.86811 3.11397 3.36234 3.41411 3.43124 3.57529 4.14868 4.36760 4.39553 4.43153 4.59142 4.65553 4.70927 4.85966 4.96718 5.03220 5.08456 5.17098 5.17965 5.36949 5.40405 5.42297 5.44094 5.54131 5.60588 5.62636 5.70981 5.85666 5.86807 5.89558 5.94676 5.99886 6.14137 6.22922 6.37440 6.54617 6.76764 7.23840 7.32801 7.52230 7.71753 7.80887 7.93347 8.12638 8.26156 9.12428 9.73172 10.35914 11.30214 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.002386 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.886134 B =11731.686988 C =12668.268120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.140 3.860 11 C -0.106 4.106 12 H 0.088 0.912 13 C 0.132 3.868 14 N -0.707 5.707 15 C 0.604 3.396 16 O -0.514 6.514 17 C -0.077 4.077 18 O 0.102 5.898 19 N -0.333 5.333 20 C 0.015 3.985 21 C -0.122 4.122 22 C -0.049 4.049 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.040 4.040 26 C 0.082 3.918 27 H 0.062 0.938 28 O -0.569 6.569 29 C 0.128 3.872 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.409 0.591 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.378 0.622 45 H 0.110 0.890 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -22.836 3.281 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.010 3.990 14 N -0.357 5.357 15 C 0.387 3.613 16 O -0.390 6.390 17 C -0.141 4.141 18 O 0.032 5.968 19 N -0.035 5.035 20 C -0.146 4.146 21 C -0.127 4.127 22 C -0.086 4.086 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.078 4.078 26 C 0.022 3.978 27 H 0.080 0.920 28 O -0.374 6.374 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.244 0.756 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.127 0.873 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.016 -23.047 2.619 24.541 hybrid contribution 0.080 1.270 0.256 1.298 sum 8.095 -21.777 2.874 23.410 Atomic orbital electron populations 1.69759 1.04943 1.24956 1.57511 1.24806 0.95776 0.97863 1.02184 0.86035 0.78534 0.83072 0.77631 1.21544 1.21592 1.20621 1.19092 0.90569 0.82233 1.43321 0.90253 1.44311 1.01603 0.99812 1.87071 1.21382 0.93282 0.85510 0.98475 1.22422 0.96390 0.94035 0.99702 0.89333 1.21569 0.87958 0.92386 0.97122 1.45967 1.35795 1.27498 1.26440 1.16464 0.80484 0.80318 0.84027 1.90853 1.58392 1.68236 1.21531 1.23491 1.00131 0.99981 0.90514 1.85273 1.34763 1.42196 1.34518 1.73446 1.06030 1.01800 1.22260 1.23421 0.99792 0.99414 0.91982 1.21106 0.95921 0.95820 0.99860 1.20115 1.02451 0.93804 0.92261 1.21677 0.95304 0.96574 1.02360 1.21626 0.97307 1.02094 0.94730 1.20127 0.97179 0.92237 0.98258 1.23309 0.82090 0.95466 0.96975 0.92033 1.86366 1.15727 1.58900 1.76402 1.22556 0.85340 0.92515 0.99340 0.93610 0.95277 0.95575 0.90562 0.90666 0.75564 0.89345 0.88861 0.91422 0.90544 0.90409 0.91181 0.89306 0.89404 0.77561 0.87276 0.95930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -14.89 3.39 -170.06 -0.58 -15.47 16 10 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 11 C -0.11 -1.78 2.75 -88.79 -0.24 -2.02 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 13 C 0.13 1.91 4.99 -4.04 -0.02 1.89 16 14 N -0.71 -9.25 5.40 -61.36 -0.33 -9.58 16 15 C 0.60 8.31 7.82 -12.48 -0.10 8.22 16 16 O -0.51 -8.14 15.94 5.29 0.08 -8.06 16 17 C -0.08 -0.97 7.28 -36.87 -0.27 -1.24 16 18 O 0.10 1.32 11.10 13.83 0.15 1.47 16 19 N -0.33 -4.27 12.03 33.15 0.40 -3.87 16 20 C 0.01 0.16 7.22 -82.50 -0.60 -0.44 16 21 C -0.12 -1.38 6.03 -104.70 -0.63 -2.01 16 22 C -0.05 -0.44 5.59 -27.89 -0.16 -0.60 16 23 C -0.12 -0.76 5.87 -26.45 -0.16 -0.92 16 24 C -0.12 -0.68 5.84 -26.50 -0.15 -0.83 16 25 C -0.04 -0.29 6.32 -27.67 -0.17 -0.46 16 26 C 0.08 1.50 3.88 -24.57 -0.10 1.41 16 27 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 28 O -0.57 -9.46 13.47 -35.23 -0.47 -9.93 16 29 C 0.13 2.99 5.62 -2.51 -0.01 2.97 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.41 4.81 8.17 -40.82 -0.33 4.48 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.91 7.78 -51.93 -0.40 0.51 16 38 H 0.07 0.42 8.11 -51.92 -0.42 0.00 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.43 8.10 -51.93 -0.42 0.00 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.38 4.85 9.12 45.56 0.42 5.26 16 45 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -32.17 374.21 -8.51 -40.68 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.06 Total: 6.05 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.88 Total: 2.04 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.05 Total: -54.57 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.24 Total: -16.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.17 -8.51 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.198 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds