Wall clock time and date at job start Tue Mar 31 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86790 * 119.99982 * 2 1 4 4 H 1.48504 * 109.47510 * 269.99824 * 3 2 1 5 5 H 1.48505 * 109.47372 * 30.00129 * 3 2 1 6 6 H 1.48503 * 109.47528 * 149.99952 * 3 2 1 7 7 C 1.38813 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99569 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.47014 * 125.64792 * 179.97438 * 9 7 2 11 11 C 1.54327 * 107.27229 * 178.90754 * 10 9 7 12 12 H 1.08992 * 110.72265 * 96.34662 * 11 10 9 13 13 C 1.52998 * 110.72320 * 219.44903 * 11 10 9 14 14 N 1.46501 * 109.46962 * 293.54277 * 13 11 10 15 15 C 1.34771 * 120.00302 * 179.97438 * 14 13 11 16 16 O 1.21582 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.47514 * 120.00195 * 179.97438 * 15 14 13 18 18 O 1.35187 * 127.15442 * 0.04731 * 17 15 14 19 19 N 1.21475 * 111.55347 * 179.91399 * 18 17 15 20 20 C 1.29070 * 111.68698 * 359.89396 * 19 18 17 21 21 C 1.35255 * 127.15111 * 180.02562 * 17 15 14 22 22 C 1.50103 * 131.34280 * 0.47054 * 21 17 15 23 23 C 1.53539 * 108.03416 * 163.74140 * 22 21 17 24 24 C 1.53006 * 109.82936 * 49.97911 * 23 22 21 25 25 C 1.50655 * 130.33721 * 180.43429 * 20 19 18 26 26 C 1.55154 * 102.94127 * 337.80934 * 11 10 9 27 27 H 1.09003 * 111.00784 * 277.43139 * 26 11 10 28 28 O 1.42898 * 111.00861 * 153.57735 * 26 11 10 29 29 C 1.47427 * 125.64573 * 359.96259 * 9 7 2 30 30 H 0.96998 * 119.99915 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88530 * 59.49415 * 10 9 7 32 32 H 1.09003 * 110.01530 * 298.39764 * 10 9 7 33 33 H 1.08999 * 109.47221 * 173.54633 * 13 11 10 34 34 H 1.08999 * 109.47545 * 53.54158 * 13 11 10 35 35 H 0.96998 * 119.99991 * 359.97438 * 14 13 11 36 36 H 1.09003 * 109.75293 * 283.35863 * 22 21 17 37 37 H 1.09004 * 109.74989 * 44.09342 * 22 21 17 38 38 H 1.09008 * 109.37691 * 289.88724 * 23 22 21 39 39 H 1.09004 * 109.37484 * 170.07309 * 23 22 21 40 40 H 1.09001 * 109.37891 * 168.12163 * 24 23 22 41 41 H 1.09006 * 109.37729 * 48.45578 * 24 23 22 42 42 H 1.08997 * 109.73919 * 282.82736 * 25 20 19 43 43 H 1.08998 * 109.73647 * 43.53429 * 25 20 19 44 44 H 0.96700 * 114.00472 * 180.02562 * 28 26 11 45 45 H 1.08998 * 110.36407 * 322.99603 * 29 9 7 46 46 H 1.08996 * 110.36800 * 85.21482 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9318 -3.7274 0.0005 11 6 0.7785 -4.7525 0.0286 12 1 0.5475 -5.1008 -0.9780 13 6 1.1236 -5.9309 0.9413 14 7 2.2391 -6.6851 0.3642 15 6 2.7177 -7.7728 1.0000 16 8 2.2233 -8.1285 2.0523 17 6 3.8405 -8.5326 0.4185 18 8 4.4944 -8.2688 -0.7349 19 7 5.3762 -9.0779 -0.9431 20 6 5.4442 -9.9614 -0.0046 21 6 4.4302 -9.6376 0.9289 22 6 4.1526 -10.4225 2.1779 23 6 4.8439 -11.7870 2.0454 24 6 6.3029 -11.5913 1.6281 25 6 6.3743 -11.1344 0.1650 26 6 -0.4013 -3.9321 0.6139 27 1 -0.3511 -3.8974 1.7022 28 8 -1.6566 -4.4573 0.1776 29 6 -0.1415 -2.5332 0.0008 30 1 -0.4850 0.8400 -0.0004 31 1 2.5588 -3.8506 0.8837 32 1 2.5294 -3.8665 -0.9004 33 1 0.2553 -6.5828 1.0371 34 1 1.4079 -5.5575 1.9251 35 1 2.6333 -6.4016 -0.4755 36 1 4.5497 -9.8912 3.0428 37 1 3.0778 -10.5636 2.2930 38 1 4.3282 -12.3821 1.2916 39 1 4.8075 -12.3054 3.0036 40 1 6.8405 -12.5329 1.7397 41 1 6.7632 -10.8361 2.2654 42 1 6.0634 -11.9483 -0.4898 43 1 7.3935 -10.8341 -0.0782 44 1 -2.4237 -3.9766 0.5177 45 1 -0.5992 -1.7585 0.6160 46 1 -0.5276 -2.4856 -1.0174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958257754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:16 Heat of formation + Delta-G solvation = -31.739287 kcal Electronic energy + Delta-G solvation = -28839.645361 eV Core-core repulsion = 24731.815308 eV Total energy + Delta-G solvation = -4107.830053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.07876 -40.98781 -39.76924 -38.72161 -36.66117 -36.24336 -34.25057 -33.87207 -33.39959 -31.67303 -30.72113 -29.29128 -27.44799 -26.25523 -25.38576 -24.27302 -23.76739 -22.31313 -21.55956 -21.16017 -20.72854 -19.31864 -18.87944 -18.84967 -18.29948 -17.23776 -17.06255 -16.85655 -16.47835 -16.03794 -15.73491 -15.68849 -15.36779 -14.99492 -14.87173 -14.74452 -14.38593 -14.30907 -14.02463 -13.68609 -13.66587 -13.40271 -13.27176 -13.11271 -12.85866 -12.76276 -12.41166 -12.33767 -11.95870 -11.89441 -11.89130 -11.86901 -11.62273 -11.47301 -11.26536 -11.00276 -10.83149 -10.73791 -10.66672 -10.22832 -8.93083 -7.80585 -5.25701 -0.33418 0.96296 1.44494 1.47103 1.48229 1.56991 1.81407 2.08682 2.47042 2.83627 3.18963 3.29619 3.35825 3.56882 3.66426 3.74742 3.80454 3.89767 3.94699 3.97859 4.10491 4.29044 4.37002 4.41289 4.42339 4.45480 4.52690 4.59320 4.70624 4.84702 4.87117 4.89505 4.94739 4.97629 5.10100 5.13609 5.16083 5.28448 5.29089 5.39913 5.42912 5.48075 5.73892 6.17050 6.24818 6.78514 6.90187 6.97006 7.07295 7.73268 8.35547 9.21191 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.002386 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.886134 B =11731.686988 C =12668.268120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.090 4.090 12 H 0.092 0.908 13 C 0.146 3.854 14 N -0.702 5.702 15 C 0.609 3.391 16 O -0.536 6.536 17 C -0.094 4.094 18 O 0.089 5.911 19 N -0.355 5.355 20 C 0.020 3.980 21 C -0.121 4.121 22 C -0.052 4.052 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.043 4.043 26 C 0.099 3.901 27 H 0.072 0.928 28 O -0.568 6.568 29 C 0.132 3.868 30 H 0.248 0.752 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.395 0.605 45 H 0.080 0.920 46 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 -25.042 3.900 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.109 4.109 12 H 0.111 0.889 13 C 0.023 3.977 14 N -0.352 5.352 15 C 0.393 3.607 16 O -0.415 6.415 17 C -0.158 4.158 18 O 0.022 5.978 19 N -0.060 5.060 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.089 4.089 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.081 4.081 26 C 0.038 3.962 27 H 0.090 0.910 28 O -0.375 6.375 29 C 0.006 3.994 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.244 0.756 45 H 0.098 0.902 46 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 9.405 -25.262 3.229 27.149 hybrid contribution -0.346 1.907 0.041 1.938 sum 9.060 -23.355 3.270 25.264 Atomic orbital electron populations 1.70001 1.06147 1.25158 1.58484 1.25628 0.96682 1.00990 1.02560 0.85047 0.77670 0.79034 0.77384 1.21513 1.21865 1.19414 1.19456 0.91083 0.83547 1.42706 0.89923 1.44596 1.02422 1.01028 1.87021 1.21534 0.94362 0.84062 0.98821 1.22250 0.94463 0.93800 1.00410 0.88926 1.21328 0.88624 0.91549 0.96207 1.45861 1.35447 1.27284 1.26637 1.16503 0.80449 0.80128 0.83639 1.90836 1.59249 1.68878 1.22488 1.23384 1.00539 1.00752 0.91157 1.85247 1.35156 1.42691 1.34723 1.73432 1.06552 1.02663 1.23380 1.24068 0.99693 0.99568 0.90814 1.21536 0.95394 0.95198 1.00455 1.20241 1.02274 0.95244 0.91162 1.21692 0.95405 0.94776 1.03603 1.21649 0.97040 1.03278 0.93377 1.20395 0.96765 0.91146 0.99758 1.22971 0.83423 0.92652 0.97117 0.90978 1.86342 1.15779 1.58792 1.76633 1.22346 0.84732 0.95002 0.97285 0.94205 0.94736 0.94891 0.89893 0.90962 0.74770 0.89254 0.89814 0.91155 0.88625 0.87690 0.91570 0.87749 0.88477 0.75568 0.90208 0.99078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.32 10.09 21.65 0.22 -55.10 16 2 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 3 Si 0.98 45.08 29.55 68.60 2.03 47.10 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.16 10.27 84.03 0.86 -12.30 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -31.28 3.39 -691.95 -2.35 -33.63 16 10 C 0.14 5.34 6.52 86.73 0.57 5.91 16 11 C -0.09 -2.92 2.75 -9.61 -0.03 -2.94 16 12 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 13 C 0.15 4.01 4.99 86.38 0.43 4.45 16 14 N -0.70 -17.71 5.40 -466.31 -2.52 -20.22 16 15 C 0.61 16.39 7.82 86.69 0.68 17.07 16 16 O -0.54 -16.65 15.94 -3.97 -0.06 -16.72 16 17 C -0.09 -2.35 7.28 24.03 0.17 -2.18 16 18 O 0.09 2.27 11.10 59.49 0.66 2.93 16 19 N -0.35 -8.88 12.03 -50.84 -0.61 -9.49 16 20 C 0.02 0.40 7.22 43.77 0.32 0.71 16 21 C -0.12 -2.62 6.03 -19.92 -0.12 -2.74 16 22 C -0.05 -0.87 5.59 29.84 0.17 -0.70 16 23 C -0.12 -1.15 5.87 30.78 0.18 -0.97 16 24 C -0.12 -0.94 5.84 30.75 0.18 -0.76 16 25 C -0.04 -0.50 6.32 29.98 0.19 -0.31 16 26 C 0.10 3.56 3.88 31.99 0.12 3.69 16 27 H 0.07 2.48 8.05 -2.39 -0.02 2.46 16 28 O -0.57 -18.15 13.47 -148.98 -2.01 -20.16 16 29 C 0.13 6.31 5.62 86.86 0.49 6.80 16 30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 35 H 0.42 9.44 8.17 -92.71 -0.76 8.69 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 38 H 0.07 0.68 8.11 -2.38 -0.02 0.66 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.07 0.62 8.10 -2.38 -0.02 0.60 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.39 9.65 9.12 -74.06 -0.68 8.97 16 45 H 0.08 4.30 5.87 -2.39 -0.01 4.28 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: -1.00 -70.27 374.21 -0.37 -70.64 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.41 Total: 22.15 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 4.68 Total: 12.50 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.26 Total: -118.45 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.41 Total: -33.95 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.27 -0.37 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.900 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds