Wall clock time and date at job start Tue Mar 31 2020 18:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48506 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47389 * 60.00033 * 3 2 1 6 6 H 1.48500 * 109.47406 * 299.99442 * 3 2 1 7 7 C 1.38813 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 34.51187 * 7 2 1 9 9 N 1.36936 * 119.99647 * 214.50307 * 7 2 1 10 10 C 1.47016 * 125.65072 * 25.68405 * 9 7 2 11 11 C 1.54333 * 107.26692 * 178.84607 * 10 9 7 12 12 H 1.09002 * 110.85082 * 219.66694 * 11 10 9 13 13 O 1.42901 * 110.66886 * 96.51975 * 11 10 9 14 14 C 1.55152 * 103.02099 * 338.13752 * 11 10 9 15 15 H 1.08999 * 111.00360 * 277.23516 * 14 11 10 16 16 C 1.53005 * 111.03731 * 153.39685 * 14 11 10 17 17 N 1.46506 * 109.46887 * 181.33482 * 16 14 11 18 18 C 1.34775 * 119.99914 * 180.02562 * 17 16 14 19 19 O 1.21502 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.48325 * 120.00312 * 179.97438 * 18 17 16 21 21 N 1.31503 * 127.15191 * 359.68024 * 20 18 17 22 22 O 1.21428 * 111.52404 * 179.80103 * 21 20 18 23 23 C 1.33187 * 111.57295 * 0.44033 * 22 21 20 24 24 C 1.35388 * 106.63396 * 359.78038 * 23 22 21 25 25 C 1.50057 * 124.93653 * 179.82510 * 24 23 22 26 26 C 1.53545 * 108.23665 * 343.88470 * 25 24 23 27 27 C 1.53107 * 109.51360 * 49.19592 * 26 25 24 28 28 C 1.50598 * 129.61171 * 179.81454 * 23 22 21 29 29 C 1.47427 * 125.64518 * 205.98267 * 9 7 2 30 30 H 0.97001 * 120.00145 * 185.08505 * 1 2 3 31 31 H 1.09008 * 109.88212 * 298.38666 * 10 9 7 32 32 H 1.08996 * 109.88703 * 59.55349 * 10 9 7 33 33 H 0.96707 * 113.99813 * 66.41410 * 13 11 10 34 34 H 1.09001 * 109.46973 * 301.33117 * 16 14 11 35 35 H 1.08992 * 109.47291 * 61.33332 * 16 14 11 36 36 H 0.96998 * 120.00424 * 359.97438 * 17 16 14 37 37 H 1.09010 * 109.71113 * 103.57073 * 25 24 23 38 38 H 1.09001 * 109.70944 * 224.19687 * 25 24 23 39 39 H 1.08999 * 109.46449 * 169.21121 * 26 25 24 40 40 H 1.09000 * 109.46372 * 289.18433 * 26 25 24 41 41 H 1.09006 * 109.42213 * 50.23882 * 27 26 25 42 42 H 1.09000 * 109.42751 * 170.07597 * 27 26 25 43 43 H 1.09000 * 109.69148 * 43.53170 * 28 23 22 44 44 H 1.08995 * 109.69424 * 282.94785 * 28 23 22 45 45 H 1.09000 * 110.36901 * 322.93653 * 29 9 7 46 46 H 1.09007 * 110.36561 * 85.15136 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 1.6128 -2.0554 -0.5290 9 7 3.1989 -1.3061 0.6724 10 6 3.6067 -0.4882 1.8239 11 6 5.0026 -0.9788 2.2630 12 1 5.0835 -0.9965 3.3498 13 8 6.0267 -0.1599 1.6949 14 6 5.0656 -2.4170 1.6843 15 1 4.5676 -3.1263 2.3453 16 6 6.5121 -2.8400 1.4205 17 7 6.5298 -4.1877 0.8463 18 6 7.7034 -4.7705 0.5309 19 8 8.7467 -4.1780 0.7225 20 6 7.7214 -6.1352 -0.0499 21 7 6.6848 -6.9016 -0.3095 22 8 7.0253 -7.9648 -0.7871 23 6 8.3496 -8.0490 -0.9004 24 6 8.8536 -6.8827 -0.4329 25 6 10.3135 -6.5417 -0.3688 26 6 11.1176 -7.8404 -0.5246 27 6 10.5972 -8.6222 -1.7338 28 6 9.1983 -9.1746 -1.4304 29 6 4.2843 -2.2526 0.3567 30 1 -0.4850 -0.8367 0.0745 31 1 3.6548 0.5617 1.5345 32 1 2.8966 -0.6176 2.6406 33 1 6.0307 0.7495 2.0237 34 1 6.9734 -2.1415 0.7224 35 1 7.0682 -2.8372 2.3579 36 1 5.6969 -4.6609 0.6936 37 1 10.5662 -5.8538 -1.1758 38 1 10.5416 -6.0811 0.5924 39 1 12.1704 -7.6002 -0.6731 40 1 11.0068 -8.4463 0.3747 41 1 10.5461 -7.9606 -2.5985 42 1 11.2743 -9.4486 -1.9500 43 1 8.7540 -9.5711 -2.3433 44 1 9.2694 -9.9645 -0.6827 45 1 3.8720 -3.2100 0.0381 46 1 4.9319 -1.8424 -0.4182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958430771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:17 Heat of formation + Delta-G solvation = -4.712141 kcal Electronic energy + Delta-G solvation = -28991.000640 eV Core-core repulsion = 24884.342572 eV Total energy + Delta-G solvation = -4106.658068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.32762 -39.77933 -38.56876 -38.00160 -35.17684 -34.75478 -34.13230 -32.35570 -31.32072 -30.77481 -30.08966 -28.01829 -26.24608 -24.97220 -24.12614 -23.13632 -22.74466 -21.00655 -20.53720 -19.94962 -19.59047 -18.10336 -17.91060 -17.85206 -16.92447 -16.62920 -15.77188 -15.46742 -15.31802 -15.03529 -14.43473 -14.40626 -14.33083 -14.13145 -13.84681 -13.61275 -13.52210 -13.36452 -13.21472 -12.76284 -12.72487 -12.26992 -11.98911 -11.72733 -11.44071 -11.38244 -11.29153 -11.09867 -11.01028 -10.74544 -10.64085 -10.47096 -10.46067 -10.14215 -9.92912 -9.39462 -9.38568 -9.29528 -9.08136 -8.37157 -7.01470 -6.41197 -3.28033 0.90780 1.42659 2.57944 2.89873 3.06785 3.44065 3.53797 3.69384 3.77368 4.17102 4.29427 4.37786 4.41887 4.59396 4.61166 4.66815 4.79799 4.81041 4.99047 5.05258 5.06549 5.12481 5.18741 5.20046 5.31737 5.38195 5.38963 5.50339 5.57128 5.62779 5.66976 5.74936 5.80638 5.84044 5.95004 6.12962 6.15191 6.32326 6.43841 6.53892 6.61984 6.81180 7.32356 7.77871 7.85114 7.92241 8.02504 8.35057 8.96342 9.55770 10.29497 11.01542 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.002452 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.199843 B =11417.640198 C =12194.625511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.001 3.999 3 Si 1.032 2.968 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.297 1.297 7 C -0.342 4.342 8 H 0.070 0.930 9 N -0.598 5.598 10 C 0.096 3.904 11 C 0.100 3.900 12 H 0.066 0.934 13 O -0.558 6.558 14 C -0.110 4.110 15 H 0.092 0.908 16 C 0.140 3.860 17 N -0.709 5.709 18 C 0.597 3.403 19 O -0.523 6.523 20 C -0.015 4.015 21 N -0.334 5.334 22 O 0.129 5.871 23 C -0.040 4.040 24 C -0.152 4.152 25 C -0.045 4.045 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.035 4.035 29 C 0.136 3.864 30 H 0.268 0.732 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.377 0.623 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.407 0.593 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.420 -17.632 1.378 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.203 4.203 3 Si 0.862 3.138 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.469 4.469 8 H 0.087 0.913 9 N -0.326 5.326 10 C -0.030 4.030 11 C 0.040 3.960 12 H 0.083 0.917 13 O -0.364 6.364 14 C -0.129 4.129 15 H 0.111 0.889 16 C 0.017 3.983 17 N -0.360 5.360 18 C 0.381 3.619 19 O -0.397 6.397 20 C -0.174 4.174 21 N -0.036 5.036 22 O 0.055 5.945 23 C -0.105 4.105 24 C -0.157 4.157 25 C -0.083 4.083 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.073 4.073 29 C 0.011 3.989 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.224 0.776 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.243 0.757 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.059 0.941 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 21.671 -15.878 1.261 26.895 hybrid contribution 0.070 -1.108 0.239 1.136 sum 21.741 -16.986 1.500 27.631 Atomic orbital electron populations 1.70863 1.06757 1.29814 1.46242 1.26069 0.95977 1.00805 0.97429 0.84363 0.76158 0.76864 0.76464 1.20010 1.22133 1.22458 1.19818 0.95077 0.97931 1.34104 0.91282 1.44623 1.15410 1.41076 1.31469 1.22357 0.93125 0.96114 0.91394 1.22718 0.87763 0.90188 0.95294 0.91663 1.86455 1.53856 1.25628 1.70448 1.22687 0.94683 0.95374 1.00203 0.88942 1.21258 0.96675 0.81303 0.99056 1.45969 1.08355 1.18492 1.63221 1.16809 0.84411 0.82587 0.78142 1.90785 1.31929 1.63243 1.53792 1.23075 0.90253 0.98028 1.05996 1.74607 1.22931 0.93477 1.12626 1.84691 1.22453 1.29103 1.58234 1.24149 0.83348 0.99441 1.03526 1.20659 0.97804 0.93305 1.03974 1.20009 0.86510 0.97625 1.04117 1.21722 0.99863 0.96074 0.98453 1.21661 0.94332 1.00658 0.99045 1.20267 0.92414 0.92736 1.01844 1.21685 0.90037 0.94426 0.92800 0.92240 0.94449 0.94071 0.77622 0.89667 0.91282 0.75747 0.89780 0.89209 0.90544 0.91357 0.90935 0.90001 0.88781 0.88686 0.94115 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.70 55.49 0.76 -27.09 16 2 C 0.00 0.03 5.29 -17.43 -0.09 -0.06 16 3 Si 1.03 26.09 26.22 -169.99 -4.46 21.63 16 4 H -0.27 -6.60 6.16 56.52 0.35 -6.25 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.34 -9.86 10.24 -15.06 -0.15 -10.01 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 N -0.60 -14.79 3.06 -170.06 -0.52 -15.32 16 10 C 0.10 2.04 5.80 -3.06 -0.02 2.02 16 11 C 0.10 1.67 4.09 -24.89 -0.10 1.57 16 12 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 13 O -0.56 -9.00 12.09 -35.23 -0.43 -9.42 16 14 C -0.11 -1.81 3.03 -88.47 -0.27 -2.08 16 15 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.14 2.14 4.74 -4.04 -0.02 2.12 16 17 N -0.71 -10.44 5.40 -61.09 -0.33 -10.77 16 18 C 0.60 9.19 7.85 -12.11 -0.10 9.10 16 19 O -0.52 -9.02 16.09 5.36 0.09 -8.94 16 20 C -0.02 -0.21 7.19 -82.82 -0.60 -0.81 16 21 N -0.33 -4.54 11.89 33.29 0.40 -4.14 16 22 O 0.13 1.48 11.18 19.20 0.21 1.69 16 23 C -0.04 -0.38 7.38 -35.37 -0.26 -0.64 16 24 C -0.15 -1.71 6.04 -104.91 -0.63 -2.35 16 25 C -0.05 -0.41 5.66 -27.91 -0.16 -0.57 16 26 C -0.12 -0.70 5.92 -26.39 -0.16 -0.86 16 27 C -0.12 -0.53 5.88 -26.46 -0.16 -0.69 16 28 C -0.03 -0.17 6.31 -27.71 -0.17 -0.35 16 29 C 0.14 2.83 6.40 -2.53 -0.02 2.81 16 30 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 31 H 0.04 0.84 3.76 -51.92 -0.20 0.64 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.38 4.55 9.12 45.56 0.42 4.96 16 34 H 0.09 1.47 7.43 -51.93 -0.39 1.09 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.41 5.73 8.11 -40.82 -0.33 5.40 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.09 0.92 7.84 -51.93 -0.41 0.51 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.03 0.61 8.01 -51.93 -0.42 0.20 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -35.15 370.53 -7.61 -42.76 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.02 Total: 4.82 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.90 Total: -0.80 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.31 Total: -57.32 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.13 Total: -16.67 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.46 Total: 21.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.15 -7.61 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958430771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.047 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds