Wall clock time and date at job start Tue Mar 31 2020 18:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48506 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47389 * 60.00033 * 3 2 1 6 6 H 1.48500 * 109.47406 * 299.99442 * 3 2 1 7 7 C 1.38813 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 34.51187 * 7 2 1 9 9 N 1.36936 * 119.99647 * 214.50307 * 7 2 1 10 10 C 1.47016 * 125.65072 * 25.68405 * 9 7 2 11 11 C 1.54333 * 107.26692 * 178.84607 * 10 9 7 12 12 H 1.09002 * 110.85082 * 219.66694 * 11 10 9 13 13 O 1.42901 * 110.66886 * 96.51975 * 11 10 9 14 14 C 1.55152 * 103.02099 * 338.13752 * 11 10 9 15 15 H 1.08999 * 111.00360 * 277.23516 * 14 11 10 16 16 C 1.53005 * 111.03731 * 153.39685 * 14 11 10 17 17 N 1.46506 * 109.46887 * 181.33482 * 16 14 11 18 18 C 1.34775 * 119.99914 * 180.02562 * 17 16 14 19 19 O 1.21502 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.48325 * 120.00312 * 179.97438 * 18 17 16 21 21 N 1.31503 * 127.15191 * 359.68024 * 20 18 17 22 22 O 1.21428 * 111.52404 * 179.80103 * 21 20 18 23 23 C 1.33187 * 111.57295 * 0.44033 * 22 21 20 24 24 C 1.35388 * 106.63396 * 359.78038 * 23 22 21 25 25 C 1.50057 * 124.93653 * 179.82510 * 24 23 22 26 26 C 1.53545 * 108.23665 * 343.88470 * 25 24 23 27 27 C 1.53107 * 109.51360 * 49.19592 * 26 25 24 28 28 C 1.50598 * 129.61171 * 179.81454 * 23 22 21 29 29 C 1.47427 * 125.64518 * 205.98267 * 9 7 2 30 30 H 0.97001 * 120.00145 * 185.08505 * 1 2 3 31 31 H 1.09008 * 109.88212 * 298.38666 * 10 9 7 32 32 H 1.08996 * 109.88703 * 59.55349 * 10 9 7 33 33 H 0.96707 * 113.99813 * 66.41410 * 13 11 10 34 34 H 1.09001 * 109.46973 * 301.33117 * 16 14 11 35 35 H 1.08992 * 109.47291 * 61.33332 * 16 14 11 36 36 H 0.96998 * 120.00424 * 359.97438 * 17 16 14 37 37 H 1.09010 * 109.71113 * 103.57073 * 25 24 23 38 38 H 1.09001 * 109.70944 * 224.19687 * 25 24 23 39 39 H 1.08999 * 109.46449 * 169.21121 * 26 25 24 40 40 H 1.09000 * 109.46372 * 289.18433 * 26 25 24 41 41 H 1.09006 * 109.42213 * 50.23882 * 27 26 25 42 42 H 1.09000 * 109.42751 * 170.07597 * 27 26 25 43 43 H 1.09000 * 109.69148 * 43.53170 * 28 23 22 44 44 H 1.08995 * 109.69424 * 282.94785 * 28 23 22 45 45 H 1.09000 * 110.36901 * 322.93653 * 29 9 7 46 46 H 1.09007 * 110.36561 * 85.15136 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 1.6128 -2.0554 -0.5290 9 7 3.1989 -1.3061 0.6724 10 6 3.6067 -0.4882 1.8239 11 6 5.0026 -0.9788 2.2630 12 1 5.0835 -0.9965 3.3498 13 8 6.0267 -0.1599 1.6949 14 6 5.0656 -2.4170 1.6843 15 1 4.5676 -3.1263 2.3453 16 6 6.5121 -2.8400 1.4205 17 7 6.5298 -4.1877 0.8463 18 6 7.7034 -4.7705 0.5309 19 8 8.7467 -4.1780 0.7225 20 6 7.7214 -6.1352 -0.0499 21 7 6.6848 -6.9016 -0.3095 22 8 7.0253 -7.9648 -0.7871 23 6 8.3496 -8.0490 -0.9004 24 6 8.8536 -6.8827 -0.4329 25 6 10.3135 -6.5417 -0.3688 26 6 11.1176 -7.8404 -0.5246 27 6 10.5972 -8.6222 -1.7338 28 6 9.1983 -9.1746 -1.4304 29 6 4.2843 -2.2526 0.3567 30 1 -0.4850 -0.8367 0.0745 31 1 3.6548 0.5617 1.5345 32 1 2.8966 -0.6176 2.6406 33 1 6.0307 0.7495 2.0237 34 1 6.9734 -2.1415 0.7224 35 1 7.0682 -2.8372 2.3579 36 1 5.6969 -4.6609 0.6936 37 1 10.5662 -5.8538 -1.1758 38 1 10.5416 -6.0811 0.5924 39 1 12.1704 -7.6002 -0.6731 40 1 11.0068 -8.4463 0.3747 41 1 10.5461 -7.9606 -2.5985 42 1 11.2743 -9.4486 -1.9500 43 1 8.7540 -9.5711 -2.3433 44 1 9.2694 -9.9645 -0.6827 45 1 3.8720 -3.2100 0.0381 46 1 4.9319 -1.8424 -0.4182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958430771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:16 Heat of formation + Delta-G solvation = -31.960698 kcal Electronic energy + Delta-G solvation = -28992.182226 eV Core-core repulsion = 24884.342572 eV Total energy + Delta-G solvation = -4107.839654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.24852 -41.04076 -40.00352 -38.60211 -36.55792 -36.28233 -35.05977 -34.28879 -32.02863 -31.99181 -31.13866 -29.62279 -27.74524 -26.09101 -25.19003 -24.17153 -23.73393 -22.55931 -21.75684 -21.30730 -20.50964 -19.77418 -19.04595 -18.83158 -18.31925 -17.74922 -17.04459 -16.83295 -16.46311 -16.13532 -16.01524 -15.65379 -15.25168 -15.11871 -14.92134 -14.86647 -14.71175 -14.41652 -14.24243 -14.17375 -14.00739 -13.55742 -13.26943 -13.09539 -12.79060 -12.53970 -12.43016 -12.22197 -11.96902 -11.87257 -11.82336 -11.77123 -11.62941 -11.42946 -11.35247 -11.29145 -10.87089 -10.57526 -10.31938 -10.15000 -9.11643 -8.70216 -5.52905 -0.06472 0.57898 1.39435 1.49595 1.69080 1.70739 1.91728 1.94491 2.49712 2.77902 2.87984 3.16261 3.31496 3.44634 3.62054 3.68602 3.74734 3.81468 3.91042 3.99063 4.05881 4.21663 4.24760 4.34112 4.36591 4.46849 4.48762 4.57368 4.61901 4.73537 4.80721 4.87997 4.90785 4.92584 5.00247 5.01558 5.13259 5.17937 5.18574 5.24257 5.33244 5.43583 5.66096 6.11154 6.14356 6.75704 6.76452 6.88309 6.94580 7.42531 8.14758 8.70586 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.002452 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.199843 B =11417.640198 C =12194.625511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.051 4.051 3 Si 1.083 2.917 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.300 1.300 7 C -0.340 4.340 8 H 0.032 0.968 9 N -0.619 5.619 10 C 0.084 3.916 11 C 0.114 3.886 12 H 0.110 0.890 13 O -0.569 6.569 14 C -0.095 4.095 15 H 0.110 0.890 16 C 0.153 3.847 17 N -0.707 5.707 18 C 0.596 3.404 19 O -0.546 6.546 20 C -0.041 4.041 21 N -0.357 5.357 22 O 0.131 5.869 23 C -0.022 4.022 24 C -0.172 4.172 25 C -0.046 4.046 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.035 4.035 29 C 0.135 3.865 30 H 0.255 0.745 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.034 0.966 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.355 -18.809 2.177 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.249 4.249 3 Si 0.908 3.092 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.228 1.228 7 C -0.468 4.468 8 H 0.050 0.950 9 N -0.346 5.346 10 C -0.041 4.041 11 C 0.054 3.946 12 H 0.128 0.872 13 O -0.377 6.377 14 C -0.115 4.115 15 H 0.128 0.872 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.381 3.619 19 O -0.423 6.423 20 C -0.197 4.197 21 N -0.059 5.059 22 O 0.057 5.943 23 C -0.087 4.087 24 C -0.177 4.177 25 C -0.083 4.083 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.073 4.073 29 C 0.010 3.990 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.052 0.948 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 24.623 -17.051 2.082 30.023 hybrid contribution -0.840 -0.881 -0.077 1.220 sum 23.783 -17.932 2.005 29.853 Atomic orbital electron populations 1.70965 1.07777 1.29081 1.49361 1.27214 0.96004 1.04205 0.97465 0.83658 0.75784 0.72947 0.76825 1.18160 1.20453 1.22780 1.19668 0.96654 0.96798 1.33706 0.94970 1.44725 1.15180 1.42266 1.32437 1.22612 0.96082 0.95466 0.89934 1.22670 0.84988 0.89413 0.97492 0.87201 1.86438 1.53047 1.27158 1.71054 1.22596 0.94702 0.96429 0.97751 0.87222 1.21077 0.95657 0.81072 0.99243 1.45956 1.08454 1.18325 1.63099 1.17031 0.84061 0.83155 0.77686 1.90758 1.32599 1.64068 1.54887 1.23070 0.91643 0.97726 1.07306 1.74588 1.23404 0.94215 1.13693 1.84654 1.23801 1.28250 1.57600 1.24984 0.82387 0.99916 1.01376 1.20993 0.98269 0.93767 1.04713 1.20061 0.85961 0.99482 1.02819 1.21730 1.00058 0.94345 0.99473 1.21705 0.94356 1.01353 0.97976 1.20632 0.91784 0.91617 1.03234 1.21733 0.89214 0.93010 0.95081 0.93632 0.94867 0.94387 0.75390 0.91551 0.89646 0.75448 0.90547 0.91010 0.89077 0.90814 0.91543 0.86983 0.86695 0.86288 0.94766 0.96917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.43 13.70 21.65 0.30 -59.13 16 2 C -0.05 -3.05 5.29 84.86 0.45 -2.60 16 3 Si 1.08 53.02 26.22 68.60 1.80 54.82 16 4 H -0.26 -11.68 6.16 99.48 0.61 -11.07 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 7 C -0.34 -20.16 10.24 84.03 0.86 -19.30 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 9 N -0.62 -30.67 3.06 -691.96 -2.12 -32.78 16 10 C 0.08 3.43 5.80 86.73 0.50 3.93 16 11 C 0.11 3.45 4.09 31.78 0.13 3.58 16 12 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 13 O -0.57 -16.57 12.09 -148.98 -1.80 -18.37 16 14 C -0.10 -2.98 3.03 -9.40 -0.03 -3.00 16 15 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 16 C 0.15 4.47 4.74 86.38 0.41 4.88 16 17 N -0.71 -20.73 5.40 -465.49 -2.52 -23.24 16 18 C 0.60 18.58 7.85 86.93 0.68 19.26 16 19 O -0.55 -19.10 16.09 -3.72 -0.06 -19.16 16 20 C -0.04 -1.14 7.19 42.55 0.31 -0.84 16 21 N -0.36 -9.75 11.89 -48.94 -0.58 -10.33 16 22 O 0.13 2.91 11.18 78.72 0.88 3.79 16 23 C -0.02 -0.38 7.38 24.99 0.18 -0.19 16 24 C -0.17 -3.79 6.04 -20.05 -0.12 -3.91 16 25 C -0.05 -0.81 5.66 29.83 0.17 -0.64 16 26 C -0.12 -1.07 5.92 30.81 0.18 -0.89 16 27 C -0.12 -0.64 5.88 30.77 0.18 -0.46 16 28 C -0.04 -0.23 6.31 29.96 0.19 -0.04 16 29 C 0.13 5.61 6.40 86.86 0.56 6.16 16 30 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 31 H 0.03 1.41 3.76 -2.38 -0.01 1.40 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.40 8.11 9.12 -74.05 -0.68 7.43 16 34 H 0.07 2.24 7.43 -2.39 -0.02 2.22 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 11.61 8.11 -92.71 -0.75 10.85 16 37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.07 1.51 7.84 -2.39 -0.02 1.49 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.07 0.48 8.12 -2.38 -0.02 0.46 16 42 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.01 0.58 8.01 -2.38 -0.02 0.56 16 Total: -1.00 -79.76 370.53 0.02 -79.74 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.53 Total: 18.74 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.65 Total: 5.93 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -4.92 Total: -125.49 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.98 Total: -33.74 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.80 Total: 54.82 kcal Total: -79.76 0.02 -79.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958430771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.779 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds