Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99985 * 2 1 4 4 H 1.48506 * 109.46914 * 240.00011 * 3 2 1 5 5 H 1.48494 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47026 * 120.00061 * 3 2 1 7 7 C 1.38818 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.65054 * 179.97438 * 9 7 2 11 11 C 1.54319 * 107.27481 * 178.90851 * 10 9 7 12 12 H 1.09003 * 110.72155 * 96.35012 * 11 10 9 13 13 C 1.52994 * 110.72166 * 219.44459 * 11 10 9 14 14 N 1.46503 * 109.47259 * 293.54696 * 13 11 10 15 15 C 1.34774 * 120.00310 * 180.02562 * 14 13 11 16 16 O 1.21502 * 119.99905 * 359.97438 * 15 14 13 17 17 C 1.48325 * 120.00180 * 179.97438 * 15 14 13 18 18 N 1.31490 * 127.15608 * 0.02562 * 17 15 14 19 19 O 1.21433 * 111.53043 * 179.97438 * 18 17 15 20 20 C 1.33194 * 111.56551 * 359.95637 * 19 18 17 21 21 C 1.35375 * 106.63423 * 0.07739 * 20 19 18 22 22 C 1.50068 * 124.93664 * 179.80369 * 21 20 19 23 23 C 1.53549 * 108.22627 * 343.92655 * 22 21 20 24 24 C 1.53105 * 109.50807 * 49.20820 * 23 22 21 25 25 C 1.50601 * 129.60148 * 180.19147 * 20 19 18 26 26 C 1.55156 * 102.94011 * 337.81004 * 11 10 9 27 27 H 1.09000 * 111.00199 * 277.42615 * 26 11 10 28 28 O 1.42898 * 111.00390 * 153.57754 * 26 11 10 29 29 C 1.47425 * 125.64989 * 359.96607 * 9 7 2 30 30 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.88024 * 59.48731 * 10 9 7 32 32 H 1.09001 * 110.01016 * 298.39831 * 10 9 7 33 33 H 1.09003 * 109.47006 * 173.54446 * 13 11 10 34 34 H 1.09003 * 109.47412 * 53.54540 * 13 11 10 35 35 H 0.96998 * 119.99731 * 359.97438 * 14 13 11 36 36 H 1.08991 * 109.71204 * 103.61113 * 22 21 20 37 37 H 1.09003 * 109.70739 * 224.24209 * 22 21 20 38 38 H 1.09000 * 109.46508 * 169.22294 * 23 22 21 39 39 H 1.09003 * 109.46271 * 289.19900 * 23 22 21 40 40 H 1.09002 * 109.42302 * 50.21405 * 24 23 22 41 41 H 1.08988 * 109.42980 * 170.05645 * 24 23 22 42 42 H 1.08998 * 109.69636 * 282.94425 * 25 20 19 43 43 H 1.09000 * 109.69431 * 43.52871 * 25 20 19 44 44 H 0.96706 * 114.00062 * 179.97438 * 28 26 11 45 45 H 1.08999 * 110.36479 * 322.99613 * 29 9 7 46 46 H 1.09004 * 110.36884 * 85.20879 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.9318 -3.7275 -0.0016 11 6 0.7785 -4.7524 0.0269 12 1 0.5467 -5.1004 -0.9798 13 6 1.1243 -5.9313 0.9387 14 7 2.2394 -6.6853 0.3604 15 6 2.7178 -7.7739 0.9947 16 8 2.2246 -8.1298 2.0465 17 6 3.8464 -8.5375 0.4089 18 7 4.4819 -8.2802 -0.7131 19 8 5.3623 -9.0899 -0.9224 20 6 5.4286 -10.0023 0.0457 21 6 4.4611 -9.6899 0.9395 22 6 4.1708 -10.4584 2.1954 23 6 4.8486 -11.8318 2.0856 24 6 6.3066 -11.6494 1.6552 25 6 6.3607 -11.1754 0.1969 26 6 -0.4008 -3.9323 0.6134 27 1 -0.3498 -3.8982 1.7017 28 8 -1.6565 -4.4573 0.1778 29 6 -0.1415 -2.5332 0.0007 30 1 -0.4850 0.8401 -0.0004 31 1 2.5594 -3.8510 0.8810 32 1 2.5286 -3.8661 -0.9031 33 1 0.2560 -6.5832 1.0348 34 1 1.4094 -5.5584 1.9225 35 1 2.6330 -6.4013 -0.4795 36 1 4.5680 -9.9201 3.0559 37 1 3.0942 -10.5875 2.3067 38 1 4.8154 -12.3316 3.0536 39 1 4.3246 -12.4373 1.3461 40 1 6.7835 -10.9073 2.2955 41 1 6.8334 -12.5990 1.7476 42 1 6.0453 -11.9828 -0.4639 43 1 7.3773 -10.8716 -0.0529 44 1 -2.4233 -3.9772 0.5194 45 1 -0.5987 -1.7588 0.6165 46 1 -0.5284 -2.4851 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958430772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -7.354157 kcal Electronic energy + Delta-G solvation = -28786.301064 eV Core-core repulsion = 24679.528429 eV Total energy + Delta-G solvation = -4106.772634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.31478 -39.73347 -38.26836 -37.95437 -35.22228 -34.71450 -34.11910 -32.26368 -31.30765 -30.66625 -29.71099 -27.63282 -26.01506 -25.02543 -24.29114 -23.14816 -22.89735 -20.96226 -20.38604 -19.92530 -19.50800 -18.09261 -17.88769 -17.06457 -16.88179 -16.53531 -15.74466 -15.44626 -15.34237 -14.96899 -14.39564 -14.36330 -14.16813 -14.08980 -13.77962 -13.50512 -13.45755 -13.03938 -12.90384 -12.74036 -12.42286 -11.99065 -11.71295 -11.59257 -11.42802 -11.36357 -11.26483 -11.08510 -10.99558 -10.81265 -10.67679 -10.45213 -10.34563 -10.09916 -9.89774 -9.69668 -9.37365 -9.19744 -9.06688 -8.71905 -6.92841 -5.72688 -3.15257 0.92079 1.44083 2.59173 2.91853 3.08215 3.37372 3.41420 3.42771 3.78797 4.18328 4.30784 4.38906 4.40772 4.60629 4.66411 4.70370 4.81694 4.98633 5.00389 5.06965 5.18597 5.21478 5.32813 5.39640 5.42674 5.45994 5.51629 5.58559 5.64437 5.68364 5.85362 5.89104 5.95111 5.99250 6.02087 6.16785 6.30140 6.40803 6.56915 6.78548 7.33833 7.34748 7.52678 7.72540 7.79392 8.03698 8.14048 8.27252 9.13477 9.74102 10.37297 11.31366 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002366 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.736134 B =11832.023928 C =12764.702223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.140 3.860 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.133 3.867 14 N -0.707 5.707 15 C 0.597 3.403 16 O -0.524 6.524 17 C -0.015 4.015 18 N -0.334 5.334 19 O 0.128 5.872 20 C -0.040 4.040 21 C -0.152 4.152 22 C -0.045 4.045 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.035 4.035 26 C 0.082 3.918 27 H 0.062 0.938 28 O -0.569 6.569 29 C 0.128 3.872 30 H 0.254 0.746 31 H 0.029 0.971 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.377 0.623 45 H 0.110 0.890 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -24.500 2.571 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.125 4.125 12 H 0.105 0.895 13 C 0.010 3.990 14 N -0.358 5.358 15 C 0.380 3.620 16 O -0.398 6.398 17 C -0.173 4.173 18 N -0.036 5.036 19 O 0.055 5.945 20 C -0.105 4.105 21 C -0.157 4.157 22 C -0.083 4.083 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.073 4.073 26 C 0.022 3.978 27 H 0.080 0.920 28 O -0.374 6.374 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.224 0.776 45 H 0.127 0.873 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.147 -23.928 2.121 25.704 hybrid contribution 0.240 1.115 0.240 1.166 sum 9.386 -22.812 2.361 24.781 Atomic orbital electron populations 1.69749 1.04943 1.25067 1.57439 1.24808 0.95778 0.97848 1.02168 0.86107 0.78400 0.82763 0.77963 1.21119 1.21494 1.21077 1.19049 0.90540 0.82253 1.43453 0.90331 1.44303 1.01605 0.99785 1.87071 1.21365 0.93282 0.85517 0.98399 1.22413 0.96372 0.94056 0.99659 0.89460 1.21536 0.88046 0.92356 0.97038 1.45935 1.35797 1.27570 1.26483 1.16823 0.80920 0.80202 0.84024 1.90782 1.58968 1.68286 1.21807 1.23065 1.01054 0.98753 0.94418 1.74596 1.00898 1.11103 1.17036 1.84692 1.40611 1.28699 1.40504 1.24141 1.00801 0.95882 0.89654 1.20660 0.97369 0.97017 1.00676 1.20011 1.02367 0.93577 0.92316 1.21725 0.95242 0.96743 1.02415 1.21658 0.97585 1.02191 0.94254 1.20267 0.97102 0.91090 0.98792 1.23309 0.82072 0.95473 0.96972 0.92035 1.86370 1.15713 1.58969 1.76324 1.22552 0.85324 0.92494 0.99335 0.93554 0.95350 0.95678 0.90721 0.90821 0.75674 0.89784 0.89184 0.90543 0.91343 0.90945 0.90011 0.88690 0.88797 0.77583 0.87257 0.95938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.35 3.39 -170.06 -0.58 -15.92 16 10 C 0.14 2.93 6.52 -3.07 -0.02 2.91 16 11 C -0.11 -1.90 2.75 -88.79 -0.24 -2.14 16 12 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 13 C 0.13 2.12 4.99 -4.04 -0.02 2.10 16 14 N -0.71 -10.65 5.40 -61.09 -0.33 -10.98 16 15 C 0.60 9.31 7.85 -12.11 -0.10 9.21 16 16 O -0.52 -9.14 16.09 5.36 0.09 -9.06 16 17 C -0.01 -0.20 7.19 -82.83 -0.60 -0.80 16 18 N -0.33 -4.53 11.89 33.29 0.40 -4.13 16 19 O 0.13 1.47 11.18 19.18 0.21 1.68 16 20 C -0.04 -0.38 7.38 -35.38 -0.26 -0.64 16 21 C -0.15 -1.72 6.04 -104.91 -0.63 -2.36 16 22 C -0.05 -0.42 5.66 -27.90 -0.16 -0.58 16 23 C -0.12 -0.72 5.92 -26.39 -0.16 -0.87 16 24 C -0.12 -0.54 5.88 -26.45 -0.16 -0.69 16 25 C -0.03 -0.17 6.31 -27.71 -0.17 -0.35 16 26 C 0.08 1.57 3.88 -24.57 -0.10 1.48 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 O -0.57 -9.88 13.47 -35.23 -0.47 -10.35 16 29 C 0.13 3.09 5.62 -2.52 -0.01 3.07 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.03 0.59 7.77 -51.93 -0.40 0.19 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 35 H 0.41 5.84 8.10 -40.82 -0.33 5.50 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.94 7.84 -51.93 -0.41 0.53 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.08 0.21 8.14 -51.94 -0.42 -0.21 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 5.07 9.12 45.56 0.42 5.49 16 45 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -33.14 374.60 -8.44 -41.58 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.06 Total: 7.06 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.87 Total: 3.55 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.05 Total: -57.08 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.17 Total: -17.73 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.14 -8.44 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958430772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.226 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds