Wall clock time and date at job start Tue Mar 31 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99985 * 2 1 4 4 H 1.48506 * 109.46914 * 240.00011 * 3 2 1 5 5 H 1.48494 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47026 * 120.00061 * 3 2 1 7 7 C 1.38818 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.65054 * 179.97438 * 9 7 2 11 11 C 1.54319 * 107.27481 * 178.90851 * 10 9 7 12 12 H 1.09003 * 110.72155 * 96.35012 * 11 10 9 13 13 C 1.52994 * 110.72166 * 219.44459 * 11 10 9 14 14 N 1.46503 * 109.47259 * 293.54696 * 13 11 10 15 15 C 1.34774 * 120.00310 * 180.02562 * 14 13 11 16 16 O 1.21502 * 119.99905 * 359.97438 * 15 14 13 17 17 C 1.48325 * 120.00180 * 179.97438 * 15 14 13 18 18 N 1.31490 * 127.15608 * 0.02562 * 17 15 14 19 19 O 1.21433 * 111.53043 * 179.97438 * 18 17 15 20 20 C 1.33194 * 111.56551 * 359.95637 * 19 18 17 21 21 C 1.35375 * 106.63423 * 0.07739 * 20 19 18 22 22 C 1.50068 * 124.93664 * 179.80369 * 21 20 19 23 23 C 1.53549 * 108.22627 * 343.92655 * 22 21 20 24 24 C 1.53105 * 109.50807 * 49.20820 * 23 22 21 25 25 C 1.50601 * 129.60148 * 180.19147 * 20 19 18 26 26 C 1.55156 * 102.94011 * 337.81004 * 11 10 9 27 27 H 1.09000 * 111.00199 * 277.42615 * 26 11 10 28 28 O 1.42898 * 111.00390 * 153.57754 * 26 11 10 29 29 C 1.47425 * 125.64989 * 359.96607 * 9 7 2 30 30 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.88024 * 59.48731 * 10 9 7 32 32 H 1.09001 * 110.01016 * 298.39831 * 10 9 7 33 33 H 1.09003 * 109.47006 * 173.54446 * 13 11 10 34 34 H 1.09003 * 109.47412 * 53.54540 * 13 11 10 35 35 H 0.96998 * 119.99731 * 359.97438 * 14 13 11 36 36 H 1.08991 * 109.71204 * 103.61113 * 22 21 20 37 37 H 1.09003 * 109.70739 * 224.24209 * 22 21 20 38 38 H 1.09000 * 109.46508 * 169.22294 * 23 22 21 39 39 H 1.09003 * 109.46271 * 289.19900 * 23 22 21 40 40 H 1.09002 * 109.42302 * 50.21405 * 24 23 22 41 41 H 1.08988 * 109.42980 * 170.05645 * 24 23 22 42 42 H 1.08998 * 109.69636 * 282.94425 * 25 20 19 43 43 H 1.09000 * 109.69431 * 43.52871 * 25 20 19 44 44 H 0.96706 * 114.00062 * 179.97438 * 28 26 11 45 45 H 1.08999 * 110.36479 * 322.99613 * 29 9 7 46 46 H 1.09004 * 110.36884 * 85.20879 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.9318 -3.7275 -0.0016 11 6 0.7785 -4.7524 0.0269 12 1 0.5467 -5.1004 -0.9798 13 6 1.1243 -5.9313 0.9387 14 7 2.2394 -6.6853 0.3604 15 6 2.7178 -7.7739 0.9947 16 8 2.2246 -8.1298 2.0465 17 6 3.8464 -8.5375 0.4089 18 7 4.4819 -8.2802 -0.7131 19 8 5.3623 -9.0899 -0.9224 20 6 5.4286 -10.0023 0.0457 21 6 4.4611 -9.6899 0.9395 22 6 4.1708 -10.4584 2.1954 23 6 4.8486 -11.8318 2.0856 24 6 6.3066 -11.6494 1.6552 25 6 6.3607 -11.1754 0.1969 26 6 -0.4008 -3.9323 0.6134 27 1 -0.3498 -3.8982 1.7017 28 8 -1.6565 -4.4573 0.1778 29 6 -0.1415 -2.5332 0.0007 30 1 -0.4850 0.8401 -0.0004 31 1 2.5594 -3.8510 0.8810 32 1 2.5286 -3.8661 -0.9031 33 1 0.2560 -6.5832 1.0348 34 1 1.4094 -5.5584 1.9225 35 1 2.6330 -6.4013 -0.4795 36 1 4.5680 -9.9201 3.0559 37 1 3.0942 -10.5875 2.3067 38 1 4.8154 -12.3316 3.0536 39 1 4.3246 -12.4373 1.3461 40 1 6.7835 -10.9073 2.2955 41 1 6.8334 -12.5990 1.7476 42 1 6.0453 -11.9828 -0.4639 43 1 7.3773 -10.8716 -0.0529 44 1 -2.4233 -3.9772 0.5194 45 1 -0.5987 -1.7588 0.6165 46 1 -0.5284 -2.4851 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958430772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:20 Heat of formation + Delta-G solvation = -31.573755 kcal Electronic energy + Delta-G solvation = -28787.351304 eV Core-core repulsion = 24679.528429 eV Total energy + Delta-G solvation = -4107.822875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.23362 -41.02388 -39.81821 -38.58740 -36.71359 -36.27524 -35.05451 -34.06082 -32.00067 -31.68773 -31.07028 -29.38747 -27.59723 -26.30119 -25.29074 -24.30165 -23.72658 -22.43977 -21.72465 -21.32968 -20.48450 -19.09839 -18.95177 -18.78988 -18.28123 -17.70484 -17.16402 -16.89263 -16.56215 -16.03603 -15.75690 -15.67846 -15.14761 -14.86580 -14.81403 -14.78499 -14.44362 -14.28398 -14.20112 -14.05207 -13.74439 -13.33949 -13.25185 -13.15364 -12.76369 -12.54936 -12.44925 -12.41520 -11.97462 -11.95128 -11.90627 -11.85980 -11.72246 -11.48173 -11.33984 -11.28885 -10.87193 -10.77376 -10.35080 -10.13525 -8.97955 -7.83644 -5.29524 -0.05390 0.59215 1.44718 1.47762 1.54228 1.67800 1.92512 1.94279 2.44347 2.78035 3.14626 3.25934 3.43577 3.52460 3.63173 3.66724 3.83546 3.92311 4.00389 4.02324 4.07902 4.23404 4.35160 4.36570 4.39165 4.48261 4.51772 4.58719 4.62375 4.78762 4.87137 4.89266 4.93861 5.01673 5.07046 5.18230 5.19808 5.20779 5.34401 5.38136 5.43181 5.44820 5.69038 6.14133 6.20598 6.76653 6.85814 6.95482 7.03433 7.68730 8.31548 9.18073 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002366 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.736134 B =11832.023928 C =12764.702223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.140 3.860 11 C -0.090 4.090 12 H 0.090 0.910 13 C 0.146 3.854 14 N -0.704 5.704 15 C 0.597 3.403 16 O -0.547 6.547 17 C -0.041 4.041 18 N -0.355 5.355 19 O 0.133 5.867 20 C -0.021 4.021 21 C -0.172 4.172 22 C -0.046 4.046 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.035 4.035 26 C 0.100 3.900 27 H 0.072 0.928 28 O -0.568 6.568 29 C 0.133 3.867 30 H 0.250 0.750 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.395 0.605 45 H 0.082 0.918 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 -26.750 2.666 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.015 3.985 11 C -0.109 4.109 12 H 0.108 0.892 13 C 0.023 3.977 14 N -0.355 5.355 15 C 0.381 3.619 16 O -0.424 6.424 17 C -0.197 4.197 18 N -0.056 5.056 19 O 0.058 5.942 20 C -0.086 4.086 21 C -0.178 4.178 22 C -0.084 4.084 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.073 4.073 26 C 0.039 3.961 27 H 0.090 0.910 28 O -0.375 6.375 29 C 0.008 3.992 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.245 0.755 45 H 0.100 0.900 46 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 11.051 -26.191 2.211 28.512 hybrid contribution -0.332 1.761 0.179 1.800 sum 10.719 -24.430 2.389 26.785 Atomic orbital electron populations 1.69989 1.06174 1.25367 1.58168 1.25661 0.96723 1.01059 1.02276 0.85088 0.77145 0.78497 0.78204 1.20496 1.21708 1.20177 1.19418 0.91059 0.83539 1.43276 0.90041 1.44585 1.02431 1.00894 1.87063 1.21475 0.94277 0.84288 0.98497 1.22235 0.94681 0.93764 1.00218 0.89208 1.21307 0.88602 0.91605 0.96163 1.45871 1.35567 1.27505 1.26587 1.17050 0.81105 0.80029 0.83678 1.90758 1.59906 1.68932 1.22821 1.23012 1.01358 0.99969 0.95374 1.74577 1.01677 1.12181 1.17213 1.84657 1.39780 1.28759 1.40968 1.24965 1.00222 0.95606 0.87786 1.20984 0.98036 0.96747 1.01997 1.20060 1.01577 0.95471 0.91249 1.21733 0.95964 0.94406 1.03543 1.21702 0.96606 1.03533 0.93528 1.20633 0.97151 0.89702 0.99764 1.22966 0.83340 0.92685 0.97109 0.90978 1.86345 1.15746 1.58889 1.76551 1.22347 0.84663 0.94872 0.97358 0.94075 0.95069 0.95290 0.90151 0.91222 0.75216 0.90475 0.91150 0.89129 0.90880 0.91475 0.87009 0.86334 0.86585 0.75479 0.89984 0.98974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.97 10.09 21.65 0.22 -55.75 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.79 10.27 84.04 0.86 -12.92 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -32.38 3.39 -691.96 -2.35 -34.72 16 10 C 0.14 5.84 6.52 86.73 0.57 6.40 16 11 C -0.09 -3.18 2.75 -9.61 -0.03 -3.20 16 12 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 13 C 0.15 4.58 4.99 86.38 0.43 5.01 16 14 N -0.70 -21.14 5.40 -465.50 -2.51 -23.66 16 15 C 0.60 18.81 7.85 86.93 0.68 19.49 16 16 O -0.55 -19.42 16.09 -3.72 -0.06 -19.48 16 17 C -0.04 -1.13 7.19 42.55 0.31 -0.83 16 18 N -0.35 -9.51 11.89 -48.95 -0.58 -10.10 16 19 O 0.13 2.87 11.18 78.65 0.88 3.75 16 20 C -0.02 -0.36 7.38 24.99 0.18 -0.17 16 21 C -0.17 -3.78 6.04 -20.05 -0.12 -3.90 16 22 C -0.05 -0.83 5.66 29.83 0.17 -0.66 16 23 C -0.12 -1.10 5.92 30.81 0.18 -0.91 16 24 C -0.12 -0.63 5.88 30.77 0.18 -0.44 16 25 C -0.03 -0.22 6.31 29.96 0.19 -0.03 16 26 C 0.10 3.79 3.88 31.99 0.12 3.91 16 27 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 28 O -0.57 -19.12 13.47 -148.98 -2.01 -21.13 16 29 C 0.13 6.57 5.62 86.86 0.49 7.06 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.03 1.29 7.77 -2.39 -0.02 1.28 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.27 8.06 -2.39 -0.02 2.25 16 35 H 0.41 11.75 8.10 -92.71 -0.75 11.00 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.51 7.84 -2.39 -0.02 1.49 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.62 8.12 -2.39 -0.02 0.61 16 40 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 41 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.12 0.32 8.14 -2.39 -0.02 0.31 16 44 H 0.40 10.18 9.12 -74.05 -0.68 9.51 16 45 H 0.08 4.51 5.87 -2.39 -0.01 4.49 16 46 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 Total: -1.00 -73.47 374.60 -0.10 -73.57 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.40 Total: 24.26 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 4.68 Total: 15.61 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.22 Total: -124.22 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.19 Total: -36.86 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.47 -0.10 -73.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958430772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.998 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds