Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47377 * 270.00338 * 3 2 1 5 5 H 1.48506 * 109.47140 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47421 * 150.00155 * 3 2 1 7 7 C 1.38824 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21282 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00148 * 180.02562 * 17 16 15 20 20 C 1.53247 * 109.61724 * 299.07514 * 19 17 16 21 21 C 1.50586 * 109.15258 * 184.64818 * 20 19 17 22 22 O 1.21228 * 119.36228 * 209.11508 * 21 20 19 23 23 N 1.34144 * 121.28054 * 29.11017 * 21 20 19 24 24 C 1.34140 * 122.58700 * 359.45491 * 23 21 20 25 25 O 1.21226 * 119.35972 * 180.54221 * 24 23 21 26 26 C 1.50587 * 121.27983 * 0.52838 * 24 23 21 27 27 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 28 28 H 0.96993 * 120.00000 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 30 30 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 31 31 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 32 32 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 33 33 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 34 34 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 35 35 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 36 36 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 37 37 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 38 38 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 39 39 H 1.08991 * 109.62049 * 59.62916 * 19 17 16 40 40 H 1.08998 * 109.52568 * 304.56891 * 20 19 17 41 41 H 1.09002 * 109.52084 * 64.75713 * 20 19 17 42 42 H 0.96998 * 118.70336 * 179.48324 * 23 21 20 43 43 H 1.09003 * 109.52474 * 211.01853 * 26 24 23 44 44 H 1.08994 * 109.52711 * 90.82999 * 26 24 23 45 45 H 1.08999 * 113.66373 * 265.09616 * 27 12 11 46 46 H 1.09000 * 113.66011 * 36.14689 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.2580 -4.8292 -0.5979 12 6 1.8336 -5.6839 0.5319 13 6 2.0040 -4.4004 1.3453 14 6 3.0118 -6.6275 0.2879 15 6 2.4306 -7.5039 1.4123 16 7 2.9353 -7.1598 2.7439 17 6 3.8103 -7.9757 3.3645 18 8 4.1802 -8.9945 2.8204 19 6 4.3290 -7.6220 4.7345 20 6 5.0788 -6.2869 4.6719 21 6 5.6895 -5.9997 6.0181 22 8 5.8505 -4.8491 6.3644 23 7 6.0586 -6.9922 6.8415 24 6 5.9003 -8.2870 6.5288 25 8 6.2459 -9.1365 7.3216 26 6 5.3015 -8.7058 5.2122 27 6 1.0608 -6.8784 1.0923 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0002 30 1 3.0650 -3.5645 -0.4086 31 1 1.5959 -5.1300 -1.5896 32 1 0.1776 -4.6978 -0.5401 33 1 1.1333 -4.1470 1.9502 34 1 2.9378 -4.3584 1.9060 35 1 2.9946 -7.1047 -0.6918 36 1 3.9802 -6.1901 0.5306 37 1 2.4816 -8.5724 1.2029 38 1 2.6397 -6.3448 3.1788 39 1 3.4956 -7.5445 5.4326 40 1 5.8655 -6.3459 3.9198 41 1 4.3826 -5.4901 4.4103 42 1 6.4553 -6.7646 7.6970 43 1 4.7651 -9.6462 5.3386 44 1 6.0945 -8.8339 4.4755 45 1 0.4706 -6.6412 1.9775 46 1 0.4951 -7.4260 0.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965451368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = -58.141621 kcal Electronic energy + Delta-G solvation = -28869.801221 eV Core-core repulsion = 24760.826277 eV Total energy + Delta-G solvation = -4108.974944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05473 -40.81449 -39.42000 -39.27111 -36.11031 -35.78675 -34.35875 -33.56764 -32.22143 -29.66783 -29.31736 -26.02691 -25.86935 -25.24906 -24.19549 -23.66252 -22.40592 -20.92681 -19.96631 -19.87136 -18.28151 -18.00989 -17.89029 -17.47286 -17.09199 -16.41412 -16.13957 -15.72340 -15.27663 -15.18405 -14.90015 -14.80788 -14.59087 -14.44807 -14.03151 -13.92921 -13.58462 -13.09497 -12.95188 -12.68945 -12.46037 -12.16044 -12.00287 -11.90216 -11.73115 -11.37170 -11.30146 -11.07324 -10.91528 -10.82312 -10.72469 -10.69448 -10.25435 -10.18446 -10.05223 -9.87635 -9.79120 -9.45572 -9.21152 -8.89999 -7.00199 -5.82131 -3.10853 1.00890 2.11283 2.24019 2.29153 2.73700 3.40522 3.41453 3.46326 3.47554 3.77739 3.93508 4.04595 4.37247 4.46637 4.51897 4.58605 4.61745 4.69907 4.78866 4.81259 4.98170 5.15783 5.26686 5.28965 5.41431 5.51681 5.55196 5.68959 5.73975 5.75902 5.84664 5.89118 5.96919 6.10869 6.16583 6.27367 6.32009 6.32342 6.38766 6.52128 6.85489 6.86536 7.05736 7.16491 7.32542 7.66058 7.81554 8.36705 9.47931 10.06006 10.39950 11.40252 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002764 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.184696 B =10127.616125 C =12119.272791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.170 3.830 11 C -0.139 4.139 12 C -0.106 4.106 13 C -0.144 4.144 14 C -0.125 4.125 15 C 0.120 3.880 16 N -0.702 5.702 17 C 0.526 3.474 18 O -0.532 6.532 19 C -0.114 4.114 20 C -0.138 4.138 21 C 0.528 3.472 22 O -0.491 6.491 23 N -0.677 5.677 24 C 0.528 3.472 25 O -0.500 6.500 26 C -0.122 4.122 27 C -0.132 4.132 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.405 0.595 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.414 0.586 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -19.364 8.656 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.058 3.942 11 C -0.178 4.178 12 C -0.107 4.107 13 C -0.185 4.185 14 C -0.163 4.163 15 C 0.015 3.985 16 N -0.353 5.353 17 C 0.310 3.690 18 O -0.409 6.409 19 C -0.136 4.136 20 C -0.178 4.178 21 C 0.316 3.684 22 O -0.362 6.362 23 N -0.343 5.343 24 C 0.317 3.683 25 O -0.372 6.372 26 C -0.162 4.162 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.241 0.759 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.253 0.747 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.848 -19.796 8.638 22.980 hybrid contribution 0.089 1.532 0.594 1.645 sum 7.937 -18.264 9.231 21.950 Atomic orbital electron populations 1.69652 1.05147 1.25764 1.57506 1.24760 0.95509 0.97781 1.02812 0.86208 0.78729 0.83826 0.77544 1.21697 1.21759 1.20683 1.19297 0.91047 0.84245 1.42903 0.91137 1.42421 1.05729 0.99915 1.87008 1.21495 0.95291 0.84899 0.92524 1.23286 1.00580 0.97295 0.96680 1.22380 0.96238 0.92606 0.99436 1.23628 1.00864 0.94003 1.00037 1.23116 0.98046 0.96703 0.98469 1.21922 0.95251 0.99598 0.81710 1.45712 1.45284 1.25698 1.18582 1.20017 0.79008 0.83602 0.86328 1.90745 1.57966 1.25545 1.66623 1.21529 0.99924 0.95040 0.97125 1.21998 1.02713 0.98354 0.94708 1.20743 0.76584 0.84557 0.86471 1.90859 1.50650 1.20124 1.74566 1.44909 1.58811 1.07916 1.22625 1.20928 0.76846 0.81335 0.89229 1.90813 1.46666 1.49706 1.50001 1.21781 1.00595 1.00383 0.93473 1.23158 0.95222 0.97365 1.01292 0.93453 0.78121 0.90871 0.92238 0.90259 0.90146 0.92803 0.89135 0.91030 0.88148 0.75904 0.86617 0.86039 0.85719 0.74657 0.85859 0.85892 0.90990 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.54 9.97 -15.05 -0.15 -6.69 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.01 5.40 -52.47 -0.28 -17.29 16 10 C 0.17 3.08 4.48 -66.95 -0.30 2.78 16 11 C -0.14 -2.06 7.59 -26.28 -0.20 -2.26 16 12 C -0.11 -1.24 1.02 -154.71 -0.16 -1.40 16 13 C -0.14 -2.08 6.97 -26.28 -0.18 -2.27 16 14 C -0.12 -1.27 7.64 -26.28 -0.20 -1.47 16 15 C 0.12 1.10 4.31 -66.95 -0.29 0.81 16 16 N -0.70 -5.45 5.17 -52.85 -0.27 -5.72 16 17 C 0.53 4.14 7.16 -10.98 -0.08 4.06 16 18 O -0.53 -5.99 15.55 5.56 0.09 -5.90 16 19 C -0.11 -0.58 2.66 -91.52 -0.24 -0.83 16 20 C -0.14 -0.73 5.24 -27.81 -0.15 -0.88 16 21 C 0.53 3.98 7.74 -11.32 -0.09 3.89 16 22 O -0.49 -5.71 17.88 5.60 0.10 -5.61 16 23 N -0.68 -4.46 5.09 -11.75 -0.06 -4.52 16 24 C 0.53 3.81 7.74 -11.32 -0.09 3.72 16 25 O -0.50 -5.38 17.88 5.60 0.10 -5.28 16 26 C -0.12 -0.69 4.70 -27.81 -0.13 -0.82 16 27 C -0.13 -1.26 7.59 -26.29 -0.20 -1.46 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.38 9.80 7.92 -40.82 -0.32 9.48 16 30 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.24 8.12 -51.93 -0.42 0.81 16 33 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 34 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.98 7.47 -51.92 -0.39 0.60 16 38 H 0.41 2.72 7.60 -40.82 -0.31 2.41 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 0.63 7.77 -51.93 -0.40 0.22 16 42 H 0.41 2.53 8.79 -40.82 -0.36 2.17 16 43 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.12 0.66 7.98 -51.93 -0.41 0.24 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -34.38 382.47 -8.23 -42.61 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.81 Total: 9.11 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.55 Total: -3.26 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.11 Total: -54.35 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.29 Total: -16.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.38 -8.23 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965451368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.535 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds