Wall clock time and date at job start Tue Mar 31 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47377 * 270.00338 * 3 2 1 5 5 H 1.48506 * 109.47140 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47421 * 150.00155 * 3 2 1 7 7 C 1.38824 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21282 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00148 * 180.02562 * 17 16 15 20 20 C 1.53247 * 109.61724 * 299.07514 * 19 17 16 21 21 C 1.50586 * 109.15258 * 184.64818 * 20 19 17 22 22 O 1.21228 * 119.36228 * 209.11508 * 21 20 19 23 23 N 1.34144 * 121.28054 * 29.11017 * 21 20 19 24 24 C 1.34140 * 122.58700 * 359.45491 * 23 21 20 25 25 O 1.21226 * 119.35972 * 180.54221 * 24 23 21 26 26 C 1.50587 * 121.27983 * 0.52838 * 24 23 21 27 27 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 28 28 H 0.96993 * 120.00000 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 30 30 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 31 31 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 32 32 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 33 33 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 34 34 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 35 35 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 36 36 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 37 37 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 38 38 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 39 39 H 1.08991 * 109.62049 * 59.62916 * 19 17 16 40 40 H 1.08998 * 109.52568 * 304.56891 * 20 19 17 41 41 H 1.09002 * 109.52084 * 64.75713 * 20 19 17 42 42 H 0.96998 * 118.70336 * 179.48324 * 23 21 20 43 43 H 1.09003 * 109.52474 * 211.01853 * 26 24 23 44 44 H 1.08994 * 109.52711 * 90.82999 * 26 24 23 45 45 H 1.08999 * 113.66373 * 265.09616 * 27 12 11 46 46 H 1.09000 * 113.66011 * 36.14689 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.2580 -4.8292 -0.5979 12 6 1.8336 -5.6839 0.5319 13 6 2.0040 -4.4004 1.3453 14 6 3.0118 -6.6275 0.2879 15 6 2.4306 -7.5039 1.4123 16 7 2.9353 -7.1598 2.7439 17 6 3.8103 -7.9757 3.3645 18 8 4.1802 -8.9945 2.8204 19 6 4.3290 -7.6220 4.7345 20 6 5.0788 -6.2869 4.6719 21 6 5.6895 -5.9997 6.0181 22 8 5.8505 -4.8491 6.3644 23 7 6.0586 -6.9922 6.8415 24 6 5.9003 -8.2870 6.5288 25 8 6.2459 -9.1365 7.3216 26 6 5.3015 -8.7058 5.2122 27 6 1.0608 -6.8784 1.0923 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0002 30 1 3.0650 -3.5645 -0.4086 31 1 1.5959 -5.1300 -1.5896 32 1 0.1776 -4.6978 -0.5401 33 1 1.1333 -4.1470 1.9502 34 1 2.9378 -4.3584 1.9060 35 1 2.9946 -7.1047 -0.6918 36 1 3.9802 -6.1901 0.5306 37 1 2.4816 -8.5724 1.2029 38 1 2.6397 -6.3448 3.1788 39 1 3.4956 -7.5445 5.4326 40 1 5.8655 -6.3459 3.9198 41 1 4.3826 -5.4901 4.4103 42 1 6.4553 -6.7646 7.6970 43 1 4.7651 -9.6462 5.3386 44 1 6.0945 -8.8339 4.4755 45 1 0.4706 -6.6412 1.9775 46 1 0.4951 -7.4260 0.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965451368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:15 Heat of formation + Delta-G solvation = -83.942013 kcal Electronic energy + Delta-G solvation = -28870.920010 eV Core-core repulsion = 24760.826277 eV Total energy + Delta-G solvation = -4110.093733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67291 -41.69561 -40.24503 -39.98269 -37.23307 -36.54680 -35.15173 -34.87694 -33.37693 -31.40143 -29.87215 -26.76815 -26.67284 -26.46787 -25.88279 -24.27804 -23.52214 -21.69299 -21.11653 -20.36426 -19.37504 -18.90640 -18.69065 -18.50502 -18.10073 -17.10883 -16.86816 -16.79995 -16.34003 -16.01424 -15.79631 -15.76628 -15.51817 -15.29544 -15.21213 -15.00110 -14.57377 -14.27718 -13.84259 -13.58892 -13.48288 -13.28352 -12.97862 -12.89083 -12.79017 -12.49374 -12.38869 -12.31306 -12.16087 -12.05648 -11.97553 -11.78527 -11.42035 -11.39827 -11.14489 -10.98329 -10.84320 -10.75503 -10.60015 -9.96653 -8.93117 -7.92635 -5.19553 0.38387 1.48906 1.49292 1.50670 1.57732 1.66158 1.70071 2.12748 2.58261 2.87261 3.28895 3.39378 3.41873 3.54475 3.61746 3.64540 3.76655 3.93120 3.96971 4.04408 4.07516 4.35551 4.37584 4.41200 4.54175 4.68231 4.71386 4.74091 4.86199 4.93423 4.96229 4.97079 5.02467 5.06231 5.09217 5.18045 5.21820 5.29778 5.48226 5.58919 5.70469 5.73538 5.82034 6.27377 6.30646 6.54510 6.72726 7.20522 7.36447 8.16069 8.37241 9.30812 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002764 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.184696 B =10127.616125 C =12119.272791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.130 4.130 14 C -0.122 4.122 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.101 4.101 20 C -0.133 4.133 21 C 0.539 3.461 22 O -0.534 6.534 23 N -0.671 5.671 24 C 0.540 3.460 25 O -0.535 6.535 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.250 0.750 29 H 0.373 0.627 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.412 0.588 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.415 0.585 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -20.805 8.844 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.366 5.366 10 C 0.035 3.965 11 C -0.173 4.173 12 C -0.093 4.093 13 C -0.171 4.171 14 C -0.160 4.160 15 C 0.023 3.977 16 N -0.349 5.349 17 C 0.318 3.682 18 O -0.442 6.442 19 C -0.123 4.123 20 C -0.173 4.173 21 C 0.329 3.671 22 O -0.408 6.408 23 N -0.336 5.336 24 C 0.330 3.670 25 O -0.410 6.410 26 C -0.157 4.157 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.205 0.795 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.249 0.751 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.255 0.745 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.096 0.904 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.631 -21.284 8.830 24.606 hybrid contribution -0.097 1.893 0.499 1.960 sum 8.534 -19.390 9.330 23.149 Atomic orbital electron populations 1.69800 1.06545 1.25900 1.59916 1.25506 0.96307 1.00934 1.04160 0.85226 0.77834 0.79952 0.77309 1.21663 1.22447 1.19404 1.19682 0.91435 0.85480 1.40399 0.90682 1.42620 1.05331 1.01123 1.87576 1.21934 0.95081 0.83786 0.95728 1.23175 0.99614 0.96318 0.98159 1.22219 0.97801 0.92350 0.96880 1.23338 1.01143 0.94513 0.98080 1.23162 0.97092 0.96173 0.99595 1.21780 0.94603 0.99358 0.81960 1.45697 1.45137 1.25943 1.18158 1.20277 0.78335 0.82872 0.86721 1.90746 1.59054 1.26927 1.67521 1.21454 1.00393 0.94453 0.95985 1.22030 1.03200 0.98604 0.93448 1.21051 0.75470 0.83769 0.86814 1.90853 1.52640 1.21788 1.75512 1.44887 1.58227 1.07781 1.22685 1.21135 0.75802 0.80842 0.89203 1.90809 1.48374 1.50571 1.51248 1.21764 1.00859 1.00606 0.92429 1.23146 0.95531 0.95754 1.01678 0.94149 0.79544 0.91470 0.91573 0.91254 0.91285 0.91336 0.88137 0.91261 0.88149 0.75097 0.84415 0.84775 0.84881 0.74517 0.85587 0.85236 0.90433 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.66 0.28 -58.25 16 2 C -0.08 -4.34 5.50 84.87 0.47 -3.88 16 3 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.24 -12.82 9.97 84.04 0.84 -11.98 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.73 -35.09 5.40 -319.92 -1.73 -36.82 16 10 C 0.14 5.13 4.48 45.63 0.20 5.33 16 11 C -0.13 -3.80 7.59 30.89 0.23 -3.56 16 12 C -0.09 -1.93 1.02 -52.31 -0.05 -1.99 16 13 C -0.13 -3.54 6.97 30.88 0.22 -3.32 16 14 C -0.12 -2.12 7.64 30.88 0.24 -1.88 16 15 C 0.13 1.93 4.31 45.63 0.20 2.13 16 16 N -0.70 -8.56 5.17 -439.51 -2.27 -10.83 16 17 C 0.53 6.75 7.16 87.66 0.63 7.38 16 18 O -0.56 -11.19 15.55 -3.04 -0.05 -11.23 16 19 C -0.10 -0.73 2.66 -11.38 -0.03 -0.76 16 20 C -0.13 -1.06 5.24 29.89 0.16 -0.90 16 21 C 0.54 7.22 7.74 87.72 0.68 7.90 16 22 O -0.53 -11.95 17.88 -2.87 -0.05 -12.00 16 23 N -0.67 -7.98 5.09 -428.63 -2.18 -10.16 16 24 C 0.54 6.96 7.74 87.72 0.68 7.64 16 25 O -0.54 -11.06 17.88 -2.86 -0.05 -11.11 16 26 C -0.12 -1.04 4.70 29.89 0.14 -0.90 16 27 C -0.12 -1.96 7.59 30.88 0.23 -1.73 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.37 19.44 7.92 -92.71 -0.73 18.70 16 30 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.63 7.47 -2.38 -0.02 1.62 16 38 H 0.41 4.10 7.60 -92.71 -0.70 3.39 16 39 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.13 0.92 7.77 -2.39 -0.02 0.91 16 42 H 0.42 4.79 8.79 -92.71 -0.81 3.97 16 43 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.13 1.07 7.98 -2.39 -0.02 1.05 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.21 382.47 -0.41 -75.62 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -1.21 Total: 27.78 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 4.82 Total: -0.51 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -5.90 Total: -116.06 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.15 Total: -34.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.21 -0.41 -75.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965451368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.322 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds