Wall clock time and date at job start Tue Mar 31 2020 19:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47145 * 300.00751 * 3 2 1 6 6 H 1.48508 * 109.46891 * 60.00286 * 3 2 1 7 7 C 1.38814 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99760 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.58012 * 204.99847 * 10 9 7 12 12 C 1.52903 * 86.78668 * 220.66548 * 11 10 9 13 13 C 1.52916 * 88.04055 * 24.89715 * 12 11 10 14 14 C 1.52910 * 121.13896 * 150.61630 * 12 11 10 15 15 C 1.53950 * 86.78271 * 100.82611 * 14 12 11 16 16 N 1.46493 * 113.58091 * 139.33435 * 15 14 12 17 17 C 1.34784 * 119.99864 * 154.99763 * 16 15 14 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 15 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 15 20 20 N 1.46497 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.33882 * 122.76486 * 269.71233 * 20 19 17 22 22 O 1.21233 * 125.39053 * 359.97438 * 21 20 19 23 23 C 1.51307 * 109.21165 * 179.84313 * 21 20 19 24 24 C 1.54229 * 103.55194 * 0.38355 * 23 21 20 25 25 C 1.33879 * 122.76437 * 89.99694 * 20 19 17 26 26 O 1.21225 * 125.39319 * 0.02562 * 25 20 19 27 27 C 1.52907 * 121.13856 * 259.18618 * 12 11 10 28 28 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00100 * 0.02562 * 9 7 2 30 30 H 1.08998 * 112.88035 * 336.14366 * 10 9 7 31 31 H 1.09000 * 113.66440 * 106.19363 * 11 10 9 32 32 H 1.09000 * 113.74443 * 335.14944 * 11 10 9 33 33 H 1.08997 * 113.65906 * 89.57962 * 13 12 11 34 34 H 1.08997 * 113.66505 * 220.62641 * 13 12 11 35 35 H 1.08996 * 113.65929 * 346.34822 * 14 12 11 36 36 H 1.09008 * 113.74652 * 215.30484 * 14 12 11 37 37 H 1.09000 * 113.57520 * 270.05624 * 15 14 12 38 38 H 0.97000 * 120.00740 * 334.72455 * 16 15 14 39 39 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 40 40 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 41 41 H 1.09004 * 110.79523 * 241.78065 * 23 21 20 42 42 H 1.08994 * 110.42033 * 118.80791 * 23 21 20 43 43 H 1.09007 * 110.60745 * 241.26269 * 24 23 21 44 44 H 1.09005 * 110.73889 * 118.36402 * 24 23 21 45 45 H 1.08996 * 113.66598 * 144.70545 * 27 12 11 46 46 H 1.08997 * 113.66290 * 13.63858 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.2586 -4.8295 -0.5968 12 6 1.8333 -5.6836 0.5338 13 6 2.0031 -4.3996 1.3467 14 6 1.0599 -6.8778 1.0941 15 6 1.9761 -7.7651 0.2319 16 7 2.4114 -8.9895 0.9081 17 6 2.7662 -10.0695 0.1839 18 8 2.7203 -10.0292 -1.0273 19 6 3.2199 -11.3271 0.8794 20 7 3.5472 -12.3469 -0.1201 21 6 2.6470 -13.2233 -0.5828 22 8 1.4847 -13.2813 -0.2429 23 6 3.3092 -14.1275 -1.5992 24 6 4.7661 -13.6229 -1.6370 25 6 4.7725 -12.4828 -0.6421 26 8 5.7348 -11.8009 -0.3617 27 6 3.0117 -6.6273 0.2912 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 3.0654 -3.5646 -0.4067 31 1 1.5973 -5.1307 -1.5881 32 1 0.1781 -4.6980 -0.5398 33 1 1.1320 -4.1461 1.9509 34 1 2.9364 -4.3574 1.9081 35 1 0.0137 -6.9031 0.7897 36 1 1.1932 -7.0231 2.1662 37 1 1.5870 -7.9503 -0.7693 38 1 2.4482 -9.0218 1.8769 39 1 4.1032 -11.1114 1.4805 40 1 2.4216 -11.6935 1.5249 41 1 2.8402 -14.0192 -2.5772 42 1 3.2711 -15.1650 -1.2671 43 1 5.0219 -13.2635 -2.6338 44 1 5.4548 -14.4081 -1.3252 45 1 3.6945 -6.7011 1.1376 46 1 3.5244 -6.4528 -0.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965903415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:49 Heat of formation + Delta-G solvation = -39.966659 kcal Electronic energy + Delta-G solvation = -28168.481742 eV Core-core repulsion = 24060.294923 eV Total energy + Delta-G solvation = -4108.186818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40118 -40.56537 -39.18345 -39.00041 -36.29329 -35.90245 -34.01090 -33.67037 -32.23448 -29.64641 -28.40874 -26.67545 -25.79517 -25.24301 -24.18097 -22.87367 -22.81553 -21.11753 -20.25217 -19.77713 -18.25146 -17.84050 -17.72372 -16.98548 -16.94757 -16.79215 -16.19385 -15.50066 -15.17592 -15.06237 -14.76322 -14.64965 -14.49380 -14.37973 -14.11398 -13.83019 -13.46708 -13.28118 -13.00208 -12.72863 -12.54818 -12.39666 -12.11743 -11.90522 -11.67388 -11.34498 -11.16849 -11.00209 -10.91437 -10.87689 -10.70491 -10.51734 -10.35128 -10.04932 -9.88607 -9.79428 -9.72162 -9.36776 -9.15959 -8.85300 -6.93820 -5.77022 -3.05338 1.07294 1.82503 2.23599 2.25073 2.97440 3.43356 3.49194 3.51384 3.56242 3.69857 3.90156 4.25571 4.36206 4.48278 4.55470 4.57535 4.64930 4.69037 4.76167 4.86418 4.88241 4.91336 5.06340 5.09727 5.39601 5.43855 5.53630 5.70194 5.77998 5.90989 5.93107 5.97941 6.05575 6.19176 6.22574 6.28096 6.37274 6.42834 6.45754 6.64637 6.83372 6.93067 7.13305 7.17696 7.30105 7.71648 7.87377 8.41885 9.52917 10.11735 10.46129 11.45540 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.001809 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.234322 B =15474.339038 C =15827.476433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.168 3.832 11 C -0.129 4.129 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.129 4.129 15 C 0.123 3.877 16 N -0.712 5.712 17 C 0.502 3.498 18 O -0.532 6.532 19 C 0.077 3.923 20 N -0.559 5.559 21 C 0.531 3.469 22 O -0.480 6.480 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.531 3.469 26 O -0.478 6.478 27 C -0.124 4.124 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.402 0.598 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -32.905 1.608 33.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.057 3.943 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.363 5.363 17 C 0.286 3.714 18 O -0.408 6.408 19 C -0.048 4.048 20 N -0.302 5.302 21 C 0.321 3.679 22 O -0.351 6.351 23 C -0.193 4.193 24 C -0.194 4.194 25 C 0.320 3.680 26 O -0.349 6.349 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.236 0.764 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.102 0.898 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.654 -32.344 1.050 33.254 hybrid contribution 0.076 1.040 0.639 1.223 sum 7.730 -31.304 1.689 32.289 Atomic orbital electron populations 1.69674 1.05119 1.25560 1.57772 1.24769 0.95537 0.97774 1.02999 0.86117 0.78810 0.84112 0.77163 1.20537 1.21877 1.21885 1.19362 0.91117 0.84258 1.42499 0.91056 1.42426 1.05743 0.99927 1.87046 1.21536 0.95223 0.84815 0.92776 1.23216 1.00656 0.96721 0.96203 1.22074 0.96227 0.92376 0.99630 1.23638 1.01092 0.94453 0.99736 1.23178 0.99065 0.95132 0.99364 1.22693 0.96417 0.81001 0.98007 1.45970 1.67317 1.12922 1.10127 1.20700 0.77492 0.84880 0.88295 1.90728 1.52872 1.83395 1.13779 1.21593 1.04881 0.87171 0.91185 1.46320 1.13122 1.31001 1.39790 1.20856 0.85290 0.80455 0.81342 1.90797 1.15047 1.69975 1.59242 1.22452 0.94902 1.01038 1.00942 1.22457 0.98057 0.97555 1.01309 1.20855 0.81305 0.84859 0.80970 1.90801 1.35891 1.47414 1.60775 1.23141 0.96372 0.94261 1.02453 0.93556 0.78120 0.90794 0.92102 0.89998 0.90265 0.92700 0.90775 0.89770 0.86837 0.76392 0.85778 0.85787 0.85830 0.86027 0.85867 0.85986 0.89764 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -18.05 5.40 -52.48 -0.28 -18.33 16 10 C 0.17 3.37 4.48 -66.95 -0.30 3.07 16 11 C -0.13 -2.15 7.59 -26.29 -0.20 -2.35 16 12 C -0.10 -1.43 1.11 -154.71 -0.17 -1.60 16 13 C -0.15 -2.52 7.64 -26.28 -0.20 -2.72 16 14 C -0.13 -1.49 7.59 -26.28 -0.20 -1.69 16 15 C 0.12 1.44 4.24 -66.95 -0.28 1.15 16 16 N -0.71 -6.76 5.35 -52.85 -0.28 -7.04 16 17 C 0.50 5.62 7.90 -10.98 -0.09 5.53 16 18 O -0.53 -8.19 16.03 5.56 0.09 -8.10 16 19 C 0.08 0.59 6.04 -5.20 -0.03 0.56 16 20 N -0.56 -4.65 2.04 -116.63 -0.24 -4.89 16 21 C 0.53 4.27 8.08 -11.09 -0.09 4.18 16 22 O -0.48 -5.49 17.47 5.60 0.10 -5.39 16 23 C -0.15 -0.50 7.03 -26.94 -0.19 -0.69 16 24 C -0.15 -0.51 7.03 -26.94 -0.19 -0.70 16 25 C 0.53 4.33 8.08 -11.09 -0.09 4.24 16 26 O -0.48 -5.59 17.48 5.60 0.10 -5.49 16 27 C -0.12 -1.56 7.64 -26.28 -0.20 -1.76 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.38 10.30 7.92 -40.82 -0.32 9.98 16 30 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.41 8.12 -51.93 -0.42 0.98 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.84 8.12 -51.92 -0.42 0.41 16 37 H 0.11 1.56 7.46 -51.93 -0.39 1.18 16 38 H 0.40 2.50 8.73 -40.82 -0.36 2.15 16 39 H 0.12 0.73 7.83 -51.93 -0.41 0.32 16 40 H 0.12 0.71 7.82 -51.93 -0.41 0.30 16 41 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -37.68 389.27 -8.35 -46.03 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.92 Total: 7.66 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.48 Total: -0.21 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.08 Total: -57.90 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.28 Total: -18.98 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.68 -8.35 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965903415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.061 kcal (2) G-P(sol) polarization free energy of solvation -37.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds