Wall clock time and date at job start Tue Mar 31 2020 19:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47145 * 300.00751 * 3 2 1 6 6 H 1.48508 * 109.46891 * 60.00286 * 3 2 1 7 7 C 1.38814 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99760 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.58012 * 204.99847 * 10 9 7 12 12 C 1.52903 * 86.78668 * 220.66548 * 11 10 9 13 13 C 1.52916 * 88.04055 * 24.89715 * 12 11 10 14 14 C 1.52910 * 121.13896 * 150.61630 * 12 11 10 15 15 C 1.53950 * 86.78271 * 100.82611 * 14 12 11 16 16 N 1.46493 * 113.58091 * 139.33435 * 15 14 12 17 17 C 1.34784 * 119.99864 * 154.99763 * 16 15 14 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 15 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 15 20 20 N 1.46497 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.33882 * 122.76486 * 269.71233 * 20 19 17 22 22 O 1.21233 * 125.39053 * 359.97438 * 21 20 19 23 23 C 1.51307 * 109.21165 * 179.84313 * 21 20 19 24 24 C 1.54229 * 103.55194 * 0.38355 * 23 21 20 25 25 C 1.33879 * 122.76437 * 89.99694 * 20 19 17 26 26 O 1.21225 * 125.39319 * 0.02562 * 25 20 19 27 27 C 1.52907 * 121.13856 * 259.18618 * 12 11 10 28 28 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00100 * 0.02562 * 9 7 2 30 30 H 1.08998 * 112.88035 * 336.14366 * 10 9 7 31 31 H 1.09000 * 113.66440 * 106.19363 * 11 10 9 32 32 H 1.09000 * 113.74443 * 335.14944 * 11 10 9 33 33 H 1.08997 * 113.65906 * 89.57962 * 13 12 11 34 34 H 1.08997 * 113.66505 * 220.62641 * 13 12 11 35 35 H 1.08996 * 113.65929 * 346.34822 * 14 12 11 36 36 H 1.09008 * 113.74652 * 215.30484 * 14 12 11 37 37 H 1.09000 * 113.57520 * 270.05624 * 15 14 12 38 38 H 0.97000 * 120.00740 * 334.72455 * 16 15 14 39 39 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 40 40 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 41 41 H 1.09004 * 110.79523 * 241.78065 * 23 21 20 42 42 H 1.08994 * 110.42033 * 118.80791 * 23 21 20 43 43 H 1.09007 * 110.60745 * 241.26269 * 24 23 21 44 44 H 1.09005 * 110.73889 * 118.36402 * 24 23 21 45 45 H 1.08996 * 113.66598 * 144.70545 * 27 12 11 46 46 H 1.08997 * 113.66290 * 13.63858 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.2586 -4.8295 -0.5968 12 6 1.8333 -5.6836 0.5338 13 6 2.0031 -4.3996 1.3467 14 6 1.0599 -6.8778 1.0941 15 6 1.9761 -7.7651 0.2319 16 7 2.4114 -8.9895 0.9081 17 6 2.7662 -10.0695 0.1839 18 8 2.7203 -10.0292 -1.0273 19 6 3.2199 -11.3271 0.8794 20 7 3.5472 -12.3469 -0.1201 21 6 2.6470 -13.2233 -0.5828 22 8 1.4847 -13.2813 -0.2429 23 6 3.3092 -14.1275 -1.5992 24 6 4.7661 -13.6229 -1.6370 25 6 4.7725 -12.4828 -0.6421 26 8 5.7348 -11.8009 -0.3617 27 6 3.0117 -6.6273 0.2912 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 3.0654 -3.5646 -0.4067 31 1 1.5973 -5.1307 -1.5881 32 1 0.1781 -4.6980 -0.5398 33 1 1.1320 -4.1461 1.9509 34 1 2.9364 -4.3574 1.9081 35 1 0.0137 -6.9031 0.7897 36 1 1.1932 -7.0231 2.1662 37 1 1.5870 -7.9503 -0.7693 38 1 2.4482 -9.0218 1.8769 39 1 4.1032 -11.1114 1.4805 40 1 2.4216 -11.6935 1.5249 41 1 2.8402 -14.0192 -2.5772 42 1 3.2711 -15.1650 -1.2671 43 1 5.0219 -13.2635 -2.6338 44 1 5.4548 -14.4081 -1.3252 45 1 3.6945 -6.7011 1.1376 46 1 3.5244 -6.4528 -0.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965903415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:48 Heat of formation + Delta-G solvation = -67.427477 kcal Electronic energy + Delta-G solvation = -28169.672532 eV Core-core repulsion = 24060.294923 eV Total energy + Delta-G solvation = -4109.377609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.98136 -41.67820 -40.21192 -39.67870 -37.32846 -36.89958 -35.31741 -34.48226 -33.61037 -31.48402 -29.09983 -27.12116 -26.81484 -26.67931 -26.05646 -24.04128 -23.34350 -22.09838 -21.53819 -20.52079 -19.50265 -18.92351 -18.54936 -18.48435 -17.54439 -17.48282 -17.07696 -16.89570 -16.26316 -16.08621 -15.83589 -15.75847 -15.31007 -15.29494 -15.15292 -14.92124 -14.53062 -14.31884 -13.77303 -13.67201 -13.58830 -13.52761 -13.32226 -13.08584 -12.99189 -12.86939 -12.39305 -12.27004 -12.11380 -12.06976 -11.94080 -11.80357 -11.69067 -11.35181 -11.13388 -11.10138 -10.88835 -10.83540 -10.59986 -10.11509 -8.98609 -7.96053 -5.24192 0.48973 1.25996 1.39566 1.46002 1.46763 1.56948 1.69214 2.21712 2.55194 3.20517 3.26041 3.34963 3.45703 3.48669 3.56150 3.62816 3.67085 3.78249 3.97046 4.00109 4.09776 4.19431 4.25095 4.26451 4.31626 4.44594 4.58486 4.75845 4.76468 4.78468 4.89961 4.90176 4.92303 4.97695 5.00250 5.04939 5.08032 5.22904 5.42436 5.51148 5.57324 5.67849 5.72893 6.26633 6.27042 6.38828 6.69678 7.07978 7.32121 8.09686 8.32830 9.27504 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.001809 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.234322 B =15474.339038 C =15827.476433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.090 4.090 13 C -0.136 4.136 14 C -0.115 4.115 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.496 3.504 18 O -0.580 6.580 19 C 0.075 3.925 20 N -0.567 5.567 21 C 0.523 3.477 22 O -0.522 6.522 23 C -0.141 4.141 24 C -0.142 4.142 25 C 0.522 3.478 26 O -0.522 6.522 27 C -0.119 4.119 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.420 0.580 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.102 0.898 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -35.423 2.293 36.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.366 5.366 10 C 0.037 3.963 11 C -0.163 4.163 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.153 4.153 15 C 0.024 3.976 16 N -0.350 5.350 17 C 0.282 3.718 18 O -0.460 6.460 19 C -0.050 4.050 20 N -0.309 5.309 21 C 0.315 3.685 22 O -0.396 6.396 23 C -0.180 4.180 24 C -0.181 4.181 25 C 0.314 3.686 26 O -0.396 6.396 27 C -0.157 4.157 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.258 0.742 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.121 0.879 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.135 -34.923 1.771 36.142 hybrid contribution -0.344 1.771 0.415 1.851 sum 8.791 -33.152 2.186 34.368 Atomic orbital electron populations 1.69827 1.06602 1.25955 1.59732 1.25587 0.96430 1.01153 1.03907 0.85070 0.78226 0.79814 0.76639 1.19058 1.22140 1.21964 1.19741 0.91496 0.85460 1.40737 0.90670 1.42607 1.05353 1.01071 1.87610 1.21911 0.95026 0.83836 0.95536 1.23086 0.99920 0.95865 0.97391 1.21887 0.97794 0.92158 0.97294 1.23388 1.01069 0.95198 0.98025 1.23146 0.98706 0.92716 1.00744 1.22370 0.96061 0.81778 0.97378 1.45806 1.66363 1.11830 1.11050 1.21341 0.76582 0.85970 0.87885 1.90702 1.54996 1.84320 1.15937 1.21729 1.06287 0.85737 0.91267 1.46588 1.13563 1.30929 1.39829 1.21731 0.84760 0.80563 0.81447 1.90771 1.16761 1.71224 1.60827 1.22584 0.93977 1.01524 0.99926 1.22590 0.98820 0.96345 1.00323 1.21740 0.80454 0.85335 0.81035 1.90774 1.37116 1.49321 1.62373 1.23165 0.96179 0.93798 1.02605 0.94050 0.79467 0.91373 0.91844 0.90638 0.91367 0.91784 0.90696 0.87115 0.89061 0.74157 0.83900 0.83793 0.84590 0.82750 0.84686 0.82731 0.87942 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.34 13.06 21.65 0.28 -60.05 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -13.75 9.97 84.03 0.84 -12.91 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -37.68 5.40 -319.93 -1.73 -39.40 16 10 C 0.15 5.90 4.48 45.63 0.20 6.10 16 11 C -0.12 -4.15 7.59 30.88 0.23 -3.92 16 12 C -0.09 -2.42 1.11 -52.31 -0.06 -2.48 16 13 C -0.14 -4.52 7.64 30.89 0.24 -4.28 16 14 C -0.12 -2.40 7.59 30.88 0.23 -2.16 16 15 C 0.13 2.86 4.24 45.63 0.19 3.05 16 16 N -0.70 -12.03 5.35 -439.51 -2.35 -14.38 16 17 C 0.50 10.72 7.90 87.65 0.69 11.41 16 18 O -0.58 -17.99 16.03 -3.04 -0.05 -18.04 16 19 C 0.07 1.06 6.04 85.63 0.52 1.58 16 20 N -0.57 -8.76 2.04 -760.74 -1.55 -10.32 16 21 C 0.52 7.69 8.08 87.99 0.71 8.40 16 22 O -0.52 -11.63 17.47 -2.89 -0.05 -11.68 16 23 C -0.14 -0.49 7.03 30.46 0.21 -0.27 16 24 C -0.14 -0.51 7.03 30.46 0.21 -0.30 16 25 C 0.52 7.82 8.08 87.99 0.71 8.53 16 26 O -0.52 -11.90 17.48 -2.86 -0.05 -11.95 16 27 C -0.12 -2.82 7.64 30.89 0.24 -2.58 16 28 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.37 20.66 7.92 -92.71 -0.73 19.93 16 30 H 0.07 2.79 8.10 -2.39 -0.02 2.78 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.79 8.12 -2.38 -0.02 1.77 16 37 H 0.09 2.51 7.46 -2.39 -0.02 2.49 16 38 H 0.42 4.05 8.73 -92.71 -0.81 3.24 16 39 H 0.14 1.44 7.83 -2.39 -0.02 1.42 16 40 H 0.14 1.41 7.82 -2.39 -0.02 1.40 16 41 H 0.14 0.23 8.14 -2.38 -0.02 0.21 16 42 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.14 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.15 -0.40 8.14 -2.38 -0.02 -0.42 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -85.37 389.27 1.65 -83.73 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.52 Total: 27.17 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.64 Total: 6.01 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -5.35 Total: -124.15 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.15 Total: -41.68 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -85.37 1.65 -83.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965903415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.301 kcal (2) G-P(sol) polarization free energy of solvation -85.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds