Wall clock time and date at job start Tue Mar 31 2020 19:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48496 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46859 * 239.99415 * 3 2 1 6 6 H 1.48504 * 109.46920 * 119.99478 * 3 2 1 7 7 C 1.38809 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99899 * 154.71430 * 7 2 1 9 9 N 1.36935 * 120.00295 * 334.71857 * 7 2 1 10 10 C 1.47599 * 118.64413 * 331.02747 * 9 7 2 11 11 C 1.53597 * 112.33902 * 222.03650 * 10 9 7 12 12 C 1.50878 * 109.95575 * 40.83330 * 11 10 9 13 13 C 1.52569 * 109.35892 * 268.02566 * 12 11 10 14 14 C 1.47093 * 114.33028 * 85.00794 * 13 12 11 15 15 C 1.44583 * 118.64233 * 151.29053 * 9 7 2 16 16 H 1.09002 * 109.44963 * 209.29335 * 15 9 7 17 17 C 1.53001 * 109.45224 * 329.24124 * 15 9 7 18 18 N 1.46494 * 109.47236 * 305.00023 * 17 15 9 19 19 C 1.34775 * 120.00523 * 180.02562 * 18 17 15 20 20 O 1.21617 * 119.99512 * 359.97438 * 19 18 17 21 21 C 1.47287 * 120.00519 * 179.97438 * 19 18 17 22 22 C 1.36565 * 125.80667 * 179.71690 * 21 19 18 23 23 C 1.40061 * 106.92681 * 179.85396 * 22 21 19 24 24 C 1.36571 * 106.92565 * 0.40922 * 23 22 21 25 25 C 1.47288 * 125.80417 * 179.75356 * 24 23 22 26 26 N 1.34780 * 119.99502 * 179.97438 * 25 24 23 27 27 O 1.21605 * 120.00410 * 359.96546 * 25 24 23 28 28 O 1.34553 * 125.80222 * 0.02800 * 21 19 18 29 29 H 0.97001 * 120.00029 * 174.20033 * 1 2 3 30 30 H 1.09001 * 108.95023 * 342.83645 * 10 9 7 31 31 H 1.09004 * 108.94496 * 101.46694 * 10 9 7 32 32 H 1.09006 * 109.51087 * 280.63931 * 11 10 9 33 33 H 1.08997 * 109.36825 * 160.93617 * 11 10 9 34 34 H 1.09003 * 109.49207 * 148.06329 * 12 11 10 35 35 H 1.08996 * 109.48984 * 27.98807 * 12 11 10 36 36 H 1.09002 * 108.51332 * 323.75468 * 13 12 11 37 37 H 1.09002 * 108.39491 * 206.17490 * 13 12 11 38 38 H 1.08992 * 109.33211 * 176.93444 * 14 13 12 39 39 H 1.09003 * 109.18441 * 57.36968 * 14 13 12 40 40 H 1.08998 * 109.47158 * 64.99790 * 17 15 9 41 41 H 1.09001 * 109.47259 * 184.99535 * 17 15 9 42 42 H 0.97011 * 119.99730 * 359.97438 * 18 17 15 43 43 H 1.07995 * 126.53858 * 359.97438 * 22 21 19 44 44 H 1.08001 * 126.53994 * 180.17586 * 23 22 21 45 45 H 0.96992 * 120.00674 * 359.97438 * 26 25 24 46 46 H 0.97006 * 119.99866 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0126 -1.2472 -0.3990 9 7 1.4239 -2.3310 0.5075 10 6 0.4186 -2.1863 1.5785 11 6 0.5865 -3.2402 2.6831 12 6 2.0510 -3.4392 2.9866 13 6 2.5962 -4.5745 2.1254 14 6 3.0246 -4.1625 0.7799 15 6 1.8194 -3.6160 -0.0245 16 1 0.9851 -4.3132 0.0530 17 6 2.2172 -3.4587 -1.4935 18 7 1.1179 -2.8335 -2.2328 19 6 1.2435 -2.5952 -3.5534 20 8 2.2697 -2.8989 -4.1311 21 6 0.1380 -1.9670 -4.2969 22 6 0.1396 -1.6680 -5.6294 23 6 -1.1023 -1.0888 -5.9188 24 6 -1.8056 -1.0506 -4.7487 25 6 -3.1674 -0.5157 -4.5790 26 7 -3.7532 -0.5370 -3.3653 27 8 -3.7631 -0.0548 -5.5337 28 8 -1.0429 -1.5849 -3.7775 29 1 -0.4850 -0.8358 -0.0849 30 1 0.5116 -1.1938 2.0194 31 1 -0.5767 -2.2877 1.1457 32 1 0.1540 -4.1849 2.3537 33 1 0.0731 -2.9044 3.5841 34 1 2.1732 -3.6910 4.0401 35 1 2.5961 -2.5215 2.7660 36 1 1.8217 -5.3348 2.0243 37 1 3.4492 -5.0173 2.6398 38 1 3.4478 -5.0204 0.2576 39 1 3.7824 -3.3840 0.8680 40 1 3.1057 -2.8313 -1.5641 41 1 2.4301 -4.4393 -1.9192 42 1 0.2992 -2.5916 -1.7720 43 1 0.9443 -1.8460 -6.3273 44 1 -1.4383 -0.7359 -6.8827 45 1 -3.2783 -0.9048 -2.6038 46 1 -4.6502 -0.1851 -3.2535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968942225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:35 Heat of formation + Delta-G solvation = -45.377825 kcal Electronic energy + Delta-G solvation = -30406.302606 eV Core-core repulsion = 26297.881141 eV Total energy + Delta-G solvation = -4108.421464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68882 -39.41403 -39.08127 -38.18269 -34.79546 -33.93633 -33.84095 -32.95871 -32.01785 -30.71418 -30.07530 -27.15706 -25.90585 -24.43804 -23.36814 -22.58731 -21.65020 -20.87217 -20.14617 -19.76878 -19.28546 -18.61259 -17.69552 -16.97850 -16.65461 -16.49119 -15.68039 -15.44917 -14.90693 -14.64390 -14.56077 -14.13745 -14.07921 -13.83578 -13.67334 -13.34795 -13.13489 -12.99289 -12.89047 -12.81662 -12.27643 -12.13991 -11.94783 -11.48351 -11.09052 -10.79875 -10.61474 -10.37585 -10.27618 -10.16485 -10.14517 -10.05421 -10.03291 -9.98102 -9.84976 -9.70111 -9.31899 -8.80132 -8.45604 -8.35561 -6.99377 -6.13776 -3.36038 0.76313 2.01145 2.48761 3.11526 3.33807 3.44954 3.47700 3.48388 3.63695 3.68118 4.49542 4.75672 4.88670 4.95911 5.07798 5.22386 5.29989 5.33313 5.51061 5.54895 5.65990 5.69549 5.78562 5.83620 5.88805 5.93222 6.11028 6.20977 6.25044 6.36610 6.42431 6.46451 6.48756 6.53446 6.58259 6.64122 6.72667 6.78181 6.88511 6.97717 7.00871 7.11030 7.22598 7.93938 7.99139 8.03234 8.47126 8.51632 9.03393 9.73889 10.10941 11.10804 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004214 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.353809 B = 6643.250316 C = 7179.493203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.010 4.010 3 Si 1.050 2.950 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.054 0.946 9 N -0.589 5.589 10 C 0.158 3.842 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.175 3.825 16 H 0.043 0.957 17 C 0.129 3.871 18 N -0.672 5.672 19 C 0.593 3.407 20 O -0.534 6.534 21 C -0.016 4.016 22 C -0.150 4.150 23 C -0.130 4.130 24 C -0.059 4.059 25 C 0.613 3.387 26 N -0.837 5.837 27 O -0.528 6.528 28 O -0.142 6.142 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.411 0.589 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.413 0.587 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -6.838 -1.419 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.213 4.213 3 Si 0.881 3.119 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.479 4.479 8 H 0.071 0.929 9 N -0.312 5.312 10 C 0.033 3.967 11 C -0.175 4.175 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.176 4.176 15 C 0.066 3.934 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.320 5.320 19 C 0.377 3.623 20 O -0.414 6.414 21 C -0.071 4.071 22 C -0.171 4.171 23 C -0.151 4.151 24 C -0.113 4.113 25 C 0.397 3.603 26 N -0.400 5.400 27 O -0.406 6.406 28 O -0.037 6.037 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.184 0.816 44 H 0.183 0.817 45 H 0.243 0.757 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.892 -5.180 -2.079 6.287 hybrid contribution -0.114 -1.406 0.583 1.526 sum -3.007 -6.586 -1.496 7.393 Atomic orbital electron populations 1.70849 1.06518 1.29938 1.47532 1.25579 0.96381 1.00988 0.98377 0.83717 0.75145 0.76798 0.76252 1.21241 1.22089 1.22134 1.19781 0.98013 0.88595 1.41554 0.92873 1.43767 1.47990 1.01166 1.38237 1.21132 0.90851 0.97343 0.87379 1.21878 0.96320 0.99953 0.99367 1.20955 0.96732 0.99731 0.97103 1.20290 0.99599 0.97811 0.96189 1.21345 1.00039 1.00080 0.96123 1.20507 0.94488 0.88783 0.89632 0.93883 1.21591 0.90245 0.96094 0.91564 1.45594 1.20171 1.59202 1.06987 1.16628 0.84357 0.78979 0.82367 1.90818 1.27579 1.53817 1.69176 1.22708 0.86057 1.04431 0.93917 1.21891 0.98797 1.01726 0.94685 1.21902 0.93302 1.01005 0.98855 1.22212 0.94144 1.06916 0.88071 1.16609 0.82397 0.77660 0.83596 1.43700 1.20917 1.64733 1.10603 1.90883 1.62959 1.46813 1.39958 1.84119 1.23355 1.59442 1.36737 0.92260 0.91293 0.96647 0.93487 0.92956 0.93912 0.90613 0.93523 0.93873 0.93148 0.91616 0.90648 0.92585 0.75238 0.81586 0.81683 0.75668 0.75966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.26 12.61 55.49 0.70 -22.56 16 2 C -0.01 -0.25 4.57 -17.43 -0.08 -0.33 16 3 Si 1.05 23.99 29.99 -169.99 -5.10 18.89 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.35 -8.25 7.49 -15.06 -0.11 -8.37 16 8 H 0.05 1.34 6.83 -52.49 -0.36 0.98 16 9 N -0.59 -11.91 1.63 -164.68 -0.27 -12.18 16 10 C 0.16 3.13 4.49 -3.13 -0.01 3.12 16 11 C -0.14 -2.21 5.70 -27.49 -0.16 -2.37 16 12 C -0.11 -1.70 5.51 -28.02 -0.15 -1.85 16 13 C -0.10 -1.48 5.15 -29.79 -0.15 -1.63 16 14 C -0.14 -2.13 5.06 -28.58 -0.14 -2.27 16 15 C 0.17 3.05 2.19 -67.97 -0.15 2.90 16 16 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 17 C 0.13 2.32 4.52 -4.04 -0.02 2.30 16 18 N -0.67 -12.52 4.72 -61.43 -0.29 -12.81 16 19 C 0.59 11.31 7.81 -12.58 -0.10 11.21 16 20 O -0.53 -11.17 16.86 5.26 0.09 -11.08 16 21 C -0.02 -0.28 7.14 -36.51 -0.26 -0.54 16 22 C -0.15 -2.28 10.60 -39.50 -0.42 -2.70 16 23 C -0.13 -1.86 10.60 -39.50 -0.42 -2.28 16 24 C -0.06 -0.91 7.14 -36.51 -0.26 -1.17 16 25 C 0.61 9.01 8.08 -12.58 -0.10 8.91 16 26 N -0.84 -9.59 8.87 30.40 0.27 -9.32 16 27 O -0.53 -8.93 17.70 5.27 0.09 -8.84 16 28 O -0.14 -2.36 10.14 4.33 0.04 -2.32 16 29 H 0.27 6.63 6.39 -40.82 -0.26 6.37 16 30 H 0.07 1.58 6.79 -51.93 -0.35 1.23 16 31 H 0.02 0.32 7.15 -51.93 -0.37 -0.05 16 32 H 0.05 0.72 7.32 -51.93 -0.38 0.34 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 36 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.52 6.85 -51.93 -0.36 1.17 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.41 7.88 7.84 -40.82 -0.32 7.56 16 43 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 44 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.41 4.57 8.59 -40.82 -0.35 4.22 16 46 H 0.41 3.73 8.93 -40.82 -0.36 3.37 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -28.29 374.40 -7.84 -36.13 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.48 Total: 13.52 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.54 Total: 4.91 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.41 Total: -56.86 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.23 Total: -22.24 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.10 Total: 18.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.29 -7.84 -36.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968942225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.245 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds