Wall clock time and date at job start Tue Mar 31 2020 19:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48496 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46859 * 239.99415 * 3 2 1 6 6 H 1.48504 * 109.46920 * 119.99478 * 3 2 1 7 7 C 1.38809 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99899 * 154.71430 * 7 2 1 9 9 N 1.36935 * 120.00295 * 334.71857 * 7 2 1 10 10 C 1.47599 * 118.64413 * 331.02747 * 9 7 2 11 11 C 1.53597 * 112.33902 * 222.03650 * 10 9 7 12 12 C 1.50878 * 109.95575 * 40.83330 * 11 10 9 13 13 C 1.52569 * 109.35892 * 268.02566 * 12 11 10 14 14 C 1.47093 * 114.33028 * 85.00794 * 13 12 11 15 15 C 1.44583 * 118.64233 * 151.29053 * 9 7 2 16 16 H 1.09002 * 109.44963 * 209.29335 * 15 9 7 17 17 C 1.53001 * 109.45224 * 329.24124 * 15 9 7 18 18 N 1.46494 * 109.47236 * 305.00023 * 17 15 9 19 19 C 1.34775 * 120.00523 * 180.02562 * 18 17 15 20 20 O 1.21617 * 119.99512 * 359.97438 * 19 18 17 21 21 C 1.47287 * 120.00519 * 179.97438 * 19 18 17 22 22 C 1.36565 * 125.80667 * 179.71690 * 21 19 18 23 23 C 1.40061 * 106.92681 * 179.85396 * 22 21 19 24 24 C 1.36571 * 106.92565 * 0.40922 * 23 22 21 25 25 C 1.47288 * 125.80417 * 179.75356 * 24 23 22 26 26 N 1.34780 * 119.99502 * 179.97438 * 25 24 23 27 27 O 1.21605 * 120.00410 * 359.96546 * 25 24 23 28 28 O 1.34553 * 125.80222 * 0.02800 * 21 19 18 29 29 H 0.97001 * 120.00029 * 174.20033 * 1 2 3 30 30 H 1.09001 * 108.95023 * 342.83645 * 10 9 7 31 31 H 1.09004 * 108.94496 * 101.46694 * 10 9 7 32 32 H 1.09006 * 109.51087 * 280.63931 * 11 10 9 33 33 H 1.08997 * 109.36825 * 160.93617 * 11 10 9 34 34 H 1.09003 * 109.49207 * 148.06329 * 12 11 10 35 35 H 1.08996 * 109.48984 * 27.98807 * 12 11 10 36 36 H 1.09002 * 108.51332 * 323.75468 * 13 12 11 37 37 H 1.09002 * 108.39491 * 206.17490 * 13 12 11 38 38 H 1.08992 * 109.33211 * 176.93444 * 14 13 12 39 39 H 1.09003 * 109.18441 * 57.36968 * 14 13 12 40 40 H 1.08998 * 109.47158 * 64.99790 * 17 15 9 41 41 H 1.09001 * 109.47259 * 184.99535 * 17 15 9 42 42 H 0.97011 * 119.99730 * 359.97438 * 18 17 15 43 43 H 1.07995 * 126.53858 * 359.97438 * 22 21 19 44 44 H 1.08001 * 126.53994 * 180.17586 * 23 22 21 45 45 H 0.96992 * 120.00674 * 359.97438 * 26 25 24 46 46 H 0.97006 * 119.99866 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0126 -1.2472 -0.3990 9 7 1.4239 -2.3310 0.5075 10 6 0.4186 -2.1863 1.5785 11 6 0.5865 -3.2402 2.6831 12 6 2.0510 -3.4392 2.9866 13 6 2.5962 -4.5745 2.1254 14 6 3.0246 -4.1625 0.7799 15 6 1.8194 -3.6160 -0.0245 16 1 0.9851 -4.3132 0.0530 17 6 2.2172 -3.4587 -1.4935 18 7 1.1179 -2.8335 -2.2328 19 6 1.2435 -2.5952 -3.5534 20 8 2.2697 -2.8989 -4.1311 21 6 0.1380 -1.9670 -4.2969 22 6 0.1396 -1.6680 -5.6294 23 6 -1.1023 -1.0888 -5.9188 24 6 -1.8056 -1.0506 -4.7487 25 6 -3.1674 -0.5157 -4.5790 26 7 -3.7532 -0.5370 -3.3653 27 8 -3.7631 -0.0548 -5.5337 28 8 -1.0429 -1.5849 -3.7775 29 1 -0.4850 -0.8358 -0.0849 30 1 0.5116 -1.1938 2.0194 31 1 -0.5767 -2.2877 1.1457 32 1 0.1540 -4.1849 2.3537 33 1 0.0731 -2.9044 3.5841 34 1 2.1732 -3.6910 4.0401 35 1 2.5961 -2.5215 2.7660 36 1 1.8217 -5.3348 2.0243 37 1 3.4492 -5.0173 2.6398 38 1 3.4478 -5.0204 0.2576 39 1 3.7824 -3.3840 0.8680 40 1 3.1057 -2.8313 -1.5641 41 1 2.4301 -4.4393 -1.9192 42 1 0.2992 -2.5916 -1.7720 43 1 0.9443 -1.8460 -6.3273 44 1 -1.4383 -0.7359 -6.8827 45 1 -3.2783 -0.9048 -2.6038 46 1 -4.6502 -0.1851 -3.2535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968942225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:34 Heat of formation + Delta-G solvation = -64.250112 kcal Electronic energy + Delta-G solvation = -30407.120969 eV Core-core repulsion = 26297.881141 eV Total energy + Delta-G solvation = -4109.239828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.93436 -40.83705 -40.33666 -39.65114 -36.22715 -35.51769 -35.01807 -34.18334 -33.43978 -32.35798 -31.36648 -28.64840 -27.44786 -25.73730 -25.03384 -23.90832 -22.93311 -22.17881 -21.46785 -21.09895 -20.82153 -19.92019 -19.06101 -18.36614 -17.96538 -17.77856 -17.18271 -16.96560 -16.29107 -15.99296 -15.75878 -15.68168 -15.49971 -15.42822 -15.19226 -14.71146 -14.35743 -14.32124 -14.17806 -14.12161 -13.79844 -13.58687 -13.44965 -12.94000 -12.64044 -12.61143 -12.03269 -11.97846 -11.85897 -11.68968 -11.49173 -11.45816 -11.36303 -11.25453 -11.06954 -11.01185 -10.92439 -10.28367 -10.17883 -9.79927 -8.74472 -8.03408 -5.23437 -0.51071 0.77735 1.22935 1.58246 1.59568 1.77257 1.93766 1.97798 2.16384 2.43269 2.66793 3.28604 3.50016 3.55684 3.72001 3.85228 3.95903 4.00334 4.20510 4.32491 4.35387 4.37840 4.41676 4.50942 4.55340 4.68727 4.74302 4.90598 4.97037 5.02668 5.08792 5.13908 5.15537 5.25309 5.33059 5.37939 5.43696 5.48198 5.54581 5.57934 5.68616 5.70321 6.05524 6.13314 6.44557 6.62334 6.98007 6.99557 7.26001 7.93292 8.30711 9.19237 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004214 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.353809 B = 6643.250316 C = 7179.493203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.049 4.049 3 Si 1.079 2.921 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.329 4.329 8 H 0.033 0.967 9 N -0.593 5.593 10 C 0.165 3.835 11 C -0.127 4.127 12 C -0.105 4.105 13 C -0.101 4.101 14 C -0.127 4.127 15 C 0.174 3.826 16 H 0.059 0.941 17 C 0.132 3.868 18 N -0.673 5.673 19 C 0.591 3.409 20 O -0.559 6.559 21 C -0.048 4.048 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.065 4.065 25 C 0.613 3.387 26 N -0.818 5.818 27 O -0.552 6.552 28 O -0.150 6.150 29 H 0.263 0.737 30 H 0.032 0.968 31 H 0.006 0.994 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.408 0.592 43 H 0.184 0.816 44 H 0.190 0.810 45 H 0.417 0.583 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 -8.432 -1.084 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.249 4.249 3 Si 0.909 3.091 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.460 4.460 8 H 0.051 0.949 9 N -0.316 5.316 10 C 0.041 3.959 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.066 3.934 16 H 0.077 0.923 17 C 0.008 3.992 18 N -0.319 5.319 19 C 0.376 3.624 20 O -0.441 6.441 21 C -0.102 4.102 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.120 4.120 25 C 0.397 3.603 26 N -0.382 5.382 27 O -0.432 6.432 28 O -0.045 6.045 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.244 0.756 43 H 0.201 0.799 44 H 0.207 0.793 45 H 0.248 0.752 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.197 -6.800 -1.697 7.703 hybrid contribution -0.027 -0.931 0.477 1.047 sum -3.224 -7.731 -1.221 8.465 Atomic orbital electron populations 1.70876 1.06753 1.29787 1.49645 1.26107 0.96705 1.02619 0.99505 0.83292 0.74383 0.75151 0.76269 1.22230 1.22291 1.21487 1.19647 0.96799 0.89650 1.39860 0.94908 1.43797 1.47783 1.01394 1.38659 1.20977 0.90097 0.96837 0.88037 1.21783 0.97128 0.99317 0.98309 1.20921 0.95775 0.98751 0.98813 1.20277 1.00858 0.97564 0.95119 1.21264 0.98364 1.00097 0.97036 1.20686 0.95736 0.87624 0.89342 0.92327 1.21606 0.89071 0.96405 0.92156 1.45638 1.20065 1.59179 1.07052 1.16836 0.84573 0.78588 0.82375 1.90787 1.28655 1.55026 1.69610 1.22526 0.86379 1.06640 0.94649 1.22186 0.99367 0.99973 0.93977 1.22216 0.92587 1.00183 0.99541 1.22567 0.94500 1.06552 0.88341 1.16579 0.82122 0.77578 0.84069 1.43595 1.21354 1.63501 1.09709 1.90873 1.63381 1.48151 1.40818 1.84088 1.23324 1.59882 1.37244 0.92581 0.94982 0.97656 0.91690 0.91748 0.91693 0.94039 0.91840 0.91957 0.90676 0.94088 0.93401 0.90514 0.75598 0.79871 0.79271 0.75219 0.74461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.49 12.61 21.65 0.27 -48.22 16 2 C -0.05 -2.52 4.57 84.86 0.39 -2.13 16 3 Si 1.08 49.63 29.99 68.60 2.06 51.68 16 4 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.33 -15.83 7.49 84.03 0.63 -15.20 16 8 H 0.03 1.72 6.83 -2.91 -0.02 1.70 16 9 N -0.59 -24.03 1.63 -674.92 -1.10 -25.13 16 10 C 0.17 6.54 4.49 86.37 0.39 6.93 16 11 C -0.13 -3.85 5.70 30.11 0.17 -3.68 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.92 16 13 C -0.10 -2.61 5.15 28.61 0.15 -2.47 16 14 C -0.13 -3.75 5.06 29.39 0.15 -3.60 16 15 C 0.17 5.86 2.19 45.99 0.10 5.96 16 16 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 17 C 0.13 4.69 4.52 86.38 0.39 5.08 16 18 N -0.67 -25.22 4.72 -466.52 -2.20 -27.42 16 19 C 0.59 22.71 7.81 86.62 0.68 23.38 16 20 O -0.56 -23.50 16.86 -4.09 -0.07 -23.57 16 21 C -0.05 -1.64 7.14 24.26 0.17 -1.47 16 22 C -0.13 -3.93 10.60 22.32 0.24 -3.69 16 23 C -0.13 -3.39 10.60 22.32 0.24 -3.15 16 24 C -0.07 -1.96 7.14 24.26 0.17 -1.79 16 25 C 0.61 17.40 8.08 86.62 0.70 18.10 16 26 N -0.82 -17.92 8.87 -175.99 -1.56 -19.48 16 27 O -0.55 -18.08 17.70 -4.05 -0.07 -18.15 16 28 O -0.15 -4.97 10.14 -7.41 -0.08 -5.05 16 29 H 0.26 13.40 6.39 -92.71 -0.59 12.81 16 30 H 0.03 1.49 6.79 -2.39 -0.02 1.47 16 31 H 0.01 0.23 7.15 -2.39 -0.02 0.21 16 32 H 0.06 1.77 7.32 -2.38 -0.02 1.75 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 36 H 0.06 1.48 7.36 -2.39 -0.02 1.46 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.97 6.85 -2.39 -0.02 1.96 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.41 15.82 7.84 -92.70 -0.73 15.09 16 43 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 45 H 0.42 8.91 8.59 -92.71 -0.80 8.11 16 46 H 0.42 7.14 8.93 -92.70 -0.83 6.31 16 Total: -1.00 -61.74 374.40 0.85 -60.89 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -1.13 Total: 35.10 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 4.72 Total: 19.34 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.59 Total: -120.25 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.22 Total: -46.76 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.06 Total: 51.68 kcal Total: -61.74 0.85 -60.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968942225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.363 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds