Wall clock time and date at job start Tue Mar 31 2020 19:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00004 * 2 1 4 4 H 1.48497 * 109.47096 * 270.00611 * 3 2 1 5 5 H 1.48506 * 109.47058 * 30.00189 * 3 2 1 6 6 H 1.48493 * 109.47132 * 150.00181 * 3 2 1 7 7 C 1.38811 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00100 * 194.60975 * 7 2 1 9 9 N 1.36937 * 120.00106 * 14.60763 * 7 2 1 10 10 C 1.47597 * 118.64691 * 27.73983 * 9 7 2 11 11 C 1.53943 * 112.14758 * 137.88537 * 10 9 7 12 12 C 1.50882 * 110.09461 * 319.43785 * 11 10 9 13 13 C 1.52249 * 109.25784 * 91.83800 * 12 11 10 14 14 C 1.47101 * 114.51859 * 274.86196 * 13 12 11 15 15 C 1.44580 * 118.64128 * 207.76521 * 9 7 2 16 16 H 1.09001 * 109.45129 * 150.65987 * 15 9 7 17 17 C 1.53002 * 109.42992 * 30.72053 * 15 9 7 18 18 N 1.46496 * 109.46938 * 54.88338 * 17 15 9 19 19 C 1.34782 * 120.00092 * 179.97438 * 18 17 15 20 20 O 1.21599 * 119.99393 * 0.02562 * 19 18 17 21 21 C 1.47480 * 120.00160 * 179.97438 * 19 18 17 22 22 C 1.37811 * 126.77603 * 0.03036 * 21 19 18 23 23 O 1.33500 * 108.34785 * 179.97438 * 22 21 19 24 24 C 1.34881 * 109.88312 * 0.02562 * 23 22 21 25 25 C 1.46779 * 125.65345 * 179.97438 * 24 23 22 26 26 N 1.34773 * 119.99726 * 0.02562 * 25 24 23 27 27 O 1.21674 * 120.00087 * 180.02562 * 25 24 23 28 28 C 1.36058 * 108.69603 * 359.74171 * 24 23 22 29 29 H 0.96998 * 120.00142 * 359.97438 * 1 2 3 30 30 H 1.08997 * 108.95298 * 258.57885 * 10 9 7 31 31 H 1.09005 * 108.94607 * 17.19783 * 10 9 7 32 32 H 1.08999 * 109.37131 * 79.63151 * 11 10 9 33 33 H 1.09003 * 109.37031 * 199.37831 * 11 10 9 34 34 H 1.08999 * 109.49708 * 211.84911 * 12 11 10 35 35 H 1.08998 * 109.48737 * 331.92700 * 12 11 10 36 36 H 1.09000 * 108.26816 * 153.66303 * 13 12 11 37 37 H 1.08990 * 108.56302 * 36.27680 * 13 12 11 38 38 H 1.08997 * 109.32800 * 302.73230 * 14 13 12 39 39 H 1.09002 * 109.32669 * 183.08339 * 14 13 12 40 40 H 1.09006 * 109.47122 * 174.88222 * 17 15 9 41 41 H 1.09002 * 109.47181 * 294.88269 * 17 15 9 42 42 H 0.96998 * 120.00001 * 0.02562 * 18 17 15 43 43 H 1.08010 * 125.82789 * 359.93834 * 22 21 19 44 44 H 0.97003 * 120.00193 * 0.02562 * 26 25 24 45 45 H 0.97006 * 119.99978 * 180.02562 * 26 25 24 46 46 H 1.07993 * 126.69535 * 180.26177 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2174 0.2354 9 7 1.3588 -2.3688 -0.3001 10 6 0.1770 -2.3128 -1.1826 11 6 0.1656 -3.4585 -2.2107 12 6 1.5570 -3.6870 -2.7477 13 6 2.2547 -4.7431 -1.9016 14 6 2.9094 -4.2216 -0.6920 15 6 1.8566 -3.6045 0.2615 16 1 1.0302 -4.3034 0.3908 17 6 2.5025 -3.3225 1.6196 18 7 1.5423 -2.6304 2.4827 19 6 1.8934 -2.2792 3.7357 20 8 3.0076 -2.5365 4.1494 21 6 0.9269 -1.5820 4.6044 22 6 -0.3638 -1.2233 4.2812 23 8 -0.9073 -0.6130 5.3368 24 6 -0.0135 -0.5584 6.3455 25 6 -0.2486 0.0389 7.6655 26 7 -1.4426 0.5953 7.9503 27 8 0.6345 0.0318 8.5025 28 6 1.1404 -1.1535 5.9385 29 1 -0.4850 0.8400 0.0004 30 1 -0.7239 -2.3759 -0.5724 31 1 0.1766 -1.3608 -1.7136 32 1 -0.1913 -4.3703 -1.7319 33 1 -0.4994 -3.1986 -3.0343 34 1 1.4966 -4.0283 -3.7811 35 1 2.1210 -2.7553 -2.7044 36 1 3.0078 -5.2327 -2.5190 37 1 1.5190 -5.4895 -1.6024 38 1 3.6326 -3.4566 -0.9745 39 1 3.4254 -5.0350 -0.1819 40 1 2.7965 -4.2635 2.0845 41 1 3.3832 -2.6955 1.4799 42 1 0.6534 -2.4255 2.1527 43 1 -0.8522 -1.4043 3.3349 44 1 -2.1467 0.6006 7.2832 45 1 -1.5978 0.9904 8.8226 46 1 2.0436 -1.2740 6.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968960240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:44 Heat of formation + Delta-G solvation = -65.742772 kcal Electronic energy + Delta-G solvation = -29932.762533 eV Core-core repulsion = 25823.457978 eV Total energy + Delta-G solvation = -4109.304555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.90357 -40.64390 -40.32492 -39.46899 -36.01572 -35.20911 -35.00973 -34.24014 -33.21918 -32.43028 -31.13614 -28.63066 -27.31742 -25.19318 -24.85912 -24.81833 -23.11622 -22.04565 -21.35570 -20.75568 -20.67440 -19.81508 -18.31618 -17.88975 -17.61415 -17.44724 -17.25386 -17.05637 -16.50649 -16.17685 -15.91286 -15.70105 -15.49673 -15.37525 -15.17629 -14.83256 -14.40132 -14.31814 -14.23245 -13.76976 -13.66556 -13.34697 -13.14574 -12.87357 -12.80336 -12.70677 -12.35788 -11.98942 -11.75974 -11.51447 -11.36995 -11.29878 -11.21562 -11.17515 -11.17345 -10.90597 -10.85304 -10.31636 -9.98765 -9.73194 -8.52128 -7.77319 -5.19106 -0.15158 0.49022 1.41027 1.42899 1.47462 1.51861 1.91737 2.18283 2.39628 2.53869 2.59533 3.37484 3.45371 3.63721 3.66261 3.93334 4.07915 4.12282 4.28578 4.31783 4.38522 4.48569 4.54780 4.64990 4.71489 4.73157 4.85978 4.96400 5.05355 5.11374 5.17680 5.28709 5.31177 5.42216 5.44071 5.46732 5.58618 5.65018 5.72485 5.73057 5.79748 5.84378 5.96646 6.22279 6.51032 6.72397 7.05928 7.30574 7.32893 8.04063 8.41486 9.25565 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.003579 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.811811 B = 7822.095941 C = 8589.055093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 0.920 3.080 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.044 0.956 9 N -0.588 5.588 10 C 0.189 3.811 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.130 4.130 15 C 0.175 3.825 16 H 0.063 0.937 17 C 0.132 3.868 18 N -0.679 5.679 19 C 0.578 3.422 20 O -0.595 6.595 21 C -0.259 4.259 22 C 0.089 3.911 23 O -0.139 6.139 24 C -0.097 4.097 25 C 0.615 3.385 26 N -0.816 5.816 27 O -0.563 6.563 28 C -0.080 4.080 29 H 0.247 0.753 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.411 0.589 43 H 0.248 0.752 44 H 0.421 0.579 45 H 0.422 0.578 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 -5.865 4.216 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.214 4.214 3 Si 0.753 3.247 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.062 0.938 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.170 4.170 15 C 0.067 3.933 16 H 0.081 0.919 17 C 0.007 3.993 18 N -0.327 5.327 19 C 0.366 3.634 20 O -0.479 6.479 21 C -0.264 4.264 22 C 0.015 3.985 23 O -0.032 6.032 24 C -0.149 4.149 25 C 0.399 3.601 26 N -0.380 5.380 27 O -0.443 6.443 28 C -0.101 4.101 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.248 0.752 43 H 0.264 0.736 44 H 0.253 0.747 45 H 0.256 0.744 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.229 -5.882 4.933 10.545 hybrid contribution 0.306 1.683 -0.358 1.748 sum -6.923 -4.199 4.575 9.300 Atomic orbital electron populations 1.70049 1.04830 1.24932 1.55971 1.25081 0.95620 0.98661 1.02018 0.86015 0.78329 0.83473 0.76932 1.22035 1.22314 1.21960 1.18940 0.91316 0.85722 1.40178 0.93812 1.43784 1.32451 1.01758 1.53021 1.20812 0.87268 0.95551 0.89939 1.21958 0.96968 0.99491 0.98817 1.20861 0.96246 0.98866 0.98238 1.20209 0.99721 0.97740 0.96065 1.21302 0.98619 0.99746 0.97365 1.20667 0.94869 0.88428 0.89311 0.91884 1.21515 0.91906 0.95248 0.90604 1.45494 1.18098 1.57580 1.11493 1.17464 0.85954 0.78131 0.81849 1.90704 1.23147 1.58275 1.75731 1.20688 0.96818 1.12011 0.96837 1.25639 0.91755 0.90255 0.90847 1.83917 1.39308 1.59982 1.19961 1.21762 0.90390 1.11737 0.90984 1.16405 0.83469 0.77289 0.82898 1.43452 1.13664 1.59739 1.21152 1.90915 1.45444 1.60485 1.47481 1.21870 0.98620 0.95766 0.93875 0.94277 0.97075 0.94250 0.92001 0.92224 0.92073 0.94055 0.92325 0.91825 0.94127 0.90942 0.91382 0.94110 0.75237 0.73614 0.74721 0.74438 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.57 11.03 21.65 0.24 -44.33 16 2 C -0.02 -0.83 4.89 84.86 0.41 -0.42 16 3 Si 0.92 43.08 29.58 68.60 2.03 45.11 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.23 -10.87 7.64 84.03 0.64 -10.23 16 8 H 0.04 2.25 6.72 -2.91 -0.02 2.23 16 9 N -0.59 -23.49 1.77 -674.26 -1.20 -24.69 16 10 C 0.19 7.44 4.66 86.49 0.40 7.84 16 11 C -0.13 -4.10 5.71 30.22 0.17 -3.93 16 12 C -0.10 -3.10 5.51 29.66 0.16 -2.94 16 13 C -0.10 -2.63 5.12 28.51 0.15 -2.49 16 14 C -0.13 -3.87 5.08 29.40 0.15 -3.72 16 15 C 0.18 5.86 2.19 45.99 0.10 5.96 16 16 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 17 C 0.13 4.75 4.53 86.38 0.39 5.15 16 18 N -0.68 -24.74 4.70 -466.31 -2.19 -26.93 16 19 C 0.58 22.71 7.82 86.68 0.68 23.39 16 20 O -0.60 -27.49 16.94 -4.03 -0.07 -27.56 16 21 C -0.26 -8.68 6.16 -20.08 -0.12 -8.80 16 22 C 0.09 2.34 11.64 67.72 0.79 3.13 16 23 O -0.14 -3.35 10.33 -0.77 -0.01 -3.35 16 24 C -0.10 -2.68 7.09 24.00 0.17 -2.51 16 25 C 0.62 15.50 8.06 86.48 0.70 16.20 16 26 N -0.82 -11.81 8.87 -176.33 -1.56 -13.37 16 27 O -0.56 -18.45 17.68 -4.26 -0.08 -18.52 16 28 C -0.08 -2.63 10.41 22.63 0.24 -2.39 16 29 H 0.25 12.16 8.31 -92.71 -0.77 11.39 16 30 H 0.01 0.46 8.02 -2.39 -0.02 0.44 16 31 H 0.04 1.83 6.39 -2.38 -0.02 1.82 16 32 H 0.06 1.70 7.31 -2.39 -0.02 1.69 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.50 7.48 -2.39 -0.02 1.48 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.51 7.35 -2.39 -0.02 1.49 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 40 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.04 1.72 6.83 -2.39 -0.02 1.70 16 42 H 0.41 14.45 7.02 -92.71 -0.65 13.80 16 43 H 0.25 5.43 7.46 -2.91 -0.02 5.41 16 44 H 0.42 4.12 8.57 -92.71 -0.79 3.33 16 45 H 0.42 4.30 8.93 -92.70 -0.83 3.47 16 46 H 0.16 5.39 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -64.74 374.05 0.96 -63.77 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -1.23 Total: 25.62 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 5.03 Total: 24.24 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.71 Total: -109.32 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.15 Total: -49.43 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.74 0.96 -63.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968960240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.969 kcal (2) G-P(sol) polarization free energy of solvation -64.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds