Wall clock time and date at job start Tue Mar 31 2020 18:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48508 * 109.46987 * 239.99555 * 3 2 1 5 5 H 1.48489 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47194 * 120.00528 * 3 2 1 7 7 C 1.38808 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00023 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88458 * 37.42915 * 10 9 7 12 12 C 1.55162 * 111.00456 * 273.54675 * 10 9 7 13 13 C 1.54328 * 102.93985 * 206.42614 * 12 10 9 14 14 N 1.47015 * 107.27164 * 22.19238 * 13 12 10 15 15 C 1.34783 * 125.64744 * 181.02455 * 14 13 12 16 16 O 1.21279 * 120.00222 * 180.02562 * 15 14 13 17 17 C 1.50692 * 119.99733 * 0.02562 * 15 14 13 18 18 H 1.09002 * 110.42463 * 302.30983 * 17 15 14 19 19 C 1.54909 * 110.37560 * 64.62944 * 17 15 14 20 20 C 1.55135 * 101.65392 * 155.89748 * 19 17 15 21 21 C 1.54322 * 103.02006 * 324.34772 * 20 19 17 22 22 N 1.47439 * 107.23490 * 22.28319 * 21 20 19 23 23 C 1.46901 * 110.99961 * 123.25626 * 22 21 20 24 24 C 1.53000 * 109.46769 * 69.87863 * 23 22 21 25 25 F 1.39895 * 109.47411 * 59.99686 * 24 23 22 26 26 F 1.39898 * 109.46890 * 180.02562 * 24 23 22 27 27 F 1.39904 * 109.47059 * 299.99428 * 24 23 22 28 28 C 1.47428 * 108.70779 * 1.28831 * 14 13 12 29 29 H 0.96998 * 119.99625 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00377 * 0.02562 * 9 7 2 31 31 H 1.08991 * 110.71728 * 88.06180 * 12 10 9 32 32 H 1.09000 * 110.71542 * 324.78854 * 12 10 9 33 33 H 1.08995 * 109.88004 * 262.77601 * 13 12 10 34 34 H 1.08997 * 110.00568 * 141.68276 * 13 12 10 35 35 H 1.08997 * 110.98656 * 37.80800 * 19 17 15 36 36 H 1.09003 * 111.01961 * 274.00415 * 19 17 15 37 37 H 1.09003 * 110.71015 * 205.96369 * 20 19 17 38 38 H 1.09004 * 110.70681 * 82.72684 * 20 19 17 39 39 H 1.09003 * 109.88473 * 262.87599 * 21 20 19 40 40 H 1.08997 * 109.88802 * 141.69469 * 21 20 19 41 41 H 1.09002 * 109.47401 * 309.87571 * 23 22 21 42 42 H 1.09001 * 109.46874 * 189.87583 * 23 22 21 43 43 H 1.08996 * 110.36755 * 94.48050 * 28 14 13 44 44 H 1.08994 * 110.36704 * 216.80498 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9526 -3.5890 0.6195 12 6 2.4136 -4.0937 -1.4452 13 6 2.5170 -5.6289 -1.3268 14 7 1.7445 -6.0283 -0.1414 15 6 1.6035 -7.2881 0.3165 16 8 0.9394 -7.5020 1.3085 17 6 2.2713 -8.4308 -0.4041 18 1 1.9430 -8.4692 -1.4428 19 6 3.8120 -8.2883 -0.3302 20 6 4.2721 -9.7575 -0.5211 21 6 3.1789 -10.5623 0.2129 22 7 1.9773 -9.7102 0.2761 23 6 0.8237 -10.3804 -0.3387 24 6 0.3843 -11.5509 0.5433 25 9 0.0263 -11.0729 1.8084 26 9 -0.7139 -12.1895 -0.0425 27 9 1.4393 -12.4610 0.6700 28 6 1.1443 -4.8234 0.4598 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.3672 -3.6656 -1.7538 32 1 1.6211 -3.8129 -2.1388 33 1 3.5599 -5.9219 -1.2056 34 1 2.1006 -6.1005 -2.2168 35 1 4.1225 -7.9051 0.6418 36 1 4.1851 -7.6546 -1.1348 37 1 5.2459 -9.9197 -0.0589 38 1 4.2981 -10.0189 -1.5790 39 1 3.5130 -10.8077 1.2210 40 1 2.9572 -11.4757 -0.3391 41 1 1.1027 -10.7529 -1.3244 42 1 0.0018 -9.6713 -0.4374 43 1 0.1287 -4.6809 0.0906 44 1 1.1462 -4.9008 1.5470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970800475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:55 Heat of formation + Delta-G solvation = -156.331176 kcal Electronic energy + Delta-G solvation = -29971.885371 eV Core-core repulsion = 25316.795868 eV Total energy + Delta-G solvation = -4655.089503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.26097 -47.85529 -47.62945 -40.50333 -38.69827 -37.02085 -34.22352 -33.25649 -31.62544 -30.02953 -29.53323 -28.33183 -27.50222 -24.24303 -23.50146 -23.06911 -21.83903 -21.51634 -20.11842 -19.21381 -18.73192 -18.50587 -17.71745 -17.34579 -17.11933 -16.34259 -15.90219 -15.58346 -15.00169 -14.75206 -14.61353 -14.53289 -14.19297 -14.05690 -13.89204 -13.80580 -13.69832 -13.66049 -13.57137 -13.33859 -12.98601 -12.77086 -12.71271 -12.13136 -12.02068 -11.92792 -11.81548 -11.52284 -11.39673 -11.19154 -11.13006 -10.85621 -10.70961 -10.35832 -10.11287 -9.80785 -9.68184 -8.98911 -8.86398 -8.42420 -7.08317 -5.85200 -3.16080 2.41914 2.71105 2.81717 3.38830 3.39301 3.44469 3.45179 3.58310 3.79859 4.08373 4.16672 4.29131 4.51457 4.51939 4.63327 4.69834 4.74322 4.90488 4.99374 5.03380 5.18754 5.23550 5.28062 5.40848 5.44522 5.53758 5.56307 5.64967 5.71742 5.80735 5.92673 6.10692 6.17434 6.22756 6.32552 6.36066 6.52378 6.59117 6.87361 7.61742 7.69586 8.31543 8.33732 9.43732 9.97627 10.32368 11.36920 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.002378 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.231215 B =11771.250414 C =12442.709660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.531 3.469 16 O -0.517 6.517 17 C 0.063 3.937 18 H 0.085 0.915 19 C -0.119 4.119 20 C -0.140 4.140 21 C 0.031 3.969 22 N -0.502 5.502 23 C 0.008 3.992 24 C 0.460 3.540 25 F -0.166 7.166 26 F -0.186 7.186 27 F -0.185 7.185 28 C 0.101 3.899 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.014 -24.452 -5.382 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.350 5.350 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.048 4.048 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.178 4.178 21 C -0.096 4.096 22 N -0.227 5.227 23 C -0.122 4.122 24 C 0.405 3.595 25 F -0.147 7.147 26 F -0.167 7.167 27 F -0.167 7.167 28 C -0.022 4.022 29 H 0.067 0.933 30 H 0.221 0.779 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.588 -24.420 -4.241 25.646 hybrid contribution 0.191 0.582 -0.876 1.069 sum 6.779 -23.837 -5.117 25.305 Atomic orbital electron populations 1.69652 1.05162 1.26043 1.56895 1.24773 0.95529 0.97823 1.02477 0.86244 0.78531 0.83345 0.77886 1.21192 1.21645 1.21150 1.19151 0.91005 0.83784 1.43711 0.91036 1.42254 1.05831 0.99333 1.88133 1.21337 0.94180 0.85636 0.92806 0.91883 1.23417 1.02830 0.91206 1.02176 1.22203 0.95334 0.97706 0.87304 1.48419 1.51206 1.06078 1.29247 1.19804 0.81481 0.82094 0.84942 1.90734 1.39870 1.83306 1.25278 1.22432 0.97029 0.88765 0.96560 0.89763 1.22755 0.91410 0.97430 1.04141 1.22812 0.99557 0.94548 1.00911 1.23208 0.88875 0.95298 1.02170 1.62897 1.03727 1.02756 1.53280 1.23366 0.98369 0.95330 0.95182 1.20328 0.74751 0.83745 0.80680 1.93253 1.91711 1.87817 1.41926 1.93185 1.55629 1.83764 1.84155 1.93138 1.57213 1.70115 1.96208 1.22559 0.97376 0.83369 0.98846 0.93270 0.77928 0.90732 0.90558 0.91704 0.92302 0.89593 0.89146 0.89821 0.90918 0.89340 0.91131 0.90035 0.86221 0.91372 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -16.97 5.28 -51.23 -0.27 -17.24 16 10 C 0.17 3.18 3.70 -65.66 -0.24 2.94 16 11 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 12 C -0.16 -2.34 6.64 -24.89 -0.17 -2.50 16 13 C 0.10 1.14 6.12 -3.07 -0.02 1.12 16 14 N -0.61 -8.75 3.32 -170.39 -0.57 -9.32 16 15 C 0.53 7.68 7.25 -10.99 -0.08 7.60 16 16 O -0.52 -9.68 16.74 5.56 0.09 -9.59 16 17 C 0.06 0.64 2.23 -67.34 -0.15 0.49 16 18 H 0.08 0.68 7.81 -51.93 -0.41 0.28 16 19 C -0.12 -0.95 5.66 -24.59 -0.14 -1.09 16 20 C -0.14 -0.87 6.94 -24.91 -0.17 -1.04 16 21 C 0.03 0.25 5.63 -2.84 -0.02 0.24 16 22 N -0.50 -5.25 4.26 -224.75 -0.96 -6.21 16 23 C 0.01 0.07 4.71 -3.82 -0.02 0.05 16 24 C 0.46 4.73 3.26 37.16 0.12 4.86 16 25 F -0.17 -2.20 17.24 2.25 0.04 -2.16 16 26 F -0.19 -1.89 17.32 2.25 0.04 -1.85 16 27 F -0.19 -1.83 14.49 2.25 0.03 -1.80 16 28 C 0.10 1.73 6.53 -2.41 -0.02 1.72 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.39 9.84 7.71 -40.82 -0.31 9.52 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.62 5.99 -51.93 -0.31 0.31 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.09 0.58 6.37 -51.93 -0.33 0.25 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.49 5.99 -51.93 -0.31 0.18 16 41 H 0.08 0.50 7.96 -51.93 -0.41 0.08 16 42 H 0.12 1.13 8.07 -51.93 -0.42 0.71 16 43 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 44 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.93 363.84 -7.81 -39.74 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.26 Total: 5.49 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -1.14 Total: 7.38 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.07 Total: -59.32 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.93 -7.81 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970800475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.588 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds