Wall clock time and date at job start Tue Mar 31 2020 18:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48508 * 109.46987 * 239.99555 * 3 2 1 5 5 H 1.48489 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47194 * 120.00528 * 3 2 1 7 7 C 1.38808 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00023 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88458 * 37.42915 * 10 9 7 12 12 C 1.55162 * 111.00456 * 273.54675 * 10 9 7 13 13 C 1.54328 * 102.93985 * 206.42614 * 12 10 9 14 14 N 1.47015 * 107.27164 * 22.19238 * 13 12 10 15 15 C 1.34783 * 125.64744 * 181.02455 * 14 13 12 16 16 O 1.21279 * 120.00222 * 180.02562 * 15 14 13 17 17 C 1.50692 * 119.99733 * 0.02562 * 15 14 13 18 18 H 1.09002 * 110.42463 * 302.30983 * 17 15 14 19 19 C 1.54909 * 110.37560 * 64.62944 * 17 15 14 20 20 C 1.55135 * 101.65392 * 155.89748 * 19 17 15 21 21 C 1.54322 * 103.02006 * 324.34772 * 20 19 17 22 22 N 1.47439 * 107.23490 * 22.28319 * 21 20 19 23 23 C 1.46901 * 110.99961 * 123.25626 * 22 21 20 24 24 C 1.53000 * 109.46769 * 69.87863 * 23 22 21 25 25 F 1.39895 * 109.47411 * 59.99686 * 24 23 22 26 26 F 1.39898 * 109.46890 * 180.02562 * 24 23 22 27 27 F 1.39904 * 109.47059 * 299.99428 * 24 23 22 28 28 C 1.47428 * 108.70779 * 1.28831 * 14 13 12 29 29 H 0.96998 * 119.99625 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00377 * 0.02562 * 9 7 2 31 31 H 1.08991 * 110.71728 * 88.06180 * 12 10 9 32 32 H 1.09000 * 110.71542 * 324.78854 * 12 10 9 33 33 H 1.08995 * 109.88004 * 262.77601 * 13 12 10 34 34 H 1.08997 * 110.00568 * 141.68276 * 13 12 10 35 35 H 1.08997 * 110.98656 * 37.80800 * 19 17 15 36 36 H 1.09003 * 111.01961 * 274.00415 * 19 17 15 37 37 H 1.09003 * 110.71015 * 205.96369 * 20 19 17 38 38 H 1.09004 * 110.70681 * 82.72684 * 20 19 17 39 39 H 1.09003 * 109.88473 * 262.87599 * 21 20 19 40 40 H 1.08997 * 109.88802 * 141.69469 * 21 20 19 41 41 H 1.09002 * 109.47401 * 309.87571 * 23 22 21 42 42 H 1.09001 * 109.46874 * 189.87583 * 23 22 21 43 43 H 1.08996 * 110.36755 * 94.48050 * 28 14 13 44 44 H 1.08994 * 110.36704 * 216.80498 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9526 -3.5890 0.6195 12 6 2.4136 -4.0937 -1.4452 13 6 2.5170 -5.6289 -1.3268 14 7 1.7445 -6.0283 -0.1414 15 6 1.6035 -7.2881 0.3165 16 8 0.9394 -7.5020 1.3085 17 6 2.2713 -8.4308 -0.4041 18 1 1.9430 -8.4692 -1.4428 19 6 3.8120 -8.2883 -0.3302 20 6 4.2721 -9.7575 -0.5211 21 6 3.1789 -10.5623 0.2129 22 7 1.9773 -9.7102 0.2761 23 6 0.8237 -10.3804 -0.3387 24 6 0.3843 -11.5509 0.5433 25 9 0.0263 -11.0729 1.8084 26 9 -0.7139 -12.1895 -0.0425 27 9 1.4393 -12.4610 0.6700 28 6 1.1443 -4.8234 0.4598 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.3672 -3.6656 -1.7538 32 1 1.6211 -3.8129 -2.1388 33 1 3.5599 -5.9219 -1.2056 34 1 2.1006 -6.1005 -2.2168 35 1 4.1225 -7.9051 0.6418 36 1 4.1851 -7.6546 -1.1348 37 1 5.2459 -9.9197 -0.0589 38 1 4.2981 -10.0189 -1.5790 39 1 3.5130 -10.8077 1.2210 40 1 2.9572 -11.4757 -0.3391 41 1 1.1027 -10.7529 -1.3244 42 1 0.0018 -9.6713 -0.4374 43 1 0.1287 -4.6809 0.0906 44 1 1.1462 -4.9008 1.5470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970800475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:54 Heat of formation + Delta-G solvation = -178.518736 kcal Electronic energy + Delta-G solvation = -29972.847496 eV Core-core repulsion = 25316.795868 eV Total energy + Delta-G solvation = -4656.051628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.08769 -48.64487 -48.53342 -41.47396 -39.67581 -38.28828 -35.92811 -34.00129 -33.23989 -31.22348 -30.65592 -29.13408 -28.78494 -25.78954 -24.68223 -24.10704 -22.68689 -22.18573 -21.55565 -20.20186 -19.54867 -19.38042 -19.26593 -18.59099 -17.98552 -17.35596 -16.98464 -16.63717 -16.27253 -16.00619 -15.51903 -15.46667 -15.26566 -15.14476 -14.99505 -14.78769 -14.70851 -14.63440 -14.45005 -14.35478 -14.27326 -13.89243 -13.66663 -13.36575 -13.08661 -12.99348 -12.90293 -12.66205 -12.62771 -12.39325 -12.29752 -12.16738 -11.95166 -11.73875 -11.66219 -11.54423 -10.91831 -10.81819 -9.61806 -9.55732 -9.03545 -7.94011 -5.24173 1.49868 1.52762 1.58493 1.61692 1.64252 1.85962 2.53235 2.60124 2.83775 3.04909 3.31490 3.38763 3.47116 3.60392 3.74590 3.78831 3.91993 4.01224 4.06982 4.12493 4.17609 4.23680 4.28737 4.36069 4.49110 4.53663 4.67838 4.72031 4.83363 4.92168 4.98659 5.03968 5.09675 5.22719 5.28471 5.29824 5.45559 5.54683 5.60029 5.74991 6.26687 6.59292 7.20869 7.33331 8.05469 8.29005 9.29259 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.002378 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.231215 B =11771.250414 C =12442.709660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.060 0.940 12 C -0.144 4.144 13 C 0.104 3.896 14 N -0.612 5.612 15 C 0.525 3.475 16 O -0.571 6.571 17 C 0.071 3.929 18 H 0.117 0.883 19 C -0.117 4.117 20 C -0.127 4.127 21 C 0.030 3.970 22 N -0.534 5.534 23 C 0.012 3.988 24 C 0.457 3.543 25 F -0.190 7.190 26 F -0.186 7.186 27 F -0.182 7.182 28 C 0.110 3.890 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -25.992 -7.824 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.055 3.945 11 H 0.078 0.922 12 C -0.185 4.185 13 C -0.018 4.018 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.449 6.449 17 C -0.039 4.039 18 H 0.135 0.865 19 C -0.155 4.155 20 C -0.165 4.165 21 C -0.096 4.096 22 N -0.259 5.259 23 C -0.118 4.118 24 C 0.402 3.598 25 F -0.171 7.171 26 F -0.167 7.167 27 F -0.164 7.164 28 C -0.014 4.014 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.073 0.927 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.309 -26.013 -6.715 28.433 hybrid contribution -0.636 0.949 -0.041 1.143 sum 8.674 -25.064 -6.756 27.370 Atomic orbital electron populations 1.69819 1.06737 1.26178 1.59362 1.25580 0.96312 1.01191 1.03646 0.85210 0.77146 0.79100 0.78282 1.19916 1.22616 1.20571 1.19568 0.91588 0.84721 1.41213 0.90024 1.42425 1.05427 1.00651 1.88530 1.21500 0.93627 0.83997 0.95350 0.92202 1.23200 1.02765 0.93965 0.98557 1.22356 0.97126 0.94999 0.87274 1.48476 1.51138 1.05301 1.29782 1.20791 0.80607 0.82801 0.84420 1.90712 1.42281 1.84062 1.27838 1.22444 0.97926 0.86580 0.96992 0.86533 1.22798 0.89596 0.99199 1.03952 1.22795 0.99046 0.92497 1.02212 1.23223 0.88663 0.95810 1.01909 1.62693 1.04987 1.03524 1.54725 1.23398 0.97746 0.94428 0.96212 1.20627 0.74741 0.84372 0.80012 1.93205 1.91984 1.88172 1.43776 1.93180 1.55761 1.83845 1.83960 1.93138 1.56970 1.70105 1.96171 1.22199 0.96814 0.84730 0.97679 0.94050 0.79481 0.89553 0.91978 0.88390 0.88969 0.91753 0.86629 0.88879 0.88382 0.90998 0.89807 0.86283 0.87110 0.92688 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 2 C -0.08 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -12.67 9.98 84.03 0.84 -11.83 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -35.33 5.28 -316.00 -1.67 -36.99 16 10 C 0.17 6.06 3.70 46.46 0.17 6.24 16 11 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 12 C -0.14 -4.03 6.64 31.79 0.21 -3.82 16 13 C 0.10 2.03 6.12 86.73 0.53 2.56 16 14 N -0.61 -16.56 3.32 -811.38 -2.70 -19.26 16 15 C 0.53 14.63 7.25 87.65 0.64 15.27 16 16 O -0.57 -21.90 16.74 -3.03 -0.05 -21.95 16 17 C 0.07 1.21 2.23 44.64 0.10 1.31 16 18 H 0.12 1.27 7.81 -2.39 -0.02 1.25 16 19 C -0.12 -1.41 5.66 31.98 0.18 -1.23 16 20 C -0.13 -1.03 6.94 31.77 0.22 -0.81 16 21 C 0.03 0.40 5.63 86.65 0.49 0.89 16 22 N -0.53 -10.10 4.26 -864.96 -3.68 -13.78 16 23 C 0.01 0.19 4.71 86.30 0.41 0.59 16 24 C 0.46 8.99 3.26 71.98 0.24 9.23 16 25 F -0.19 -5.16 17.24 44.97 0.78 -4.38 16 26 F -0.19 -3.60 17.32 44.97 0.78 -2.82 16 27 F -0.18 -3.35 14.49 44.97 0.65 -2.69 16 28 C 0.11 3.85 6.53 86.93 0.57 4.42 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.37 19.75 7.71 -92.71 -0.71 19.04 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.34 5.99 -2.39 -0.01 1.32 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 36 H 0.12 0.81 6.37 -2.39 -0.02 0.80 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 0.88 5.99 -2.39 -0.01 0.86 16 41 H 0.12 0.96 7.96 -2.39 -0.02 0.94 16 42 H 0.11 1.95 8.07 -2.39 -0.02 1.93 16 43 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 44 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -73.22 363.84 1.79 -71.43 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.32 Total: 22.77 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 5.05 Total: 19.10 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -7.77 Total: -128.25 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 2.21 Total: -9.90 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.22 1.79 -71.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970800475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.085 kcal (2) G-P(sol) polarization free energy of solvation -73.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds