Wall clock time and date at job start Tue Mar 31 2020 18:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46799 * 299.99776 * 3 2 1 6 6 H 1.48493 * 109.46853 * 59.99595 * 3 2 1 7 7 C 1.38814 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99757 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.91768 * 37.44408 * 10 9 7 12 12 C 1.55159 * 111.00401 * 273.54042 * 10 9 7 13 13 C 1.54316 * 102.94465 * 206.42312 * 12 10 9 14 14 N 1.47029 * 107.27095 * 22.19228 * 13 12 10 15 15 C 1.34771 * 125.65000 * 181.01803 * 14 13 12 16 16 O 1.21281 * 120.00242 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00143 * 0.03110 * 15 14 13 18 18 H 1.09008 * 109.90607 * 59.64117 * 17 15 14 19 19 C 1.53997 * 109.91651 * 298.54704 * 17 15 14 20 20 C 1.54599 * 105.13815 * 239.22432 * 19 17 15 21 21 C 1.54937 * 103.08133 * 337.95045 * 20 19 17 22 22 N 1.47896 * 110.08653 * 180.85673 * 17 15 14 23 23 C 1.46897 * 110.99782 * 265.28952 * 22 17 15 24 24 C 1.53000 * 109.47165 * 189.99769 * 23 22 17 25 25 F 1.39899 * 109.47433 * 59.99760 * 24 23 22 26 26 F 1.39911 * 109.47283 * 179.97438 * 24 23 22 27 27 F 1.39905 * 109.47237 * 299.99635 * 24 23 22 28 28 C 1.47421 * 108.70087 * 1.28960 * 14 13 12 29 29 H 0.97006 * 120.00091 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00600 * 359.97438 * 9 7 2 31 31 H 1.09005 * 110.71480 * 88.05986 * 12 10 9 32 32 H 1.08998 * 110.71860 * 324.78975 * 12 10 9 33 33 H 1.09001 * 109.88700 * 262.77902 * 13 12 10 34 34 H 1.08996 * 109.88530 * 141.60822 * 13 12 10 35 35 H 1.08999 * 110.31386 * 120.30792 * 19 17 15 36 36 H 1.09002 * 110.30705 * 358.13634 * 19 17 15 37 37 H 1.09002 * 110.72617 * 96.39862 * 20 19 17 38 38 H 1.08997 * 110.72339 * 219.50901 * 20 19 17 39 39 H 1.09000 * 110.66912 * 155.93889 * 21 20 19 40 40 H 1.09003 * 110.66687 * 279.06779 * 21 20 19 41 41 H 1.09003 * 109.47588 * 309.99588 * 23 22 17 42 42 H 1.09002 * 109.47510 * 69.99577 * 23 22 17 43 43 H 1.08999 * 110.37190 * 94.47875 * 28 14 13 44 44 H 1.09007 * 110.36628 * 216.80094 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6196 12 6 2.4136 -4.0937 -1.4452 13 6 2.5171 -5.6288 -1.3268 14 7 1.7447 -6.0283 -0.1412 15 6 1.6038 -7.2880 0.3166 16 8 0.9397 -7.5020 1.3087 17 6 2.2714 -8.4308 -0.4040 18 1 3.3505 -8.2773 -0.4238 19 6 1.7296 -8.5324 -1.8419 20 6 1.1221 -9.9503 -1.9452 21 6 1.8455 -10.7249 -0.8150 22 7 1.9566 -9.7093 0.2696 23 6 3.0106 -10.0741 1.2255 24 6 2.7820 -11.5056 1.7150 25 9 2.8168 -12.3823 0.6254 26 9 3.7862 -11.8533 2.6250 27 9 1.5342 -11.5903 2.3420 28 6 1.1445 -4.8234 0.4599 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.3672 -3.6655 -1.7539 32 1 1.6210 -3.8130 -2.1388 33 1 3.5600 -5.9218 -1.2057 34 1 2.0990 -6.0984 -2.2171 35 1 2.5404 -8.4149 -2.5610 36 1 0.9609 -7.7783 -2.0107 37 1 0.0471 -9.9232 -1.7674 38 1 1.3399 -10.3934 -2.9170 39 1 1.2486 -11.5768 -0.4895 40 1 2.8336 -11.0487 -1.1420 41 1 3.9829 -10.0082 0.7371 42 1 2.9835 -9.3911 2.0745 43 1 0.1289 -4.6810 0.0908 44 1 1.1465 -4.9008 1.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970800476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:58 Heat of formation + Delta-G solvation = -152.236546 kcal Electronic energy + Delta-G solvation = -29967.848536 eV Core-core repulsion = 25312.936590 eV Total energy + Delta-G solvation = -4654.911946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.40261 -47.98439 -47.76308 -40.52003 -38.62776 -37.00554 -34.25121 -33.33476 -31.63712 -30.00528 -29.53119 -28.34579 -27.47013 -24.26191 -23.52916 -23.05534 -21.78767 -21.58958 -20.13173 -19.37522 -18.83130 -18.59476 -17.82923 -17.36387 -16.90923 -16.19832 -16.05603 -15.60390 -14.93656 -14.79758 -14.60319 -14.50560 -14.41996 -14.23961 -14.06684 -13.95971 -13.88659 -13.69151 -13.44270 -13.23860 -13.00157 -12.77091 -12.46198 -12.21856 -12.03520 -11.97063 -11.69440 -11.56783 -11.32834 -11.20236 -11.09139 -10.89364 -10.73078 -10.34180 -10.07151 -9.82838 -9.71825 -9.00625 -8.93261 -8.44227 -7.08894 -5.86177 -3.16977 2.34827 2.69832 2.79515 3.34638 3.37916 3.43649 3.46018 3.47044 3.73302 4.03200 4.19109 4.27559 4.47848 4.51184 4.65922 4.67992 4.79657 4.97029 4.99418 5.10014 5.17827 5.24220 5.31074 5.40486 5.49314 5.51564 5.54258 5.68314 5.71121 5.77928 5.92015 6.09692 6.12882 6.20519 6.28295 6.33155 6.51472 6.57633 6.86425 7.61939 7.68378 8.30278 8.32326 9.42923 9.96791 10.31551 11.36027 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.002327 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.086546 B =12029.054322 C =12455.538492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.532 3.468 16 O -0.520 6.520 17 C 0.057 3.943 18 H 0.083 0.917 19 C -0.122 4.122 20 C -0.123 4.123 21 C 0.023 3.977 22 N -0.488 5.488 23 C 0.003 3.997 24 C 0.458 3.542 25 F -0.184 7.184 26 F -0.183 7.183 27 F -0.169 7.169 28 C 0.102 3.898 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.831 -24.350 -4.414 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.350 5.350 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.054 4.054 18 H 0.100 0.900 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.104 4.104 22 N -0.212 5.212 23 C -0.127 4.127 24 C 0.404 3.596 25 F -0.166 7.166 26 F -0.164 7.164 27 F -0.150 7.150 28 C -0.021 4.021 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.087 -24.378 -3.497 25.627 hybrid contribution 0.978 0.706 -0.422 1.278 sum 8.065 -23.672 -3.919 25.314 Atomic orbital electron populations 1.69670 1.05160 1.25812 1.57035 1.24777 0.95529 0.97831 1.02511 0.86106 0.78772 0.83944 0.77250 1.20492 1.21790 1.21768 1.19239 0.91055 0.83758 1.43478 0.90944 1.42266 1.05847 0.99339 1.88114 1.21337 0.94149 0.85654 0.92846 0.91948 1.23418 1.02839 0.91232 1.02147 1.22194 0.95031 0.97716 0.87592 1.48425 1.51183 1.06039 1.29336 1.19820 0.81685 0.81975 0.84714 1.90720 1.39887 1.83242 1.25610 1.22294 0.99500 0.89388 0.94251 0.89955 1.22458 1.01535 0.98834 0.93189 1.22524 1.01184 0.94130 0.98251 1.23824 1.00502 0.95235 0.90832 1.64506 1.40779 1.01862 1.14081 1.23500 0.96134 0.91962 1.01133 1.20346 0.74436 0.89351 0.75487 1.93169 1.96175 1.72867 1.54385 1.93199 1.61289 1.93476 1.68456 1.93244 1.42166 1.96824 1.82755 1.22561 0.97449 0.83354 0.98781 0.93367 0.77914 0.90758 0.90490 0.92136 0.91800 0.89970 0.89742 0.90169 0.90205 0.88602 0.92374 0.90086 0.85655 0.91310 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -16.93 5.28 -51.23 -0.27 -17.20 16 10 C 0.17 3.17 3.70 -65.66 -0.24 2.93 16 11 H 0.06 1.18 8.13 -51.93 -0.42 0.75 16 12 C -0.16 -2.34 6.64 -24.90 -0.17 -2.51 16 13 C 0.10 1.15 6.00 -3.06 -0.02 1.13 16 14 N -0.61 -8.75 3.28 -170.38 -0.56 -9.30 16 15 C 0.53 7.69 7.05 -10.99 -0.08 7.61 16 16 O -0.52 -9.66 16.72 5.56 0.09 -9.56 16 17 C 0.06 0.58 2.37 -67.80 -0.16 0.42 16 18 H 0.08 0.68 7.57 -51.92 -0.39 0.28 16 19 C -0.12 -0.99 5.00 -25.37 -0.13 -1.12 16 20 C -0.12 -0.92 7.05 -24.87 -0.18 -1.10 16 21 C 0.02 0.19 4.71 -1.63 -0.01 0.18 16 22 N -0.49 -5.14 4.48 -223.53 -1.00 -6.14 16 23 C 0.00 0.02 5.16 -3.83 -0.02 0.00 16 24 C 0.46 4.37 3.07 37.16 0.11 4.48 16 25 F -0.18 -1.65 13.56 2.25 0.03 -1.62 16 26 F -0.18 -1.76 17.32 2.25 0.04 -1.72 16 27 F -0.17 -2.00 17.24 2.25 0.04 -1.96 16 28 C 0.10 1.73 6.53 -2.41 -0.02 1.71 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.39 9.82 7.71 -40.82 -0.31 9.51 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.80 6.77 -51.93 -0.35 0.45 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.83 6.98 -51.93 -0.36 0.47 16 40 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 41 H 0.08 0.52 7.81 -51.93 -0.41 0.11 16 42 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 44 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -31.61 362.42 -7.91 -39.52 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.30 Total: 5.65 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.14 Total: 6.78 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -1.11 Total: -59.15 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.61 -7.91 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970800476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.717 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds