Wall clock time and date at job start Tue Mar 31 2020 18:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46799 * 299.99776 * 3 2 1 6 6 H 1.48493 * 109.46853 * 59.99595 * 3 2 1 7 7 C 1.38814 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99757 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.91768 * 37.44408 * 10 9 7 12 12 C 1.55159 * 111.00401 * 273.54042 * 10 9 7 13 13 C 1.54316 * 102.94465 * 206.42312 * 12 10 9 14 14 N 1.47029 * 107.27095 * 22.19228 * 13 12 10 15 15 C 1.34771 * 125.65000 * 181.01803 * 14 13 12 16 16 O 1.21281 * 120.00242 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00143 * 0.03110 * 15 14 13 18 18 H 1.09008 * 109.90607 * 59.64117 * 17 15 14 19 19 C 1.53997 * 109.91651 * 298.54704 * 17 15 14 20 20 C 1.54599 * 105.13815 * 239.22432 * 19 17 15 21 21 C 1.54937 * 103.08133 * 337.95045 * 20 19 17 22 22 N 1.47896 * 110.08653 * 180.85673 * 17 15 14 23 23 C 1.46897 * 110.99782 * 265.28952 * 22 17 15 24 24 C 1.53000 * 109.47165 * 189.99769 * 23 22 17 25 25 F 1.39899 * 109.47433 * 59.99760 * 24 23 22 26 26 F 1.39911 * 109.47283 * 179.97438 * 24 23 22 27 27 F 1.39905 * 109.47237 * 299.99635 * 24 23 22 28 28 C 1.47421 * 108.70087 * 1.28960 * 14 13 12 29 29 H 0.97006 * 120.00091 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00600 * 359.97438 * 9 7 2 31 31 H 1.09005 * 110.71480 * 88.05986 * 12 10 9 32 32 H 1.08998 * 110.71860 * 324.78975 * 12 10 9 33 33 H 1.09001 * 109.88700 * 262.77902 * 13 12 10 34 34 H 1.08996 * 109.88530 * 141.60822 * 13 12 10 35 35 H 1.08999 * 110.31386 * 120.30792 * 19 17 15 36 36 H 1.09002 * 110.30705 * 358.13634 * 19 17 15 37 37 H 1.09002 * 110.72617 * 96.39862 * 20 19 17 38 38 H 1.08997 * 110.72339 * 219.50901 * 20 19 17 39 39 H 1.09000 * 110.66912 * 155.93889 * 21 20 19 40 40 H 1.09003 * 110.66687 * 279.06779 * 21 20 19 41 41 H 1.09003 * 109.47588 * 309.99588 * 23 22 17 42 42 H 1.09002 * 109.47510 * 69.99577 * 23 22 17 43 43 H 1.08999 * 110.37190 * 94.47875 * 28 14 13 44 44 H 1.09007 * 110.36628 * 216.80094 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6196 12 6 2.4136 -4.0937 -1.4452 13 6 2.5171 -5.6288 -1.3268 14 7 1.7447 -6.0283 -0.1412 15 6 1.6038 -7.2880 0.3166 16 8 0.9397 -7.5020 1.3087 17 6 2.2714 -8.4308 -0.4040 18 1 3.3505 -8.2773 -0.4238 19 6 1.7296 -8.5324 -1.8419 20 6 1.1221 -9.9503 -1.9452 21 6 1.8455 -10.7249 -0.8150 22 7 1.9566 -9.7093 0.2696 23 6 3.0106 -10.0741 1.2255 24 6 2.7820 -11.5056 1.7150 25 9 2.8168 -12.3823 0.6254 26 9 3.7862 -11.8533 2.6250 27 9 1.5342 -11.5903 2.3420 28 6 1.1445 -4.8234 0.4599 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.3672 -3.6655 -1.7539 32 1 1.6210 -3.8130 -2.1388 33 1 3.5600 -5.9218 -1.2057 34 1 2.0990 -6.0984 -2.2171 35 1 2.5404 -8.4149 -2.5610 36 1 0.9609 -7.7783 -2.0107 37 1 0.0471 -9.9232 -1.7674 38 1 1.3399 -10.3934 -2.9170 39 1 1.2486 -11.5768 -0.4895 40 1 2.8336 -11.0487 -1.1420 41 1 3.9829 -10.0082 0.7371 42 1 2.9835 -9.3911 2.0745 43 1 0.1289 -4.6810 0.0908 44 1 1.1465 -4.9008 1.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970800476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:57 Heat of formation + Delta-G solvation = -174.188069 kcal Electronic energy + Delta-G solvation = -29968.800426 eV Core-core repulsion = 25312.936590 eV Total energy + Delta-G solvation = -4655.863836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.16009 -48.71028 -48.58163 -41.50388 -39.61634 -38.25975 -35.94161 -34.10112 -33.25062 -31.22940 -30.64942 -29.14763 -28.74017 -25.78697 -24.70981 -24.09889 -22.62060 -22.26851 -21.58652 -20.34484 -19.59874 -19.41580 -19.26647 -18.64392 -17.87152 -17.38505 -16.93135 -16.67946 -16.17805 -15.74075 -15.63903 -15.54233 -15.30060 -15.13987 -15.13369 -14.96377 -14.81215 -14.69475 -14.59690 -14.43993 -14.17221 -13.73566 -13.59437 -13.34582 -13.10174 -13.02100 -12.80771 -12.73458 -12.62911 -12.31674 -12.28361 -12.09101 -11.97553 -11.74105 -11.71454 -11.56170 -10.94412 -10.82058 -9.64424 -9.63049 -9.03869 -7.94597 -5.24676 1.49605 1.50666 1.58262 1.60319 1.64606 1.83095 2.51739 2.58953 2.75150 3.01996 3.28773 3.37382 3.45905 3.54280 3.74345 3.80749 3.89660 4.00679 4.05608 4.11940 4.21706 4.28136 4.30185 4.37965 4.51067 4.52954 4.65389 4.73433 4.82459 4.86361 4.96908 5.02188 5.09994 5.18517 5.22687 5.27942 5.45204 5.52415 5.56734 5.66977 6.26315 6.58383 7.19620 7.32955 8.04972 8.28427 9.29056 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.002327 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.086546 B =12029.054322 C =12455.538492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.145 4.145 13 C 0.105 3.895 14 N -0.613 5.613 15 C 0.526 3.474 16 O -0.572 6.572 17 C 0.065 3.935 18 H 0.115 0.885 19 C -0.119 4.119 20 C -0.120 4.120 21 C 0.026 3.974 22 N -0.520 5.520 23 C 0.005 3.995 24 C 0.460 3.540 25 F -0.179 7.179 26 F -0.184 7.184 27 F -0.188 7.188 28 C 0.110 3.890 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.053 0.947 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -25.825 -6.495 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.226 1.226 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.055 3.945 11 H 0.079 0.921 12 C -0.185 4.185 13 C -0.017 4.017 14 N -0.347 5.347 15 C 0.315 3.685 16 O -0.450 6.450 17 C -0.046 4.046 18 H 0.133 0.867 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.101 4.101 22 N -0.245 5.245 23 C -0.124 4.124 24 C 0.405 3.595 25 F -0.161 7.161 26 F -0.165 7.165 27 F -0.169 7.169 28 C -0.014 4.014 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.097 -25.908 -5.611 28.367 hybrid contribution 0.054 1.053 0.277 1.090 sum 10.151 -24.855 -5.334 27.373 Atomic orbital electron populations 1.69829 1.06746 1.26021 1.59505 1.25579 0.96313 1.01185 1.03724 0.85080 0.78447 0.79825 0.76428 1.18603 1.22129 1.22576 1.19637 0.91592 0.84673 1.40897 0.89974 1.42441 1.05443 1.00674 1.88485 1.21504 0.93639 0.83987 0.95341 0.92095 1.23204 1.02745 0.93976 0.98600 1.22341 0.96903 0.94990 0.87491 1.48477 1.51116 1.05280 1.29851 1.20791 0.80907 0.82645 0.84151 1.90698 1.42270 1.83963 1.28088 1.22311 1.00621 0.87254 0.94425 0.86743 1.22528 1.02274 0.98532 0.92369 1.22529 0.99920 0.94025 0.99313 1.23840 1.01562 0.94413 0.90247 1.64350 1.42179 1.02658 1.15333 1.23496 0.97376 0.90770 1.00761 1.20470 0.73645 0.89966 0.75393 1.93174 1.96100 1.72812 1.53975 1.93195 1.61172 1.93549 1.68616 1.93207 1.43544 1.96950 1.83208 1.22202 0.96768 0.84701 0.97742 0.94066 0.79487 0.89578 0.91996 0.88550 0.88864 0.86330 0.91316 0.92165 0.87510 0.89706 0.90161 0.86712 0.87042 0.92858 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 2 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.24 -12.47 9.98 84.03 0.84 -11.63 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -35.20 5.28 -315.99 -1.67 -36.87 16 10 C 0.17 6.03 3.70 46.46 0.17 6.20 16 11 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 12 C -0.14 -4.05 6.64 31.78 0.21 -3.84 16 13 C 0.10 2.05 6.00 86.73 0.52 2.57 16 14 N -0.61 -16.51 3.28 -811.36 -2.66 -19.17 16 15 C 0.53 14.57 7.05 87.66 0.62 15.19 16 16 O -0.57 -21.68 16.72 -3.03 -0.05 -21.73 16 17 C 0.07 1.11 2.37 44.31 0.11 1.22 16 18 H 0.12 1.25 7.57 -2.38 -0.02 1.23 16 19 C -0.12 -1.45 5.00 31.48 0.16 -1.30 16 20 C -0.12 -1.43 7.05 31.80 0.22 -1.20 16 21 C 0.03 0.35 4.71 86.56 0.41 0.76 16 22 N -0.52 -9.87 4.48 -861.12 -3.86 -13.73 16 23 C 0.01 0.09 5.16 86.30 0.45 0.53 16 24 C 0.46 8.16 3.07 71.98 0.22 8.38 16 25 F -0.18 -2.85 13.56 44.97 0.61 -2.24 16 26 F -0.18 -3.31 17.32 44.97 0.78 -2.53 16 27 F -0.19 -4.45 17.24 44.97 0.78 -3.68 16 28 C 0.11 3.83 6.53 86.93 0.57 4.40 16 29 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 30 H 0.37 19.72 7.71 -92.71 -0.71 19.01 16 31 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.38 6.33 -2.39 -0.02 1.36 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 1.09 6.77 -2.39 -0.02 1.08 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 1.33 6.98 -2.39 -0.02 1.32 16 40 H 0.08 0.75 7.37 -2.39 -0.02 0.73 16 41 H 0.12 1.00 7.81 -2.39 -0.02 0.98 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.00 8.00 -2.39 -0.02 1.98 16 44 H 0.06 2.14 8.03 -2.38 -0.02 2.12 16 Total: -1.00 -72.09 362.42 1.51 -70.57 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.32 Total: 23.25 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 4.96 Total: 17.53 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -7.90 Total: -127.93 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 9 Polarization: -10.61 SS G_CDS: 2.16 Total: -8.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.09 1.51 -70.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970800476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.615 kcal (2) G-P(sol) polarization free energy of solvation -72.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds