Wall clock time and date at job start Tue Mar 31 2020 18:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48496 * 109.47289 * 239.99996 * 3 2 1 5 5 H 1.48499 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47021 * 119.99802 * 3 2 1 7 7 C 1.38815 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47212 * 325.00109 * 10 9 7 12 12 C 1.53002 * 109.47035 * 85.00344 * 10 9 7 13 13 C 1.53001 * 109.46963 * 59.99511 * 12 10 9 14 14 C 1.53000 * 109.46886 * 60.00501 * 13 12 10 15 15 C 1.52993 * 109.47165 * 299.99212 * 14 13 12 16 16 H 1.09001 * 109.47730 * 300.00964 * 15 14 13 17 17 N 1.46497 * 109.47458 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99920 * 85.00374 * 17 15 14 19 19 O 1.21497 * 120.00054 * 359.97438 * 18 17 15 20 20 C 1.48331 * 120.00034 * 180.02562 * 18 17 15 21 21 N 1.31595 * 127.15707 * 359.68067 * 20 18 17 22 22 O 1.21563 * 111.54476 * 179.84122 * 21 20 18 23 23 C 1.32813 * 111.51843 * 0.39821 * 22 21 20 24 24 C 1.35702 * 106.70353 * 359.80494 * 23 22 21 25 25 C 1.50034 * 123.86692 * 179.83183 * 24 23 22 26 26 O 1.43623 * 107.82294 * 345.26393 * 25 24 23 27 27 C 1.42997 * 114.38283 * 50.02458 * 26 25 24 28 28 C 1.50668 * 130.82502 * 179.83742 * 23 22 21 29 29 C 1.53002 * 109.47066 * 60.00395 * 15 14 13 30 30 H 0.97000 * 119.99762 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00553 * 359.97438 * 9 7 2 32 32 H 1.08992 * 109.47060 * 179.97438 * 12 10 9 33 33 H 1.09004 * 109.46930 * 299.99770 * 12 10 9 34 34 H 1.09001 * 109.46652 * 180.02562 * 13 12 10 35 35 H 1.08992 * 109.47514 * 300.00067 * 13 12 10 36 36 H 1.09002 * 109.47131 * 59.99984 * 14 13 12 37 37 H 1.09000 * 109.46968 * 179.97438 * 14 13 12 38 38 H 0.97000 * 120.00413 * 265.00719 * 17 15 14 39 39 H 1.08991 * 109.79427 * 104.84436 * 25 24 23 40 40 H 1.08996 * 109.79010 * 225.63474 * 25 24 23 41 41 H 1.09001 * 109.40319 * 49.72206 * 27 26 25 42 42 H 1.08998 * 109.39461 * 169.45626 * 27 26 25 43 43 H 1.08992 * 109.82830 * 44.53760 * 28 23 22 44 44 H 1.09001 * 109.87785 * 283.63236 * 28 23 22 45 45 H 1.09001 * 109.47600 * 180.02562 * 29 15 14 46 46 H 1.09002 * 109.47097 * 59.99954 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 -0.5889 12 6 2.4219 -4.0357 1.4376 13 6 1.1435 -4.1847 2.2649 14 6 0.2664 -5.2801 1.6552 15 6 -0.0975 -4.9013 0.2183 16 1 -0.6424 -3.9573 0.2182 17 7 -0.9379 -5.9498 -0.3653 18 6 -2.2701 -5.9369 -0.1617 19 8 -2.7740 -5.0560 0.5062 20 6 -3.1209 -6.9988 -0.7521 21 7 -2.7278 -8.0097 -1.4973 22 8 -3.6638 -8.7118 -1.8270 23 6 -4.8124 -8.2497 -1.3463 24 6 -4.5166 -7.1312 -0.6370 25 6 -5.5412 -6.2957 0.0723 26 8 -6.8358 -6.6766 -0.4192 27 6 -7.0786 -8.0857 -0.4126 28 6 -6.2196 -8.7694 -1.4875 29 6 1.1808 -4.7522 -0.6091 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.9665 -4.9798 1.4376 33 1 3.0469 -3.2553 1.8719 34 1 1.4028 -4.4542 3.2888 35 1 0.5986 -3.2408 2.2649 36 1 0.8114 -6.2241 1.6553 37 1 -0.6442 -5.3866 2.2449 38 1 -0.5355 -6.6534 -0.8982 39 1 -5.4861 -6.4766 1.1457 40 1 -5.3634 -5.2402 -0.1336 41 1 -6.8249 -8.4924 0.5663 42 1 -8.1326 -8.2724 -0.6186 43 1 -6.2316 -9.8491 -1.3386 44 1 -6.6060 -8.5286 -2.4779 45 1 0.9217 -4.4819 -1.6328 46 1 1.7258 -5.6962 -0.6091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981538691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:44 Heat of formation + Delta-G solvation = -11.607284 kcal Electronic energy + Delta-G solvation = -29356.957685 eV Core-core repulsion = 25250.000621 eV Total energy + Delta-G solvation = -4106.957064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.41808 -39.93626 -39.21976 -38.02578 -34.59744 -34.33842 -33.56544 -33.01394 -31.02920 -30.91485 -29.31673 -28.05370 -26.84692 -24.81889 -24.34203 -23.61160 -21.92303 -21.74850 -21.22252 -20.13529 -18.74494 -18.19418 -18.00290 -17.25699 -17.04732 -16.39183 -15.98872 -15.75816 -15.22966 -14.94282 -14.68851 -14.61263 -14.10395 -14.05427 -13.74725 -13.66141 -13.56844 -13.21612 -13.05210 -12.43924 -12.13224 -12.07960 -11.84311 -11.77061 -11.53389 -11.40502 -10.91859 -10.81813 -10.73724 -10.66027 -10.40561 -10.24784 -10.20278 -10.10976 -10.08988 -9.63309 -9.50823 -9.49372 -8.96537 -8.78832 -6.92392 -5.71799 -3.01193 0.83195 1.31336 2.44108 2.91586 3.09874 3.30195 3.46317 3.50798 3.52069 3.77690 4.08033 4.29981 4.43892 4.59403 4.62230 4.68130 4.93858 5.01176 5.07465 5.17130 5.18860 5.21039 5.31832 5.41044 5.46949 5.61129 5.68910 5.71044 5.72053 5.82694 5.89116 6.06418 6.09573 6.18106 6.32356 6.41963 6.59503 6.61088 6.64169 6.78851 6.84401 7.01264 7.10785 7.40162 7.70766 7.73279 8.11073 8.45998 9.56973 10.14110 10.48482 11.50302 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.002670 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.079790 B =10483.090941 C =11351.052901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.180 3.820 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.109 4.109 14 C -0.121 4.121 15 C 0.145 3.855 16 H 0.103 0.897 17 N -0.706 5.706 18 C 0.593 3.407 19 O -0.510 6.510 20 C 0.003 3.997 21 N -0.337 5.337 22 O 0.131 5.869 23 C -0.031 4.031 24 C -0.199 4.199 25 C 0.139 3.861 26 O -0.373 6.373 27 C 0.060 3.940 28 C -0.068 4.068 29 C -0.128 4.128 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 -22.484 -1.070 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.147 4.147 14 C -0.159 4.159 15 C 0.042 3.958 16 H 0.121 0.879 17 N -0.356 5.356 18 C 0.376 3.624 19 O -0.383 6.383 20 C -0.156 4.156 21 N -0.040 5.040 22 O 0.059 5.941 23 C -0.097 4.097 24 C -0.204 4.204 25 C 0.062 3.938 26 O -0.291 6.291 27 C -0.018 4.018 28 C -0.107 4.107 29 C -0.167 4.167 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.499 -21.878 -1.083 24.291 hybrid contribution 0.163 0.645 0.081 0.670 sum -10.337 -21.233 -1.003 23.637 Atomic orbital electron populations 1.69658 1.05026 1.25754 1.57391 1.24739 0.95469 0.97604 1.03042 0.86301 0.78510 0.83799 0.77746 1.21387 1.21768 1.21346 1.19175 0.90919 0.84135 1.42928 0.91265 1.42501 1.05757 0.99603 1.88546 1.20158 0.93968 0.85882 0.93092 0.92976 1.22185 0.96895 0.99528 0.99001 1.21354 0.96703 0.99197 0.97445 1.21854 0.99756 0.98924 0.95384 1.21199 0.91185 0.90879 0.92560 0.87912 1.46056 1.06032 1.30223 1.53310 1.16839 0.81998 0.83108 0.80468 1.90850 1.73326 1.35447 1.38711 1.23013 0.93605 0.97572 1.01383 1.74661 1.10370 1.04795 1.14213 1.84633 1.11497 1.42393 1.55526 1.23992 0.91001 0.95760 0.98898 1.21388 0.94300 0.99476 1.05253 1.21032 0.77648 0.98805 0.96281 1.88156 1.32986 1.22176 1.85832 1.22741 1.00020 0.81738 0.97259 1.21059 0.84532 1.01989 1.03072 1.22094 0.95260 0.99748 0.99613 0.93447 0.78059 0.93844 0.91886 0.93168 0.90230 0.92671 0.92244 0.76423 0.90249 0.85759 0.92058 0.86878 0.87702 0.87636 0.91282 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.71 4.28 -53.42 -0.23 -17.94 16 10 C 0.18 3.47 3.10 -67.92 -0.21 3.26 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.14 -2.38 5.61 -26.73 -0.15 -2.53 16 13 C -0.11 -1.89 5.77 -26.73 -0.15 -2.04 16 14 C -0.12 -1.91 5.49 -26.73 -0.15 -2.06 16 15 C 0.14 2.43 2.28 -67.93 -0.15 2.27 16 16 H 0.10 2.15 5.94 -51.93 -0.31 1.84 16 17 N -0.71 -10.47 5.08 -54.60 -0.28 -10.74 16 18 C 0.59 9.59 7.81 -12.11 -0.09 9.50 16 19 O -0.51 -9.74 15.95 5.37 0.09 -9.65 16 20 C 0.00 0.04 7.18 -82.90 -0.60 -0.56 16 21 N -0.34 -4.35 11.90 33.26 0.40 -3.95 16 22 O 0.13 1.44 11.17 20.05 0.22 1.66 16 23 C -0.03 -0.30 7.50 -35.23 -0.26 -0.57 16 24 C -0.20 -2.41 6.15 -104.93 -0.65 -3.06 16 25 C 0.14 1.56 6.67 35.68 0.24 1.80 16 26 O -0.37 -3.72 10.76 -35.23 -0.38 -4.10 16 27 C 0.06 0.35 6.77 37.49 0.25 0.60 16 28 C -0.07 -0.37 6.56 -27.56 -0.18 -0.55 16 29 C -0.13 -2.08 5.08 -26.73 -0.14 -2.21 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.38 10.18 6.06 -40.82 -0.25 9.94 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 5.09 8.38 -40.82 -0.34 4.75 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 1.57 8.00 -51.93 -0.42 1.15 16 41 H 0.06 0.31 8.10 -51.93 -0.42 -0.11 16 42 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -32.91 372.31 -8.10 -41.01 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.74 Total: 11.58 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.49 Total: -3.34 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.61 Total: -60.29 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.07 Total: -12.10 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.91 -8.10 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981538691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.400 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds