Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00447 * 2 1 4 4 H 1.48507 * 109.47002 * 274.97586 * 3 2 1 5 5 H 1.48499 * 109.47101 * 34.97537 * 3 2 1 6 6 H 1.48494 * 109.47106 * 154.97759 * 3 2 1 7 7 C 1.38810 * 119.99387 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 187.85388 * 7 2 1 9 9 N 1.36939 * 120.00270 * 8.12496 * 7 2 1 10 10 C 1.47374 * 125.57973 * 13.52046 * 9 7 2 11 11 C 1.54864 * 104.82230 * 155.27880 * 10 9 7 12 12 C 1.54914 * 101.76527 * 37.07247 * 11 10 9 13 13 N 1.46497 * 112.33383 * 86.21226 * 12 11 10 14 14 C 1.34784 * 119.99877 * 61.01034 * 13 12 11 15 15 O 1.21276 * 119.99999 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99868 * 180.02562 * 14 13 12 17 17 C 1.53251 * 109.62103 * 299.63438 * 16 14 13 18 18 C 1.50628 * 109.14764 * 184.86951 * 17 16 14 19 19 O 1.21228 * 119.26654 * 208.91820 * 18 17 16 20 20 N 1.34143 * 121.37511 * 28.73154 * 18 17 16 21 21 C 1.34146 * 122.58692 * 359.63599 * 20 18 17 22 22 O 1.21222 * 119.36057 * 180.54172 * 21 20 18 23 23 C 1.50595 * 121.27646 * 0.56940 * 21 20 18 24 24 C 1.53582 * 109.09123 * 211.32796 * 12 11 10 25 25 C 1.55379 * 106.21666 * 112.46781 * 24 12 11 26 26 C 1.54756 * 104.40960 * 335.76988 * 25 24 12 27 27 C 1.46984 * 125.57932 * 193.21628 * 9 7 2 28 28 H 1.09003 * 111.81306 * 59.09537 * 27 9 7 29 29 H 0.97000 * 119.99447 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.37130 * 274.11681 * 10 9 7 31 31 H 1.09001 * 110.36165 * 36.44481 * 10 9 7 32 32 H 1.08998 * 110.97175 * 155.19338 * 11 10 9 33 33 H 1.09002 * 110.96716 * 278.95610 * 11 10 9 34 34 H 0.96995 * 120.00284 * 241.01798 * 13 12 11 35 35 H 1.08998 * 109.61803 * 60.00255 * 16 14 13 36 36 H 1.08995 * 109.51908 * 304.56719 * 17 16 14 37 37 H 1.08997 * 109.51827 * 64.75876 * 17 16 14 38 38 H 0.96993 * 118.70880 * 179.65930 * 20 18 17 39 39 H 1.09000 * 109.51863 * 210.97686 * 23 21 20 40 40 H 1.08999 * 109.52322 * 90.79071 * 23 21 20 41 41 H 1.09005 * 110.01845 * 232.38025 * 24 12 11 42 42 H 1.08999 * 110.02009 * 353.77085 * 24 12 11 43 43 H 1.08997 * 110.75847 * 216.82174 * 25 24 12 44 44 H 1.09000 * 110.08643 * 94.38301 * 25 24 12 45 45 H 1.09004 * 110.66988 * 278.91285 * 26 25 24 46 46 H 1.09002 * 110.66482 * 155.78527 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3927 2.1070 -1.3949 5 1 1.5044 2.6200 0.8026 6 1 3.5964 1.4119 0.5922 7 6 2.0101 -1.2022 0.0005 8 1 3.0826 -1.2066 0.1284 9 7 1.3357 -2.3822 -0.1665 10 6 -0.0565 -2.5158 -0.6312 11 6 -0.1346 -3.9352 -1.2457 12 6 0.7764 -4.7441 -0.2889 13 7 0.0515 -5.2400 0.8835 14 6 -0.9873 -6.0843 0.7261 15 8 -1.3215 -6.4339 -0.3860 16 6 -1.7334 -6.5940 1.9322 17 6 -0.7735 -7.3685 2.8418 18 6 -1.5521 -7.9737 3.9804 19 8 -1.0008 -8.1555 5.0447 20 7 -2.8427 -8.3120 3.8420 21 6 -3.5188 -8.1294 2.6979 22 8 -4.6872 -8.4474 2.6406 23 6 -2.8542 -7.5375 1.4830 24 6 1.4521 -5.8764 -1.0764 25 6 2.9660 -5.5295 -1.1224 26 6 3.0150 -3.9937 -0.9389 27 6 1.8838 -3.7232 0.0822 28 1 2.2137 -3.8408 1.1144 29 1 -0.4849 0.8401 0.0004 30 1 -0.7467 -2.4270 0.2077 31 1 -0.2780 -1.7624 -1.3871 32 1 -1.1565 -4.3138 -1.2243 33 1 0.2616 -3.9429 -2.2611 34 1 0.3189 -4.9607 1.7731 35 1 -2.1598 -5.7541 2.4806 36 1 -0.2919 -8.1624 2.2711 37 1 -0.0164 -6.6897 3.2343 38 1 -3.3055 -8.7036 4.5992 39 1 -3.5885 -6.9800 0.9015 40 1 -2.4347 -8.3365 0.8717 41 1 1.2895 -6.8296 -0.5732 42 1 1.0527 -5.9161 -2.0898 43 1 3.3983 -5.8132 -2.0819 44 1 3.4893 -6.0283 -0.3067 45 1 2.8113 -3.4868 -1.8821 46 1 3.9794 -3.6850 -0.5355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992333453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = -87.004693 kcal Electronic energy + Delta-G solvation = -30229.820343 eV Core-core repulsion = 26119.593803 eV Total energy + Delta-G solvation = -4110.226541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90671 -40.32499 -39.16848 -38.44339 -35.72593 -34.32034 -34.16957 -33.46730 -31.52237 -29.86989 -29.17738 -26.79565 -26.56999 -24.91867 -23.88192 -23.54393 -21.35107 -20.11698 -19.82446 -19.55945 -18.99186 -18.13105 -17.60419 -17.24211 -17.01497 -16.17059 -15.83147 -15.49797 -15.03695 -14.95856 -14.74562 -14.66029 -14.37680 -13.95535 -13.78544 -13.56248 -13.20501 -12.90849 -12.72484 -12.23719 -11.97407 -11.88233 -11.81149 -11.62560 -11.30831 -11.11340 -11.10089 -10.83406 -10.75854 -10.62792 -10.62260 -10.57011 -10.25435 -10.22506 -9.95390 -9.88859 -9.73136 -9.53596 -8.75135 -8.62220 -6.86129 -5.81133 -3.16338 1.11564 2.33393 2.39365 2.55688 3.11179 3.35209 3.41219 3.42882 3.55765 3.99566 4.15009 4.27780 4.43124 4.56252 4.72073 4.91782 4.96511 5.04366 5.12682 5.23482 5.36303 5.44381 5.49901 5.57479 5.62887 5.69350 5.75708 5.88092 5.98007 6.04947 6.12908 6.25406 6.32093 6.42461 6.43018 6.49233 6.65961 6.68679 6.87388 6.96261 7.01444 7.42869 7.44447 7.54397 7.61036 7.73390 8.19423 8.24623 9.12555 9.74540 10.41652 11.31341 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003189 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.217398 B = 8778.434170 C = 9300.564859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.594 5.594 10 C 0.175 3.825 11 C -0.144 4.144 12 C 0.160 3.840 13 N -0.699 5.699 14 C 0.523 3.477 15 O -0.528 6.528 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.530 3.470 19 O -0.499 6.499 20 N -0.676 5.676 21 C 0.528 3.472 22 O -0.499 6.499 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.162 3.838 28 H 0.048 0.952 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.412 0.588 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -16.109 3.285 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.184 4.184 12 C 0.074 3.926 13 N -0.348 5.348 14 C 0.307 3.693 15 O -0.405 6.405 16 C -0.138 4.138 17 C -0.175 4.175 18 C 0.319 3.681 19 O -0.371 6.371 20 N -0.342 5.342 21 C 0.317 3.683 22 O -0.372 6.372 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.169 4.169 27 C 0.054 3.946 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.512 -16.256 2.845 16.572 hybrid contribution 0.316 0.973 0.884 1.352 sum -1.196 -15.283 3.729 15.777 Atomic orbital electron populations 1.69957 1.04989 1.25240 1.55952 1.24858 0.95573 0.97831 1.01775 0.86154 0.78743 0.83633 0.77535 1.21612 1.21789 1.20557 1.18971 0.90729 0.82493 1.43648 0.90710 1.44478 1.10932 0.99501 1.76919 1.21382 0.85852 0.90959 0.96788 1.23344 0.99127 0.98141 0.97765 1.21673 0.92493 0.93069 0.85406 1.45902 1.32097 1.46539 1.10294 1.19877 0.80388 0.79244 0.89750 1.90727 1.66079 1.58107 1.25559 1.21551 0.95882 0.99869 0.96502 1.21978 0.98566 1.02321 0.94642 1.20805 0.81133 0.76252 0.89909 1.90819 1.67751 1.50573 1.27991 1.44898 1.13321 1.59250 1.16744 1.21016 0.86602 0.76530 0.84179 1.90805 1.16030 1.47181 1.83137 1.21773 0.98768 1.00904 0.94677 1.22470 0.94979 0.97100 1.00362 1.22552 0.95627 0.97269 1.00819 1.22916 0.99330 0.93776 1.00928 1.21783 0.90918 0.85862 0.96035 0.93466 0.93698 0.95581 0.91784 0.91126 0.91371 0.76437 0.86700 0.86264 0.85909 0.74803 0.85742 0.85968 0.92190 0.91161 0.92216 0.92329 0.90793 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.72 10.76 55.49 0.60 -25.12 16 2 C 0.00 -0.08 5.40 -17.43 -0.09 -0.18 16 3 Si 0.91 21.22 29.56 -169.99 -5.02 16.19 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.23 -5.95 9.96 -15.06 -0.15 -6.10 16 8 H 0.08 1.89 7.84 -52.49 -0.41 1.47 16 9 N -0.59 -13.66 3.03 -161.14 -0.49 -14.15 16 10 C 0.17 3.97 5.38 -2.58 -0.01 3.95 16 11 C -0.14 -2.64 5.70 -24.74 -0.14 -2.78 16 12 C 0.16 2.46 0.75 -129.39 -0.10 2.37 16 13 N -0.70 -8.74 5.14 -45.36 -0.23 -8.97 16 14 C 0.52 5.99 6.36 -10.98 -0.07 5.92 16 15 O -0.53 -7.63 13.77 5.56 0.08 -7.55 16 16 C -0.12 -0.90 2.65 -91.52 -0.24 -1.15 16 17 C -0.14 -0.87 5.24 -27.79 -0.15 -1.01 16 18 C 0.53 4.39 7.75 -11.30 -0.09 4.30 16 19 O -0.50 -5.83 17.87 5.60 0.10 -5.73 16 20 N -0.68 -5.22 5.09 -11.74 -0.06 -5.28 16 21 C 0.53 4.68 7.74 -11.32 -0.09 4.59 16 22 O -0.50 -6.17 17.87 5.61 0.10 -6.07 16 23 C -0.12 -0.96 4.71 -27.81 -0.13 -1.09 16 24 C -0.11 -1.51 5.39 -25.17 -0.14 -1.65 16 25 C -0.12 -1.62 6.86 -24.54 -0.17 -1.79 16 26 C -0.13 -2.11 6.22 -24.88 -0.15 -2.26 16 27 C 0.16 2.92 3.67 -65.61 -0.24 2.68 16 28 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.03 0.65 8.02 -51.93 -0.42 0.23 16 31 H 0.06 1.66 7.09 -51.93 -0.37 1.29 16 32 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16 33 H 0.07 1.25 7.63 -51.93 -0.40 0.85 16 34 H 0.40 4.38 8.05 -40.82 -0.33 4.05 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.70 7.74 -51.93 -0.40 0.29 16 38 H 0.41 2.89 8.79 -40.82 -0.36 2.54 16 39 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.12 0.88 7.99 -51.93 -0.41 0.46 16 41 H 0.06 0.77 7.61 -51.93 -0.39 0.37 16 42 H 0.07 1.02 7.38 -51.93 -0.38 0.64 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -32.68 366.08 -8.09 -40.77 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.72 Total: 4.57 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.96 Total: 5.81 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.18 Total: -53.52 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.28 Total: -19.35 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.68 -8.09 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.232 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds