Wall clock time and date at job start Tue Mar 31 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00447 * 2 1 4 4 H 1.48507 * 109.47002 * 274.97586 * 3 2 1 5 5 H 1.48499 * 109.47101 * 34.97537 * 3 2 1 6 6 H 1.48494 * 109.47106 * 154.97759 * 3 2 1 7 7 C 1.38810 * 119.99387 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 187.85388 * 7 2 1 9 9 N 1.36939 * 120.00270 * 8.12496 * 7 2 1 10 10 C 1.47374 * 125.57973 * 13.52046 * 9 7 2 11 11 C 1.54864 * 104.82230 * 155.27880 * 10 9 7 12 12 C 1.54914 * 101.76527 * 37.07247 * 11 10 9 13 13 N 1.46497 * 112.33383 * 86.21226 * 12 11 10 14 14 C 1.34784 * 119.99877 * 61.01034 * 13 12 11 15 15 O 1.21276 * 119.99999 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99868 * 180.02562 * 14 13 12 17 17 C 1.53251 * 109.62103 * 299.63438 * 16 14 13 18 18 C 1.50628 * 109.14764 * 184.86951 * 17 16 14 19 19 O 1.21228 * 119.26654 * 208.91820 * 18 17 16 20 20 N 1.34143 * 121.37511 * 28.73154 * 18 17 16 21 21 C 1.34146 * 122.58692 * 359.63599 * 20 18 17 22 22 O 1.21222 * 119.36057 * 180.54172 * 21 20 18 23 23 C 1.50595 * 121.27646 * 0.56940 * 21 20 18 24 24 C 1.53582 * 109.09123 * 211.32796 * 12 11 10 25 25 C 1.55379 * 106.21666 * 112.46781 * 24 12 11 26 26 C 1.54756 * 104.40960 * 335.76988 * 25 24 12 27 27 C 1.46984 * 125.57932 * 193.21628 * 9 7 2 28 28 H 1.09003 * 111.81306 * 59.09537 * 27 9 7 29 29 H 0.97000 * 119.99447 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.37130 * 274.11681 * 10 9 7 31 31 H 1.09001 * 110.36165 * 36.44481 * 10 9 7 32 32 H 1.08998 * 110.97175 * 155.19338 * 11 10 9 33 33 H 1.09002 * 110.96716 * 278.95610 * 11 10 9 34 34 H 0.96995 * 120.00284 * 241.01798 * 13 12 11 35 35 H 1.08998 * 109.61803 * 60.00255 * 16 14 13 36 36 H 1.08995 * 109.51908 * 304.56719 * 17 16 14 37 37 H 1.08997 * 109.51827 * 64.75876 * 17 16 14 38 38 H 0.96993 * 118.70880 * 179.65930 * 20 18 17 39 39 H 1.09000 * 109.51863 * 210.97686 * 23 21 20 40 40 H 1.08999 * 109.52322 * 90.79071 * 23 21 20 41 41 H 1.09005 * 110.01845 * 232.38025 * 24 12 11 42 42 H 1.08999 * 110.02009 * 353.77085 * 24 12 11 43 43 H 1.08997 * 110.75847 * 216.82174 * 25 24 12 44 44 H 1.09000 * 110.08643 * 94.38301 * 25 24 12 45 45 H 1.09004 * 110.66988 * 278.91285 * 26 25 24 46 46 H 1.09002 * 110.66482 * 155.78527 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3927 2.1070 -1.3949 5 1 1.5044 2.6200 0.8026 6 1 3.5964 1.4119 0.5922 7 6 2.0101 -1.2022 0.0005 8 1 3.0826 -1.2066 0.1284 9 7 1.3357 -2.3822 -0.1665 10 6 -0.0565 -2.5158 -0.6312 11 6 -0.1346 -3.9352 -1.2457 12 6 0.7764 -4.7441 -0.2889 13 7 0.0515 -5.2400 0.8835 14 6 -0.9873 -6.0843 0.7261 15 8 -1.3215 -6.4339 -0.3860 16 6 -1.7334 -6.5940 1.9322 17 6 -0.7735 -7.3685 2.8418 18 6 -1.5521 -7.9737 3.9804 19 8 -1.0008 -8.1555 5.0447 20 7 -2.8427 -8.3120 3.8420 21 6 -3.5188 -8.1294 2.6979 22 8 -4.6872 -8.4474 2.6406 23 6 -2.8542 -7.5375 1.4830 24 6 1.4521 -5.8764 -1.0764 25 6 2.9660 -5.5295 -1.1224 26 6 3.0150 -3.9937 -0.9389 27 6 1.8838 -3.7232 0.0822 28 1 2.2137 -3.8408 1.1144 29 1 -0.4849 0.8401 0.0004 30 1 -0.7467 -2.4270 0.2077 31 1 -0.2780 -1.7624 -1.3871 32 1 -1.1565 -4.3138 -1.2243 33 1 0.2616 -3.9429 -2.2611 34 1 0.3189 -4.9607 1.7731 35 1 -2.1598 -5.7541 2.4806 36 1 -0.2919 -8.1624 2.2711 37 1 -0.0164 -6.6897 3.2343 38 1 -3.3055 -8.7036 4.5992 39 1 -3.5885 -6.9800 0.9015 40 1 -2.4347 -8.3365 0.8717 41 1 1.2895 -6.8296 -0.5732 42 1 1.0527 -5.9161 -2.0898 43 1 3.3983 -5.8132 -2.0819 44 1 3.4893 -6.0283 -0.3067 45 1 2.8113 -3.4868 -1.8821 46 1 3.9794 -3.6850 -0.5355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:18 Heat of formation + Delta-G solvation = -110.999808 kcal Electronic energy + Delta-G solvation = -30230.860849 eV Core-core repulsion = 26119.593803 eV Total energy + Delta-G solvation = -4111.267047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65233 -41.48354 -39.96160 -39.63862 -36.54437 -35.94958 -34.98011 -34.50244 -33.29755 -31.40435 -29.85497 -28.34417 -27.80857 -25.87147 -25.62700 -24.24461 -22.64837 -21.54336 -20.93871 -20.32798 -20.17227 -18.88210 -18.80545 -18.36409 -18.14911 -17.17932 -16.87131 -16.81789 -16.35596 -15.86699 -15.77014 -15.61488 -15.45986 -15.18273 -14.92354 -14.68166 -14.53371 -14.29082 -13.81076 -13.51164 -13.40792 -13.16053 -12.91066 -12.78695 -12.58801 -12.47760 -12.28986 -12.24158 -12.01583 -11.91687 -11.83165 -11.64962 -11.63331 -11.42679 -11.39706 -11.34302 -11.17666 -10.66237 -10.60192 -9.89493 -8.77116 -7.83740 -5.18784 0.40111 1.48145 1.49406 1.57671 1.59653 1.67062 1.73120 2.16395 2.52402 2.89586 3.31180 3.36043 3.39855 3.50017 3.60738 3.69543 3.95924 4.01777 4.03768 4.12775 4.41333 4.43949 4.47119 4.52565 4.57086 4.66068 4.72015 4.78758 4.88131 4.88486 4.96007 5.00025 5.04109 5.17173 5.22888 5.30311 5.39444 5.51122 5.60801 5.66663 5.72251 5.74923 5.80692 6.25109 6.27881 6.62594 6.74511 7.12597 7.28964 7.82153 8.48571 9.27873 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003189 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.217398 B = 8778.434170 C = 9300.564859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.187 3.813 11 C -0.131 4.131 12 C 0.172 3.828 13 N -0.699 5.699 14 C 0.527 3.473 15 O -0.555 6.555 16 C -0.102 4.102 17 C -0.128 4.128 18 C 0.541 3.459 19 O -0.532 6.532 20 N -0.671 5.671 21 C 0.541 3.459 22 O -0.536 6.536 23 C -0.116 4.116 24 C -0.103 4.103 25 C -0.110 4.110 26 C -0.127 4.127 27 C 0.153 3.847 28 H 0.058 0.942 29 H 0.245 0.755 30 H -0.002 1.002 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.411 0.589 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.416 0.584 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -18.144 3.785 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.061 3.939 11 C -0.171 4.171 12 C 0.085 3.915 13 N -0.349 5.349 14 C 0.314 3.686 15 O -0.433 6.433 16 C -0.124 4.124 17 C -0.167 4.167 18 C 0.331 3.669 19 O -0.406 6.406 20 N -0.335 5.335 21 C 0.331 3.669 22 O -0.410 6.410 23 C -0.156 4.156 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.167 4.167 27 C 0.047 3.953 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.256 0.744 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.276 -18.328 3.365 18.637 hybrid contribution -0.234 1.590 0.714 1.758 sum 0.042 -16.739 4.079 17.228 Atomic orbital electron populations 1.70147 1.06349 1.25133 1.58026 1.25584 0.96282 1.00844 1.02822 0.85204 0.78119 0.79921 0.76983 1.22010 1.22613 1.18979 1.19321 0.91203 0.83704 1.41572 0.90139 1.44675 1.10932 1.00906 1.77023 1.21054 0.85617 0.92466 0.94718 1.23157 0.99975 0.95785 0.98171 1.21429 0.91139 0.93082 0.85848 1.45844 1.32465 1.46740 1.09866 1.20317 0.79640 0.78312 0.90355 1.90728 1.66568 1.58983 1.27022 1.21431 0.95611 1.00302 0.95067 1.22026 0.98077 1.02969 0.93656 1.21042 0.80831 0.75301 0.89738 1.90822 1.68286 1.52133 1.29365 1.44849 1.13336 1.58705 1.16607 1.21075 0.85912 0.75535 0.84368 1.90803 1.17636 1.48940 1.83655 1.21740 0.98530 1.01171 0.94172 1.22411 0.95171 0.96892 0.99710 1.22490 0.95304 0.94324 1.02722 1.22788 0.98507 0.96441 0.98949 1.22065 0.92362 0.83878 0.97038 0.92446 0.94630 0.98354 0.96143 0.91170 0.91602 0.75296 0.85749 0.84071 0.84495 0.74443 0.86460 0.84674 0.90278 0.91913 0.90633 0.89927 0.93306 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.38 10.76 21.65 0.23 -55.15 16 2 C -0.06 -3.37 5.40 84.86 0.46 -2.91 16 3 Si 0.97 44.32 29.56 68.60 2.03 46.35 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.23 -11.91 9.96 84.03 0.84 -11.08 16 8 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 9 N -0.61 -28.37 3.03 -663.73 -2.01 -30.38 16 10 C 0.19 8.78 5.38 86.85 0.47 9.25 16 11 C -0.13 -4.80 5.70 31.89 0.18 -4.62 16 12 C 0.17 4.99 0.75 5.18 0.00 5.00 16 13 N -0.70 -15.75 5.14 -415.82 -2.14 -17.89 16 14 C 0.53 10.74 6.36 87.66 0.56 11.30 16 15 O -0.56 -14.77 13.77 -3.02 -0.04 -14.81 16 16 C -0.10 -1.31 2.65 -11.38 -0.03 -1.34 16 17 C -0.13 -1.19 5.24 29.91 0.16 -1.03 16 18 C 0.54 7.62 7.75 87.73 0.68 8.30 16 19 O -0.53 -11.37 17.87 -2.87 -0.05 -11.42 16 20 N -0.67 -9.15 5.09 -428.58 -2.18 -11.34 16 21 C 0.54 8.73 7.74 87.72 0.68 9.41 16 22 O -0.54 -12.82 17.87 -2.85 -0.05 -12.88 16 23 C -0.12 -1.58 4.71 29.90 0.14 -1.44 16 24 C -0.10 -2.49 5.39 31.61 0.17 -2.32 16 25 C -0.11 -2.45 6.86 32.01 0.22 -2.23 16 26 C -0.13 -3.88 6.22 31.80 0.20 -3.68 16 27 C 0.15 5.28 3.67 46.23 0.17 5.45 16 28 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 29 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.00 -0.08 8.02 -2.39 -0.02 -0.10 16 31 H 0.02 1.11 7.09 -2.39 -0.02 1.09 16 32 H 0.07 2.57 6.53 -2.39 -0.02 2.55 16 33 H 0.07 2.42 7.63 -2.39 -0.02 2.40 16 34 H 0.41 7.81 8.05 -92.71 -0.75 7.07 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.14 1.01 7.74 -2.39 -0.02 0.99 16 38 H 0.42 5.31 8.79 -92.71 -0.81 4.50 16 39 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.14 1.56 7.99 -2.39 -0.02 1.54 16 41 H 0.08 1.66 7.61 -2.38 -0.02 1.64 16 42 H 0.06 1.65 7.38 -2.39 -0.02 1.63 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.73 8.09 -2.38 -0.02 1.72 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.18 366.08 0.15 -73.03 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.53 Total: 16.46 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 4.89 Total: 18.03 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -6.10 Total: -114.76 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.14 Total: -39.11 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.18 0.15 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.969 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds