Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48499 * 109.47208 * 269.99847 * 3 2 1 5 5 H 1.48507 * 109.47058 * 29.99735 * 3 2 1 6 6 H 1.48503 * 109.47489 * 149.99613 * 3 2 1 7 7 C 1.38812 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.49290 * 127.10259 * 0.02562 * 9 7 2 11 11 C 1.56235 * 106.51040 * 188.64301 * 10 9 7 12 12 C 1.52130 * 100.80476 * 23.45152 * 11 10 9 13 13 N 1.46500 * 111.09123 * 73.95725 * 12 11 10 14 14 C 1.34773 * 119.99534 * 71.69831 * 13 12 11 15 15 O 1.21284 * 120.00547 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99620 * 180.02562 * 14 13 12 17 17 C 1.53232 * 109.62267 * 299.07315 * 16 14 13 18 18 C 1.50584 * 109.17338 * 184.68089 * 17 16 14 19 19 O 1.21227 * 119.36438 * 209.07692 * 18 17 16 20 20 N 1.34138 * 121.28142 * 29.07292 * 18 17 16 21 21 C 1.34148 * 122.58536 * 359.45612 * 20 18 17 22 22 O 1.21222 * 119.35986 * 180.54129 * 21 20 18 23 23 C 1.50585 * 121.27936 * 0.56886 * 21 20 18 24 24 C 1.51233 * 122.11447 * 208.79490 * 12 11 10 25 25 C 1.55753 * 104.60792 * 141.29646 * 24 12 11 26 26 C 1.56281 * 105.90950 * 352.70440 * 25 24 12 27 27 C 1.42702 * 127.10204 * 179.97438 * 9 7 2 28 28 H 1.09006 * 108.17284 * 255.88473 * 27 9 7 29 29 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.04984 * 307.90708 * 10 9 7 31 31 H 1.09004 * 110.04947 * 69.32667 * 10 9 7 32 32 H 1.08996 * 111.14579 * 141.33494 * 11 10 9 33 33 H 1.09000 * 111.14653 * 265.56460 * 11 10 9 34 34 H 0.97000 * 120.00156 * 251.69100 * 13 12 11 35 35 H 1.08997 * 109.61806 * 59.63317 * 16 14 13 36 36 H 1.09007 * 109.52399 * 304.56694 * 17 16 14 37 37 H 1.09001 * 109.52251 * 64.75628 * 17 16 14 38 38 H 0.96994 * 118.71064 * 179.43911 * 20 18 17 39 39 H 1.08996 * 109.52473 * 210.97176 * 23 21 20 40 40 H 1.09002 * 109.57499 * 90.81884 * 23 21 20 41 41 H 1.09001 * 110.40808 * 260.04757 * 24 12 11 42 42 H 1.08996 * 110.40556 * 22.36370 * 24 12 11 43 43 H 1.08998 * 110.15385 * 233.60143 * 25 24 12 44 44 H 1.09012 * 110.19242 * 111.82241 * 25 24 12 45 45 H 1.09002 * 110.97179 * 217.64627 * 26 25 24 46 46 H 1.09003 * 110.97289 * 93.91881 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1560 -2.5727 -0.0005 11 6 -0.4137 -4.0970 0.2251 12 6 0.8797 -4.5060 0.9138 13 7 0.9137 -4.0279 2.2982 14 6 0.1214 -4.5980 3.2276 15 8 -0.6200 -5.5064 2.9178 16 6 0.1560 -4.1057 4.6516 17 6 1.5633 -4.2950 5.2274 18 6 1.5584 -3.9080 6.6827 19 8 2.5728 -3.4754 7.1862 20 7 0.4534 -4.0327 7.4328 21 6 -0.7061 -4.4935 6.9401 22 8 -1.6718 -4.5729 7.6685 23 6 -0.8312 -4.9147 5.4997 24 6 1.4456 -5.9036 0.7970 25 6 2.9856 -5.6961 0.6902 26 6 3.2022 -4.1536 0.5632 27 6 1.8807 -3.7027 0.0005 28 1 1.7803 -4.1141 -1.0039 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6052 -1.9943 0.8067 31 1 -0.5708 -2.2606 -0.9590 32 1 -1.2735 -4.2585 0.8751 33 1 -0.5364 -4.6197 -0.7235 34 1 1.5065 -3.3012 2.5459 35 1 -0.1156 -3.0505 4.6807 36 1 1.8595 -5.3395 5.1297 37 1 2.2669 -3.6636 4.6848 38 1 0.4943 -3.7799 8.3683 39 1 -1.8475 -4.7284 5.1527 40 1 -0.6043 -5.9769 5.4088 41 1 1.2019 -6.4878 1.6844 42 1 1.0631 -6.3950 -0.0975 43 1 3.3726 -6.2038 -0.1933 44 1 3.4790 -6.0722 1.5866 45 1 4.0162 -3.9294 -0.1262 46 1 3.3851 -3.7036 1.5390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992333464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = -72.795532 kcal Electronic energy + Delta-G solvation = -30801.890713 eV Core-core repulsion = 26692.280328 eV Total energy + Delta-G solvation = -4109.610385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80633 -40.56428 -39.06579 -38.51031 -35.60670 -34.52992 -34.02969 -33.13334 -31.76621 -29.97452 -29.05515 -27.03518 -26.20414 -25.00309 -24.10632 -23.44032 -20.95382 -20.53442 -19.70999 -19.58147 -18.88324 -18.03991 -17.49359 -17.19824 -16.56953 -16.03747 -15.87992 -15.39401 -15.04254 -14.77441 -14.71088 -14.54391 -14.42243 -14.01832 -13.94570 -13.65834 -13.30418 -12.71325 -12.60363 -12.42744 -12.00819 -11.72596 -11.60968 -11.51412 -11.40537 -11.08838 -11.02631 -11.00480 -10.88016 -10.59701 -10.52886 -10.46555 -10.36932 -10.12258 -10.05376 -9.79011 -9.67664 -9.25897 -8.75886 -8.63642 -6.96797 -5.84288 -3.19492 1.21838 2.44341 2.50203 2.73528 3.31649 3.32390 3.38020 3.39797 3.68002 4.13867 4.29535 4.36499 4.43893 4.53180 4.69364 5.00655 5.05606 5.13500 5.16867 5.28498 5.38582 5.49499 5.50692 5.60953 5.63238 5.72225 5.73429 5.85003 5.88721 6.05514 6.15318 6.20772 6.28222 6.32951 6.40635 6.53243 6.55262 6.72168 6.79539 7.03440 7.06550 7.42345 7.50314 7.53022 7.68069 7.83969 8.09722 8.44893 9.03666 9.70246 10.38271 11.27670 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.004263 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.094770 B = 6566.374290 C = 7550.490782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.177 3.823 11 C -0.138 4.138 12 C 0.129 3.871 13 N -0.683 5.683 14 C 0.523 3.477 15 O -0.540 6.540 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.531 3.469 19 O -0.499 6.499 20 N -0.677 5.677 21 C 0.528 3.472 22 O -0.502 6.502 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.115 4.115 27 C 0.159 3.841 28 H 0.022 0.978 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.412 0.588 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -11.514 7.991 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.177 4.177 12 C 0.042 3.958 13 N -0.333 5.333 14 C 0.307 3.693 15 O -0.418 6.418 16 C -0.138 4.138 17 C -0.175 4.175 18 C 0.319 3.681 19 O -0.371 6.371 20 N -0.342 5.342 21 C 0.317 3.683 22 O -0.374 6.374 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.153 4.153 27 C 0.048 3.952 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.251 0.749 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.039 -11.747 8.144 14.439 hybrid contribution 0.699 1.544 0.424 1.747 sum 2.738 -10.203 8.569 13.602 Atomic orbital electron populations 1.69907 1.04923 1.25272 1.56314 1.24783 0.95601 0.97654 1.01855 0.86187 0.78658 0.83621 0.77672 1.21573 1.21712 1.20621 1.19006 0.90287 0.82207 1.44677 0.90258 1.43675 1.01698 0.99227 1.86137 1.22023 0.83186 0.88589 1.00846 1.22789 0.96301 0.99482 0.99178 1.21581 0.98816 0.94115 0.81330 1.45709 1.41947 1.37239 1.08401 1.19845 0.80567 0.82875 0.86011 1.90696 1.39750 1.29882 1.81499 1.21537 0.94774 1.03285 0.94203 1.21958 0.98338 1.06375 0.90800 1.20818 0.82063 0.75730 0.89444 1.90813 1.31520 1.41021 1.73763 1.44901 1.12110 1.61057 1.16146 1.21029 0.81385 0.74653 0.91196 1.90795 1.36392 1.49899 1.60307 1.21758 1.03407 1.02989 0.87884 1.21868 0.94824 0.95956 1.02287 1.22838 0.95717 0.95908 1.01069 1.21843 0.97863 0.94487 1.01121 1.20856 0.91600 0.87378 0.95320 0.96042 0.93608 0.91680 0.94685 0.91338 0.91628 0.75917 0.86721 0.86358 0.85910 0.74884 0.85870 0.86066 0.91225 0.91101 0.91946 0.92196 0.91744 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.11 10.55 55.49 0.59 -24.52 16 2 C 0.00 -0.05 5.49 -17.43 -0.10 -0.15 16 3 Si 0.91 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.23 -5.82 10.29 -15.06 -0.15 -5.98 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.58 -13.02 3.12 -162.64 -0.51 -13.53 16 10 C 0.18 3.92 5.33 -0.76 0.00 3.92 16 11 C -0.14 -2.48 6.19 -25.44 -0.16 -2.64 16 12 C 0.13 2.04 0.40 -130.68 -0.05 1.99 16 13 N -0.68 -9.74 4.31 -46.55 -0.20 -9.94 16 14 C 0.52 6.79 6.48 -10.98 -0.07 6.72 16 15 O -0.54 -8.37 14.10 5.55 0.08 -8.29 16 16 C -0.12 -1.12 2.66 -91.52 -0.24 -1.36 16 17 C -0.13 -1.11 5.24 -27.82 -0.15 -1.26 16 18 C 0.53 5.22 7.74 -11.33 -0.09 5.14 16 19 O -0.50 -6.58 17.88 5.60 0.10 -6.48 16 20 N -0.68 -6.13 5.09 -11.75 -0.06 -6.19 16 21 C 0.53 5.34 7.74 -11.32 -0.09 5.26 16 22 O -0.50 -6.72 17.87 5.61 0.10 -6.62 16 23 C -0.12 -1.11 4.70 -27.81 -0.13 -1.24 16 24 C -0.11 -1.50 6.04 -26.15 -0.16 -1.65 16 25 C -0.12 -1.42 6.94 -23.50 -0.16 -1.58 16 26 C -0.11 -1.68 6.46 -26.20 -0.17 -1.85 16 27 C 0.16 2.85 2.64 -68.69 -0.18 2.67 16 28 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.06 1.61 7.05 -51.93 -0.37 1.24 16 31 H 0.03 0.87 7.98 -51.93 -0.41 0.45 16 32 H 0.07 1.25 7.17 -51.93 -0.37 0.88 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 5.84 7.39 -40.82 -0.30 5.54 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.12 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.12 1.00 7.77 -51.93 -0.40 0.59 16 38 H 0.41 3.39 8.79 -40.82 -0.36 3.04 16 39 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.12 1.01 7.98 -51.93 -0.41 0.59 16 41 H 0.07 0.95 6.86 -51.93 -0.36 0.60 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -31.25 365.74 -8.03 -39.28 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.71 Total: 7.03 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.90 Total: 8.00 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.18 Total: -54.18 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.28 Total: -21.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.25 -8.03 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.512 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds