Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48499 * 109.47208 * 269.99847 * 3 2 1 5 5 H 1.48507 * 109.47058 * 29.99735 * 3 2 1 6 6 H 1.48503 * 109.47489 * 149.99613 * 3 2 1 7 7 C 1.38812 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.49290 * 127.10259 * 0.02562 * 9 7 2 11 11 C 1.56235 * 106.51040 * 188.64301 * 10 9 7 12 12 C 1.52130 * 100.80476 * 23.45152 * 11 10 9 13 13 N 1.46500 * 111.09123 * 73.95725 * 12 11 10 14 14 C 1.34773 * 119.99534 * 71.69831 * 13 12 11 15 15 O 1.21284 * 120.00547 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99620 * 180.02562 * 14 13 12 17 17 C 1.53232 * 109.62267 * 299.07315 * 16 14 13 18 18 C 1.50584 * 109.17338 * 184.68089 * 17 16 14 19 19 O 1.21227 * 119.36438 * 209.07692 * 18 17 16 20 20 N 1.34138 * 121.28142 * 29.07292 * 18 17 16 21 21 C 1.34148 * 122.58536 * 359.45612 * 20 18 17 22 22 O 1.21222 * 119.35986 * 180.54129 * 21 20 18 23 23 C 1.50585 * 121.27936 * 0.56886 * 21 20 18 24 24 C 1.51233 * 122.11447 * 208.79490 * 12 11 10 25 25 C 1.55753 * 104.60792 * 141.29646 * 24 12 11 26 26 C 1.56281 * 105.90950 * 352.70440 * 25 24 12 27 27 C 1.42702 * 127.10204 * 179.97438 * 9 7 2 28 28 H 1.09006 * 108.17284 * 255.88473 * 27 9 7 29 29 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.04984 * 307.90708 * 10 9 7 31 31 H 1.09004 * 110.04947 * 69.32667 * 10 9 7 32 32 H 1.08996 * 111.14579 * 141.33494 * 11 10 9 33 33 H 1.09000 * 111.14653 * 265.56460 * 11 10 9 34 34 H 0.97000 * 120.00156 * 251.69100 * 13 12 11 35 35 H 1.08997 * 109.61806 * 59.63317 * 16 14 13 36 36 H 1.09007 * 109.52399 * 304.56694 * 17 16 14 37 37 H 1.09001 * 109.52251 * 64.75628 * 17 16 14 38 38 H 0.96994 * 118.71064 * 179.43911 * 20 18 17 39 39 H 1.08996 * 109.52473 * 210.97176 * 23 21 20 40 40 H 1.09002 * 109.57499 * 90.81884 * 23 21 20 41 41 H 1.09001 * 110.40808 * 260.04757 * 24 12 11 42 42 H 1.08996 * 110.40556 * 22.36370 * 24 12 11 43 43 H 1.08998 * 110.15385 * 233.60143 * 25 24 12 44 44 H 1.09012 * 110.19242 * 111.82241 * 25 24 12 45 45 H 1.09002 * 110.97179 * 217.64627 * 26 25 24 46 46 H 1.09003 * 110.97289 * 93.91881 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1560 -2.5727 -0.0005 11 6 -0.4137 -4.0970 0.2251 12 6 0.8797 -4.5060 0.9138 13 7 0.9137 -4.0279 2.2982 14 6 0.1214 -4.5980 3.2276 15 8 -0.6200 -5.5064 2.9178 16 6 0.1560 -4.1057 4.6516 17 6 1.5633 -4.2950 5.2274 18 6 1.5584 -3.9080 6.6827 19 8 2.5728 -3.4754 7.1862 20 7 0.4534 -4.0327 7.4328 21 6 -0.7061 -4.4935 6.9401 22 8 -1.6718 -4.5729 7.6685 23 6 -0.8312 -4.9147 5.4997 24 6 1.4456 -5.9036 0.7970 25 6 2.9856 -5.6961 0.6902 26 6 3.2022 -4.1536 0.5632 27 6 1.8807 -3.7027 0.0005 28 1 1.7803 -4.1141 -1.0039 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6052 -1.9943 0.8067 31 1 -0.5708 -2.2606 -0.9590 32 1 -1.2735 -4.2585 0.8751 33 1 -0.5364 -4.6197 -0.7235 34 1 1.5065 -3.3012 2.5459 35 1 -0.1156 -3.0505 4.6807 36 1 1.8595 -5.3395 5.1297 37 1 2.2669 -3.6636 4.6848 38 1 0.4943 -3.7799 8.3683 39 1 -1.8475 -4.7284 5.1527 40 1 -0.6043 -5.9769 5.4088 41 1 1.2019 -6.4878 1.6844 42 1 1.0631 -6.3950 -0.0975 43 1 3.3726 -6.2038 -0.1933 44 1 3.4790 -6.0722 1.5866 45 1 4.0162 -3.9294 -0.1262 46 1 3.3851 -3.7036 1.5390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = -94.933099 kcal Electronic energy + Delta-G solvation = -30802.850670 eV Core-core repulsion = 26692.280328 eV Total energy + Delta-G solvation = -4110.570342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.68201 -41.80601 -39.97392 -39.69195 -36.54263 -36.10500 -34.91272 -34.29740 -33.46901 -31.49907 -29.85067 -28.48598 -27.46670 -26.10933 -25.77207 -24.25981 -22.28586 -21.76914 -21.16089 -20.36955 -20.07906 -18.90533 -18.45966 -18.26187 -18.13963 -17.32033 -16.94838 -16.41595 -16.36261 -15.95317 -15.78562 -15.66356 -15.54098 -15.42307 -15.15819 -14.74525 -14.36749 -14.08312 -14.00130 -13.46024 -13.43399 -12.99510 -12.94380 -12.80694 -12.61401 -12.48552 -12.28207 -12.12023 -12.07184 -12.00447 -11.89012 -11.75414 -11.50054 -11.41174 -11.38015 -11.27152 -10.96738 -10.70128 -10.50349 -9.84629 -8.83144 -7.81635 -5.16279 0.38444 1.49305 1.50886 1.58118 1.61827 1.69121 1.72843 2.26684 2.52457 2.89086 3.15324 3.33673 3.39280 3.46329 3.60250 3.80149 3.94209 3.97309 4.12641 4.17804 4.36762 4.40163 4.47546 4.49537 4.55825 4.66145 4.70420 4.77541 4.87099 4.88036 4.98410 5.02287 5.06431 5.14506 5.20086 5.32046 5.36422 5.55105 5.61498 5.65941 5.73012 5.73489 5.85839 6.21906 6.25669 6.70848 6.73453 7.08426 7.34642 7.81102 8.52792 9.29894 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.004263 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.094770 B = 6566.374290 C = 7550.490782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.059 4.059 3 Si 0.966 3.034 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.265 1.265 7 C -0.227 4.227 8 H 0.088 0.912 9 N -0.597 5.597 10 C 0.188 3.812 11 C -0.127 4.127 12 C 0.141 3.859 13 N -0.686 5.686 14 C 0.527 3.473 15 O -0.562 6.562 16 C -0.105 4.105 17 C -0.127 4.127 18 C 0.541 3.459 19 O -0.531 6.531 20 N -0.670 5.670 21 C 0.541 3.459 22 O -0.535 6.535 23 C -0.114 4.114 24 C -0.105 4.105 25 C -0.103 4.103 26 C -0.111 4.111 27 C 0.144 3.856 28 H 0.012 0.988 29 H 0.244 0.756 30 H 0.033 0.967 31 H -0.005 1.005 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.416 0.584 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -13.378 8.738 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.252 4.252 3 Si 0.796 3.204 4 H -0.222 1.222 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.356 4.356 8 H 0.106 0.894 9 N -0.320 5.320 10 C 0.064 3.936 11 C -0.166 4.166 12 C 0.053 3.947 13 N -0.336 5.336 14 C 0.313 3.687 15 O -0.441 6.441 16 C -0.126 4.126 17 C -0.167 4.167 18 C 0.331 3.669 19 O -0.405 6.405 20 N -0.334 5.334 21 C 0.331 3.669 22 O -0.409 6.409 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.149 4.149 27 C 0.035 3.965 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.147 0.853 38 H 0.256 0.744 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.044 -13.647 8.898 16.786 hybrid contribution 0.058 2.099 0.132 2.104 sum 4.102 -11.549 9.030 15.223 Atomic orbital electron populations 1.70113 1.06252 1.25017 1.58496 1.25465 0.96227 1.00497 1.03010 0.85261 0.78007 0.80087 0.77075 1.22177 1.22858 1.18936 1.19368 0.90849 0.83145 1.42244 0.89392 1.43779 1.01885 1.00381 1.85929 1.21705 0.83328 0.91095 0.97471 1.22632 0.97634 0.96350 1.00033 1.21460 0.96170 0.95349 0.81689 1.45724 1.42469 1.37465 1.07972 1.20215 0.79501 0.82153 0.86814 1.90694 1.40365 1.30910 1.82115 1.21415 0.95980 1.03178 0.92058 1.21982 0.97266 1.08102 0.89326 1.21004 0.81417 0.74614 0.89846 1.90815 1.32640 1.42624 1.74461 1.44832 1.11738 1.60391 1.16480 1.21075 0.80935 0.73681 0.91189 1.90794 1.37518 1.51463 1.61156 1.21723 1.02971 1.03782 0.86904 1.21860 0.95787 0.93941 1.02798 1.22773 0.94531 0.93747 1.03056 1.21865 0.95643 0.96364 1.01038 1.21077 0.94627 0.85197 0.95568 0.97090 0.94668 0.94837 0.98660 0.91720 0.90702 0.75899 0.86675 0.83819 0.85264 0.74410 0.86495 0.84480 0.90675 0.90660 0.90448 0.89752 0.91644 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.96 10.55 21.65 0.23 -53.73 16 2 C -0.06 -3.09 5.49 84.86 0.47 -2.62 16 3 Si 0.97 43.14 29.55 68.60 2.03 45.17 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.23 -11.31 10.29 84.03 0.86 -10.44 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.60 -26.75 3.12 -668.47 -2.08 -28.84 16 10 C 0.19 8.65 5.33 86.96 0.46 9.11 16 11 C -0.13 -4.56 6.19 31.43 0.19 -4.36 16 12 C 0.14 4.23 0.40 4.34 0.00 4.23 16 13 N -0.69 -18.31 4.31 -419.59 -1.81 -20.12 16 14 C 0.53 12.59 6.48 87.66 0.57 13.15 16 15 O -0.56 -16.18 14.10 -3.04 -0.04 -16.23 16 16 C -0.10 -1.79 2.66 -11.38 -0.03 -1.82 16 17 C -0.13 -1.71 5.24 29.89 0.16 -1.56 16 18 C 0.54 9.48 7.74 87.72 0.68 10.16 16 19 O -0.53 -13.08 17.88 -2.87 -0.05 -13.13 16 20 N -0.67 -11.03 5.09 -428.64 -2.18 -13.21 16 21 C 0.54 10.11 7.74 87.72 0.68 10.79 16 22 O -0.53 -13.86 17.87 -2.85 -0.05 -13.91 16 23 C -0.11 -1.87 4.70 29.89 0.14 -1.73 16 24 C -0.11 -2.49 6.04 30.97 0.19 -2.31 16 25 C -0.10 -2.05 6.94 32.69 0.23 -1.83 16 26 C -0.11 -2.91 6.46 30.94 0.20 -2.71 16 27 C 0.14 5.00 2.64 46.49 0.12 5.12 16 28 H 0.01 0.43 7.94 -2.38 -0.02 0.41 16 29 H 0.24 13.77 8.31 -92.71 -0.77 12.99 16 30 H 0.03 1.73 7.05 -2.39 -0.02 1.71 16 31 H 0.00 -0.26 7.98 -2.38 -0.02 -0.28 16 32 H 0.06 2.36 7.17 -2.39 -0.02 2.34 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.40 10.96 7.39 -92.71 -0.69 10.27 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.13 1.69 7.77 -2.39 -0.02 1.67 16 38 H 0.42 6.34 8.79 -92.71 -0.81 5.52 16 39 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.14 1.88 7.98 -2.39 -0.02 1.86 16 41 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.34 8.14 -2.38 -0.02 1.33 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 1.80 7.38 -2.39 -0.02 1.78 16 Total: -1.00 -69.17 365.74 0.48 -68.68 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.47 Total: 22.13 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 4.92 Total: 23.17 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -5.85 Total: -115.89 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.15 Total: -43.26 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.17 0.48 -68.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal (2) G-P(sol) polarization free energy of solvation -69.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds