Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 119.99928 * 2 1 4 4 H 1.48505 * 109.47084 * 269.99979 * 3 2 1 5 5 H 1.48502 * 109.47585 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.58226 * 359.97188 * 9 7 2 11 11 C 1.54869 * 104.81881 * 204.69726 * 10 9 7 12 12 C 1.54908 * 101.76663 * 322.92356 * 11 10 9 13 13 N 1.46499 * 112.33278 * 273.78686 * 12 11 10 14 14 C 1.34772 * 119.99706 * 298.98511 * 13 12 11 15 15 O 1.21279 * 120.00663 * 0.02562 * 14 13 12 16 16 C 1.50710 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.53239 * 109.62084 * 179.97438 * 16 14 13 18 18 C 1.50590 * 109.15820 * 184.66137 * 17 16 14 19 19 O 1.21233 * 119.35608 * 209.07180 * 18 17 16 20 20 N 1.34138 * 121.28145 * 29.35424 * 18 17 16 21 21 C 1.34148 * 122.58404 * 358.91936 * 20 18 17 22 22 O 1.21220 * 119.36154 * 180.80336 * 21 20 18 23 23 C 1.50589 * 121.27454 * 1.07941 * 21 20 18 24 24 C 1.53584 * 109.09536 * 148.66849 * 12 11 10 25 25 C 1.55455 * 106.06021 * 247.00559 * 24 12 11 26 26 C 1.54759 * 104.36633 * 24.63882 * 25 24 12 27 27 C 1.46982 * 125.57796 * 179.97438 * 9 7 2 28 28 H 1.09008 * 111.81272 * 300.92796 * 27 9 7 29 29 H 0.97000 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.08992 * 110.36916 * 85.85843 * 10 9 7 31 31 H 1.09006 * 110.46093 * 323.57617 * 10 9 7 32 32 H 1.09001 * 110.96595 * 204.80184 * 11 10 9 33 33 H 1.09001 * 110.99697 * 81.05866 * 11 10 9 34 34 H 0.96999 * 120.00564 * 118.99237 * 13 12 11 35 35 H 1.08999 * 109.61513 * 300.37081 * 16 14 13 36 36 H 1.09003 * 109.52192 * 64.75642 * 17 16 14 37 37 H 1.08998 * 109.57757 * 304.60086 * 17 16 14 38 38 H 0.97001 * 118.70905 * 179.17785 * 20 18 17 39 39 H 1.09002 * 109.52021 * 210.74466 * 23 21 20 40 40 H 1.09001 * 109.57645 * 90.58810 * 23 21 20 41 41 H 1.09006 * 110.01192 * 5.64138 * 24 12 11 42 42 H 1.09002 * 110.01932 * 127.02474 * 24 12 11 43 43 H 1.09000 * 110.28476 * 265.95326 * 25 24 12 44 44 H 1.09002 * 110.62437 * 143.48861 * 25 24 12 45 45 H 1.09001 * 110.66666 * 203.88851 * 26 25 24 46 46 H 1.08999 * 110.66808 * 80.75427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1413 -2.5313 0.0006 11 6 -0.4032 -3.9237 0.6261 12 6 0.7720 -4.7539 0.0523 13 7 0.4649 -5.3168 -1.2649 14 6 -0.5638 -6.1758 -1.4075 15 8 -1.2355 -6.4825 -0.4455 16 6 -0.8793 -6.7553 -2.7624 17 6 -2.0843 -7.6956 -2.6520 18 6 -2.3196 -8.3561 -3.9847 19 8 -3.4434 -8.6915 -4.2916 20 7 -1.3090 -8.5855 -4.8364 21 6 -0.0440 -8.2274 -4.5697 22 8 0.8219 -8.4502 -5.3881 23 6 0.3221 -7.5595 -3.2706 24 6 1.1666 -5.8353 1.0690 25 6 2.5896 -5.4576 1.5681 26 6 2.6841 -3.9301 1.3384 27 6 1.9331 -3.7264 0.0005 28 1 2.5742 -3.8802 -0.8676 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5260 -2.4948 -1.0185 31 1 -0.6004 -1.7505 0.6070 32 1 -1.3617 -4.3250 0.2970 33 1 -0.3543 -3.8785 1.7141 34 1 1.0019 -5.0713 -2.0345 35 1 -1.1058 -5.9500 -3.4611 36 1 -2.9677 -7.1237 -2.3678 37 1 -1.8854 -8.4571 -1.8980 38 1 -1.5010 -9.0243 -5.6799 39 1 1.1671 -6.8898 -3.4308 40 1 0.5917 -8.3164 -2.5340 41 1 0.4693 -5.8320 1.9068 42 1 1.1701 -6.8144 0.5899 43 1 3.3464 -5.9792 0.9821 44 1 2.6999 -5.6918 2.6269 45 1 3.7246 -3.6185 1.2469 46 1 2.1886 -3.3885 2.1442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992333473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -83.781672 kcal Electronic energy + Delta-G solvation = -30222.648184 eV Core-core repulsion = 26112.561404 eV Total energy + Delta-G solvation = -4110.086780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92016 -40.32207 -39.18020 -38.43700 -35.73875 -34.34357 -34.17935 -33.46429 -31.47502 -29.87938 -29.18775 -26.78200 -26.55807 -24.90885 -23.89165 -23.55494 -21.34514 -20.06944 -19.82945 -19.56236 -18.98985 -18.14501 -17.61213 -17.24918 -17.06605 -16.17846 -15.84356 -15.51269 -15.05207 -14.94836 -14.75296 -14.66950 -14.34604 -13.92917 -13.79923 -13.55316 -13.20163 -12.89439 -12.73192 -12.24729 -11.95966 -11.87585 -11.78751 -11.63343 -11.28170 -11.10187 -11.05001 -10.88309 -10.74754 -10.63999 -10.62675 -10.57752 -10.23145 -10.15661 -10.02695 -9.85650 -9.69406 -9.46615 -8.72843 -8.68790 -6.91858 -5.70274 -3.13724 1.10318 2.32901 2.37590 2.55097 3.10627 3.35563 3.41159 3.43017 3.54687 3.98207 4.14075 4.26892 4.42667 4.54614 4.72377 4.90922 4.96238 5.05999 5.11424 5.24435 5.35032 5.46060 5.49087 5.57858 5.61714 5.71610 5.77640 5.90586 5.98067 6.06609 6.13271 6.27864 6.33668 6.41786 6.44844 6.52093 6.68961 6.70846 6.89261 6.95079 7.02516 7.41704 7.46780 7.58048 7.60314 7.81845 8.24060 8.30974 9.15799 9.76803 10.40019 11.32223 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.003138 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.248175 B = 8919.811131 C = 9348.766495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.142 4.142 12 C 0.158 3.842 13 N -0.699 5.699 14 C 0.522 3.478 15 O -0.527 6.527 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.528 3.472 19 O -0.499 6.499 20 N -0.677 5.677 21 C 0.531 3.469 22 O -0.499 6.499 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.129 4.129 27 C 0.162 3.838 28 H 0.047 0.953 29 H 0.252 0.748 30 H 0.008 0.992 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -16.193 -3.967 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.182 4.182 12 C 0.072 3.928 13 N -0.349 5.349 14 C 0.307 3.693 15 O -0.404 6.404 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.317 3.683 19 O -0.371 6.371 20 N -0.342 5.342 21 C 0.319 3.681 22 O -0.371 6.371 23 C -0.175 4.175 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.169 4.169 27 C 0.054 3.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.197 -16.323 -3.651 16.727 hybrid contribution 0.650 0.842 -0.934 1.415 sum 0.452 -15.481 -4.585 16.152 Atomic orbital electron populations 1.69796 1.04882 1.24782 1.57342 1.24774 0.95667 0.97684 1.02321 0.86107 0.78568 0.83470 0.77535 1.21698 1.21690 1.20693 1.19023 0.90443 0.82284 1.43280 0.90507 1.44525 1.01781 0.99175 1.86513 1.21970 0.84385 0.93019 0.97898 1.23343 0.96723 0.97977 1.00112 1.21726 0.97126 0.92483 0.81431 1.45916 1.32125 1.45210 1.11632 1.19879 0.80661 0.79434 0.89361 1.90731 1.49243 1.60196 1.40209 1.21551 0.94986 0.99338 0.97904 1.21774 1.00714 1.00288 0.93372 1.21016 0.83825 0.77228 0.86263 1.90809 1.22227 1.48322 1.75786 1.44905 1.09424 1.56920 1.22980 1.20791 0.81276 0.76921 0.89080 1.90817 1.47163 1.51405 1.47739 1.21968 0.99634 1.01561 0.94376 1.22486 0.96797 0.97341 0.98262 1.22572 0.96218 0.97288 1.00217 1.22923 1.00444 0.93914 0.99615 1.21790 0.91549 0.85864 0.95385 0.93582 0.93723 0.97359 0.87471 0.91296 0.91348 0.76533 0.86746 0.85758 0.85936 0.74805 0.85979 0.86208 0.91134 0.92210 0.92352 0.92242 0.92286 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.71 10.07 55.49 0.56 -25.15 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.22 -5.73 10.01 -15.06 -0.15 -5.88 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.60 -13.73 3.03 -161.13 -0.49 -14.22 16 10 C 0.15 3.47 5.90 -2.58 -0.02 3.46 16 11 C -0.14 -2.65 5.71 -24.74 -0.14 -2.79 16 12 C 0.16 2.46 0.74 -129.38 -0.10 2.37 16 13 N -0.70 -8.71 5.14 -45.36 -0.23 -8.94 16 14 C 0.52 5.98 6.35 -10.98 -0.07 5.91 16 15 O -0.53 -7.66 13.75 5.56 0.08 -7.58 16 16 C -0.12 -0.89 2.66 -91.52 -0.24 -1.13 16 17 C -0.12 -0.95 4.70 -27.81 -0.13 -1.08 16 18 C 0.53 4.64 7.74 -11.32 -0.09 4.55 16 19 O -0.50 -6.14 17.88 5.60 0.10 -6.04 16 20 N -0.68 -5.15 5.09 -11.75 -0.06 -5.21 16 21 C 0.53 4.32 7.74 -11.32 -0.09 4.23 16 22 O -0.50 -5.76 17.87 5.61 0.10 -5.66 16 23 C -0.14 -0.85 5.24 -27.81 -0.15 -1.00 16 24 C -0.11 -1.53 5.41 -25.12 -0.14 -1.67 16 25 C -0.12 -1.65 6.87 -24.50 -0.17 -1.82 16 26 C -0.13 -2.13 6.22 -24.87 -0.15 -2.29 16 27 C 0.16 2.93 3.67 -65.60 -0.24 2.69 16 28 H 0.05 0.81 7.96 -51.92 -0.41 0.40 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.11 2.84 5.83 -51.93 -0.30 2.53 16 32 H 0.07 1.28 6.53 -51.93 -0.34 0.94 16 33 H 0.07 1.29 7.63 -51.93 -0.40 0.90 16 34 H 0.40 4.28 8.07 -40.82 -0.33 3.95 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 0.88 7.98 -51.93 -0.41 0.46 16 38 H 0.41 2.85 8.79 -40.82 -0.36 2.49 16 39 H 0.12 0.67 7.77 -51.93 -0.40 0.27 16 40 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.04 7.37 -51.93 -0.38 0.66 16 42 H 0.06 0.77 7.58 -51.93 -0.39 0.38 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.47 364.89 -8.09 -40.56 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.66 Total: 5.33 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.96 Total: 5.21 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.22 Total: -53.52 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.28 Total: -19.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.47 -8.09 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.222 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds