Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 119.99928 * 2 1 4 4 H 1.48505 * 109.47084 * 269.99979 * 3 2 1 5 5 H 1.48502 * 109.47585 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.58226 * 359.97188 * 9 7 2 11 11 C 1.54869 * 104.81881 * 204.69726 * 10 9 7 12 12 C 1.54908 * 101.76663 * 322.92356 * 11 10 9 13 13 N 1.46499 * 112.33278 * 273.78686 * 12 11 10 14 14 C 1.34772 * 119.99706 * 298.98511 * 13 12 11 15 15 O 1.21279 * 120.00663 * 0.02562 * 14 13 12 16 16 C 1.50710 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.53239 * 109.62084 * 179.97438 * 16 14 13 18 18 C 1.50590 * 109.15820 * 184.66137 * 17 16 14 19 19 O 1.21233 * 119.35608 * 209.07180 * 18 17 16 20 20 N 1.34138 * 121.28145 * 29.35424 * 18 17 16 21 21 C 1.34148 * 122.58404 * 358.91936 * 20 18 17 22 22 O 1.21220 * 119.36154 * 180.80336 * 21 20 18 23 23 C 1.50589 * 121.27454 * 1.07941 * 21 20 18 24 24 C 1.53584 * 109.09536 * 148.66849 * 12 11 10 25 25 C 1.55455 * 106.06021 * 247.00559 * 24 12 11 26 26 C 1.54759 * 104.36633 * 24.63882 * 25 24 12 27 27 C 1.46982 * 125.57796 * 179.97438 * 9 7 2 28 28 H 1.09008 * 111.81272 * 300.92796 * 27 9 7 29 29 H 0.97000 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.08992 * 110.36916 * 85.85843 * 10 9 7 31 31 H 1.09006 * 110.46093 * 323.57617 * 10 9 7 32 32 H 1.09001 * 110.96595 * 204.80184 * 11 10 9 33 33 H 1.09001 * 110.99697 * 81.05866 * 11 10 9 34 34 H 0.96999 * 120.00564 * 118.99237 * 13 12 11 35 35 H 1.08999 * 109.61513 * 300.37081 * 16 14 13 36 36 H 1.09003 * 109.52192 * 64.75642 * 17 16 14 37 37 H 1.08998 * 109.57757 * 304.60086 * 17 16 14 38 38 H 0.97001 * 118.70905 * 179.17785 * 20 18 17 39 39 H 1.09002 * 109.52021 * 210.74466 * 23 21 20 40 40 H 1.09001 * 109.57645 * 90.58810 * 23 21 20 41 41 H 1.09006 * 110.01192 * 5.64138 * 24 12 11 42 42 H 1.09002 * 110.01932 * 127.02474 * 24 12 11 43 43 H 1.09000 * 110.28476 * 265.95326 * 25 24 12 44 44 H 1.09002 * 110.62437 * 143.48861 * 25 24 12 45 45 H 1.09001 * 110.66666 * 203.88851 * 26 25 24 46 46 H 1.08999 * 110.66808 * 80.75427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1413 -2.5313 0.0006 11 6 -0.4032 -3.9237 0.6261 12 6 0.7720 -4.7539 0.0523 13 7 0.4649 -5.3168 -1.2649 14 6 -0.5638 -6.1758 -1.4075 15 8 -1.2355 -6.4825 -0.4455 16 6 -0.8793 -6.7553 -2.7624 17 6 -2.0843 -7.6956 -2.6520 18 6 -2.3196 -8.3561 -3.9847 19 8 -3.4434 -8.6915 -4.2916 20 7 -1.3090 -8.5855 -4.8364 21 6 -0.0440 -8.2274 -4.5697 22 8 0.8219 -8.4502 -5.3881 23 6 0.3221 -7.5595 -3.2706 24 6 1.1666 -5.8353 1.0690 25 6 2.5896 -5.4576 1.5681 26 6 2.6841 -3.9301 1.3384 27 6 1.9331 -3.7264 0.0005 28 1 2.5742 -3.8802 -0.8676 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5260 -2.4948 -1.0185 31 1 -0.6004 -1.7505 0.6070 32 1 -1.3617 -4.3250 0.2970 33 1 -0.3543 -3.8785 1.7141 34 1 1.0019 -5.0713 -2.0345 35 1 -1.1058 -5.9500 -3.4611 36 1 -2.9677 -7.1237 -2.3678 37 1 -1.8854 -8.4571 -1.8980 38 1 -1.5010 -9.0243 -5.6799 39 1 1.1671 -6.8898 -3.4308 40 1 0.5917 -8.3164 -2.5340 41 1 0.4693 -5.8320 1.9068 42 1 1.1701 -6.8144 0.5899 43 1 3.3464 -5.9792 0.9821 44 1 2.6999 -5.6918 2.6269 45 1 3.7246 -3.6185 1.2469 46 1 2.1886 -3.3885 2.1442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992333473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -107.545031 kcal Electronic energy + Delta-G solvation = -30223.678641 eV Core-core repulsion = 26112.561404 eV Total energy + Delta-G solvation = -4111.117237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65631 -41.48092 -39.96319 -39.63595 -36.54944 -35.97520 -34.98209 -34.50383 -33.24187 -31.41907 -29.85592 -28.34375 -27.78967 -25.86083 -25.63726 -24.24538 -22.62782 -21.51888 -20.93746 -20.33319 -20.17703 -18.89430 -18.85210 -18.36686 -18.15141 -17.19356 -16.87328 -16.79892 -16.34715 -15.81932 -15.77305 -15.61920 -15.46068 -15.17834 -14.91741 -14.67400 -14.53631 -14.30517 -13.81662 -13.49891 -13.36493 -13.12262 -12.86991 -12.80389 -12.60308 -12.47475 -12.29878 -12.23485 -12.02885 -11.92196 -11.83130 -11.64686 -11.51714 -11.42314 -11.39887 -11.34385 -11.17979 -10.69040 -10.61567 -9.88987 -8.81773 -7.71083 -5.14931 0.39908 1.49732 1.50270 1.58681 1.59707 1.67278 1.72311 2.16216 2.53279 2.89409 3.31071 3.38572 3.39569 3.50433 3.60892 3.70079 3.95380 4.02838 4.04594 4.12469 4.41178 4.44129 4.48167 4.54051 4.56658 4.64996 4.72985 4.78620 4.87470 4.88442 4.96274 5.00267 5.05407 5.16647 5.23939 5.30326 5.38955 5.52299 5.58863 5.70770 5.74529 5.75427 5.89965 6.27699 6.35758 6.62655 6.74364 7.16031 7.29309 7.85196 8.47993 9.29801 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.003138 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.248175 B = 8919.811131 C = 9348.766495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.221 4.221 8 H 0.084 0.916 9 N -0.613 5.613 10 C 0.160 3.840 11 C -0.130 4.130 12 C 0.172 3.828 13 N -0.698 5.698 14 C 0.527 3.473 15 O -0.556 6.556 16 C -0.102 4.102 17 C -0.117 4.117 18 C 0.541 3.459 19 O -0.536 6.536 20 N -0.671 5.671 21 C 0.541 3.459 22 O -0.531 6.531 23 C -0.128 4.128 24 C -0.103 4.103 25 C -0.111 4.111 26 C -0.127 4.127 27 C 0.153 3.847 28 H 0.061 0.939 29 H 0.243 0.757 30 H -0.015 1.015 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.411 0.589 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.416 0.584 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -18.190 -4.199 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.351 4.351 8 H 0.102 0.898 9 N -0.337 5.337 10 C 0.035 3.965 11 C -0.170 4.170 12 C 0.085 3.915 13 N -0.349 5.349 14 C 0.313 3.687 15 O -0.434 6.434 16 C -0.123 4.123 17 C -0.157 4.157 18 C 0.331 3.669 19 O -0.411 6.411 20 N -0.335 5.335 21 C 0.331 3.669 22 O -0.406 6.406 23 C -0.168 4.168 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.167 4.167 27 C 0.047 3.953 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.003 0.997 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.256 0.744 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.760 -18.358 -3.897 18.849 hybrid contribution 0.042 1.448 -0.861 1.685 sum 1.802 -16.910 -4.758 17.659 Atomic orbital electron populations 1.70061 1.06190 1.24579 1.59242 1.25520 0.96394 1.00696 1.03405 0.85163 0.77714 0.79762 0.77226 1.21687 1.22744 1.19351 1.19383 0.90967 0.83434 1.41266 0.89808 1.44720 1.01984 1.00595 1.86370 1.21626 0.84540 0.94324 0.95980 1.23136 0.98246 0.96097 0.99473 1.21449 0.94307 0.92418 0.83365 1.45838 1.32896 1.45309 1.10833 1.20340 0.79532 0.78563 0.90277 1.90733 1.49927 1.61090 1.41619 1.21431 0.95520 0.99686 0.95698 1.21742 1.00507 1.00472 0.92954 1.21067 0.83234 0.76288 0.86288 1.90806 1.23702 1.50042 1.76501 1.44855 1.09257 1.56418 1.22977 1.21024 0.80680 0.76044 0.89119 1.90821 1.47942 1.52924 1.48872 1.22018 0.99141 1.02032 0.93571 1.22426 0.97004 0.97399 0.97368 1.22507 0.96285 0.94371 1.01687 1.22792 0.99893 0.96490 0.97511 1.22079 0.92675 0.83925 0.96646 0.92114 0.94742 0.99714 0.91572 0.91372 0.92066 0.75239 0.85628 0.86506 0.84730 0.74442 0.84455 0.84091 0.92128 0.90231 0.89765 0.90820 0.91882 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.27 10.07 21.65 0.22 -55.05 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.22 -11.48 10.01 84.03 0.84 -10.64 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -28.43 3.03 -663.70 -2.01 -30.44 16 10 C 0.16 7.59 5.90 86.85 0.51 8.10 16 11 C -0.13 -4.86 5.71 31.88 0.18 -4.68 16 12 C 0.17 5.02 0.74 5.18 0.00 5.03 16 13 N -0.70 -15.54 5.14 -415.81 -2.14 -17.68 16 14 C 0.53 10.66 6.35 87.66 0.56 11.21 16 15 O -0.56 -14.92 13.75 -3.03 -0.04 -14.96 16 16 C -0.10 -1.27 2.66 -11.38 -0.03 -1.30 16 17 C -0.12 -1.58 4.70 29.89 0.14 -1.44 16 18 C 0.54 8.61 7.74 87.72 0.68 9.29 16 19 O -0.54 -12.74 17.88 -2.88 -0.05 -12.79 16 20 N -0.67 -8.94 5.09 -428.62 -2.18 -11.12 16 21 C 0.54 7.41 7.74 87.72 0.68 8.09 16 22 O -0.53 -11.13 17.87 -2.84 -0.05 -11.18 16 23 C -0.13 -1.14 5.24 29.89 0.16 -0.99 16 24 C -0.10 -2.55 5.41 31.64 0.17 -2.38 16 25 C -0.11 -2.51 6.87 32.04 0.22 -2.29 16 26 C -0.13 -3.97 6.22 31.80 0.20 -3.77 16 27 C 0.15 5.28 3.67 46.24 0.17 5.45 16 28 H 0.06 1.96 7.96 -2.38 -0.02 1.94 16 29 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 30 H -0.02 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.07 3.70 5.83 -2.38 -0.01 3.69 16 32 H 0.07 2.55 6.53 -2.39 -0.02 2.53 16 33 H 0.06 2.35 7.63 -2.39 -0.02 2.34 16 34 H 0.41 7.49 8.07 -92.71 -0.75 6.75 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.13 1.56 7.98 -2.39 -0.02 1.54 16 38 H 0.42 5.18 8.79 -92.71 -0.81 4.37 16 39 H 0.14 0.93 7.77 -2.39 -0.02 0.91 16 40 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 1.65 7.37 -2.38 -0.02 1.63 16 42 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.04 1.69 8.09 -2.39 -0.02 1.67 16 Total: -1.00 -72.79 364.89 0.19 -72.61 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.53 Total: 17.88 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 4.95 Total: 16.46 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -6.11 Total: -114.29 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.14 Total: -38.94 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -72.79 0.19 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992333473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.936 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds