Wall clock time and date at job start Tue Mar 31 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00416 * 2 1 4 4 H 1.48504 * 109.46469 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46902 * 119.99984 * 3 2 1 6 6 H 1.48491 * 109.47259 * 240.00239 * 3 2 1 7 7 C 1.38823 * 119.99639 * 180.27655 * 2 1 3 8 8 H 1.08001 * 119.99556 * 208.33647 * 7 2 1 9 9 N 1.36935 * 119.99979 * 28.33521 * 7 2 1 10 10 C 1.47367 * 125.57786 * 19.13678 * 9 7 2 11 11 C 1.55091 * 104.70447 * 155.25222 * 10 9 7 12 12 C 1.54913 * 101.67464 * 37.35745 * 11 10 9 13 13 N 1.46499 * 112.33171 * 86.04514 * 12 11 10 14 14 C 1.34778 * 120.00192 * 64.36259 * 13 12 11 15 15 O 1.21284 * 119.99654 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00239 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.47137 * 179.97438 * 16 14 13 18 18 C 1.33872 * 122.76580 * 269.70897 * 17 16 14 19 19 O 1.21229 * 125.39292 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.21141 * 179.84163 * 18 17 16 21 21 C 1.54229 * 103.55212 * 0.39025 * 20 18 17 22 22 C 1.33877 * 122.76187 * 90.00103 * 17 16 14 23 23 O 1.21234 * 125.39449 * 359.97438 * 22 17 16 24 24 C 1.53584 * 109.57494 * 211.52225 * 12 11 10 25 25 C 1.54219 * 106.67239 * 113.29701 * 24 12 11 26 26 C 1.55571 * 103.95648 * 334.67749 * 25 24 12 27 27 C 1.46980 * 125.57808 * 199.43966 * 9 7 2 28 28 H 1.08996 * 111.81157 * 59.03115 * 27 9 7 29 29 H 0.97000 * 120.00423 * 185.69649 * 1 2 3 30 30 H 1.09001 * 110.36797 * 274.17375 * 10 9 7 31 31 H 1.08998 * 110.37168 * 36.50890 * 10 9 7 32 32 H 1.09006 * 111.15785 * 279.20232 * 11 10 9 33 33 H 1.09002 * 110.87251 * 155.38420 * 11 10 9 34 34 H 0.96996 * 120.00216 * 244.36353 * 13 12 11 35 35 H 1.08998 * 109.47191 * 299.99822 * 16 14 13 36 36 H 1.08997 * 109.47119 * 59.99976 * 16 14 13 37 37 H 1.08998 * 110.79919 * 241.77869 * 20 18 17 38 38 H 1.08997 * 110.54790 * 118.87268 * 20 18 17 39 39 H 1.09002 * 110.60648 * 241.26188 * 21 20 18 40 40 H 1.08994 * 110.61363 * 118.29281 * 21 20 18 41 41 H 1.08994 * 110.01595 * 232.59992 * 24 12 11 42 42 H 1.08999 * 110.01709 * 353.95046 * 24 12 11 43 43 H 1.09005 * 110.49427 * 93.72577 * 25 24 12 44 44 H 1.09001 * 110.49194 * 216.25479 * 25 24 12 45 45 H 1.09005 * 111.41257 * 279.86364 * 26 25 24 46 46 H 1.08999 * 110.28936 * 156.47606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2023 -0.0058 8 1 2.9932 -1.2604 0.4379 9 7 1.4485 -2.3144 -0.5740 10 6 0.3365 -2.3143 -1.5410 11 6 0.4992 -3.6407 -2.3281 12 6 0.9720 -4.6095 -1.2156 13 7 -0.1483 -5.2059 -0.4838 14 6 -1.0117 -6.0214 -1.1209 15 8 -0.8614 -6.2612 -2.3003 16 6 -2.1644 -6.6344 -0.3683 17 7 -2.9499 -7.4733 -1.2769 18 6 -3.9846 -7.0033 -1.9844 19 8 -4.3890 -5.8606 -1.9625 20 6 -4.5674 -8.1234 -2.8183 21 6 -3.6869 -9.3375 -2.4586 22 6 -2.6957 -8.7743 -1.4636 23 8 -1.8111 -9.4018 -0.9217 24 6 1.9031 -5.6713 -1.8193 25 6 3.3036 -5.4215 -1.2240 26 6 3.2889 -3.9113 -0.8508 27 6 1.8519 -3.7037 -0.3145 28 1 1.7565 -3.9629 0.7398 29 1 -0.4851 -0.8359 0.0834 30 1 -0.6202 -2.2951 -1.0190 31 1 0.4194 -1.4614 -2.2146 32 1 1.2540 -3.5449 -3.1087 33 1 -0.4541 -3.9632 -2.7470 34 1 -0.2687 -5.0138 0.4593 35 1 -1.7810 -7.2443 0.4497 36 1 -2.7974 -5.8435 0.0340 37 1 -4.4902 -7.8950 -3.8813 38 1 -5.6054 -8.3068 -2.5409 39 1 -3.1716 -9.7131 -3.3426 40 1 -4.2863 -10.1237 -1.9998 41 1 1.5556 -6.6686 -1.5500 42 1 1.9339 -5.5672 -2.9038 43 1 3.4581 -6.0394 -0.3394 44 1 4.0754 -5.6213 -1.9674 45 1 3.4680 -3.2838 -1.7240 46 1 4.0235 -3.7072 -0.0719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992464119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:43 Heat of formation + Delta-G solvation = -95.208339 kcal Electronic energy + Delta-G solvation = -30439.279867 eV Core-core repulsion = 26328.697590 eV Total energy + Delta-G solvation = -4110.582277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.01357 -41.67345 -39.69424 -39.64300 -36.95507 -36.34247 -34.95740 -34.39997 -33.47914 -31.64269 -29.35608 -28.30606 -27.34089 -27.13371 -25.75492 -23.35422 -23.15776 -21.91285 -21.56190 -20.51452 -20.33859 -19.46250 -18.84345 -18.45565 -17.56017 -17.52979 -17.22567 -16.79859 -16.19613 -15.90313 -15.63964 -15.50434 -15.31309 -15.27651 -15.20857 -14.94368 -14.75221 -14.43969 -14.21821 -13.75527 -13.57150 -13.42071 -13.28265 -13.14403 -12.72647 -12.46361 -12.32513 -12.11962 -12.04261 -11.97545 -11.90189 -11.79328 -11.73372 -11.59014 -11.53158 -11.41540 -11.14799 -10.67116 -10.49501 -10.17257 -9.02143 -8.31244 -5.35141 0.47871 1.21767 1.39070 1.56214 1.64555 1.67331 1.82683 2.13893 2.62540 3.13256 3.18595 3.22071 3.24380 3.44024 3.55559 3.62115 3.73433 3.80197 3.92942 4.03922 4.17091 4.18280 4.19489 4.22192 4.29349 4.39301 4.47748 4.66484 4.70949 4.74627 4.75722 4.87383 4.89409 4.90921 4.96782 5.02378 5.08885 5.18597 5.22644 5.45469 5.51976 5.72078 5.72690 6.27102 6.29244 6.33830 6.67524 6.87456 7.01329 7.69208 8.29142 8.99176 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.003329 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.752905 B = 8409.726627 C = 9481.438645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.079 4.079 3 Si 1.113 2.887 4 H -0.295 1.295 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.337 4.337 8 H 0.064 0.936 9 N -0.609 5.609 10 C 0.156 3.844 11 C -0.118 4.118 12 C 0.170 3.830 13 N -0.700 5.700 14 C 0.501 3.499 15 O -0.560 6.560 16 C 0.076 3.924 17 N -0.565 5.565 18 C 0.519 3.481 19 O -0.526 6.526 20 C -0.139 4.139 21 C -0.138 4.138 22 C 0.524 3.476 23 O -0.520 6.520 24 C -0.101 4.101 25 C -0.109 4.109 26 C -0.120 4.120 27 C 0.153 3.847 28 H 0.050 0.950 29 H 0.253 0.747 30 H 0.000 1.000 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.410 0.590 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -22.392 -3.551 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.275 4.275 3 Si 0.938 3.062 4 H -0.222 1.222 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.031 3.969 11 C -0.158 4.158 12 C 0.083 3.917 13 N -0.352 5.352 14 C 0.287 3.713 15 O -0.438 6.438 16 C -0.049 4.049 17 N -0.307 5.307 18 C 0.311 3.689 19 O -0.400 6.400 20 C -0.178 4.178 21 C -0.177 4.177 22 C 0.316 3.684 23 O -0.394 6.394 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.160 4.160 27 C 0.046 3.954 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.329 -20.554 -4.090 21.892 hybrid contribution 0.059 -0.680 0.818 1.066 sum -6.270 -21.235 -3.272 22.382 Atomic orbital electron populations 1.70902 1.07778 1.29276 1.50698 1.27100 0.96447 1.04575 0.99384 0.82877 0.73864 0.72148 0.77330 1.22155 1.19696 1.20959 1.19930 0.99422 0.89282 1.37868 0.91802 1.44739 1.39788 1.01284 1.47619 1.21340 0.90270 0.95001 0.90325 1.23003 1.01167 0.94594 0.97004 1.21510 0.85964 0.92272 0.91913 1.45811 1.27819 1.47422 1.14099 1.21143 0.83580 0.78662 0.87919 1.90665 1.74640 1.61837 1.16690 1.21616 0.92522 0.97589 0.93198 1.46600 1.30265 1.12476 1.41357 1.21888 0.78239 0.90060 0.78745 1.90799 1.63355 1.21564 1.64308 1.22589 1.03220 0.89638 1.02375 1.22593 0.96037 0.99517 0.99506 1.21777 0.84585 0.80322 0.81748 1.90761 1.33733 1.63714 1.51228 1.22148 0.94665 0.97088 1.00069 1.22448 0.95886 0.95031 1.01346 1.22870 0.96393 0.96260 1.00497 1.22070 0.93723 0.83792 0.95804 0.93202 0.93697 0.98215 0.96654 0.90448 0.91937 0.75357 0.83836 0.85251 0.84458 0.82737 0.84236 0.82526 0.91875 0.91567 0.90183 0.89892 0.92538 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 12.99 21.65 0.28 -58.67 16 2 C -0.08 -4.55 5.08 84.86 0.43 -4.12 16 3 Si 1.11 51.78 30.00 68.60 2.06 53.84 16 4 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.34 -18.80 9.73 84.04 0.82 -17.99 16 8 H 0.06 3.51 7.97 -2.91 -0.02 3.49 16 9 N -0.61 -30.61 2.90 -663.26 -1.92 -32.53 16 10 C 0.16 7.83 5.36 86.93 0.47 8.29 16 11 C -0.12 -4.87 5.78 31.96 0.18 -4.68 16 12 C 0.17 6.04 0.73 5.19 0.00 6.05 16 13 N -0.70 -21.95 5.23 -415.80 -2.18 -24.12 16 14 C 0.50 15.51 7.05 87.66 0.62 16.13 16 15 O -0.56 -20.48 14.31 -3.04 -0.04 -20.52 16 16 C 0.08 1.78 6.04 85.63 0.52 2.30 16 17 N -0.56 -12.29 2.04 -760.73 -1.55 -13.84 16 18 C 0.52 11.03 8.08 87.99 0.71 11.74 16 19 O -0.53 -16.17 17.47 -2.87 -0.05 -16.22 16 20 C -0.14 -1.11 7.03 30.46 0.21 -0.89 16 21 C -0.14 -0.94 7.03 30.46 0.21 -0.73 16 22 C 0.52 9.99 8.08 87.99 0.71 10.70 16 23 O -0.52 -13.61 17.48 -2.89 -0.05 -13.66 16 24 C -0.10 -3.12 5.24 31.20 0.16 -2.96 16 25 C -0.11 -2.97 6.87 31.89 0.22 -2.75 16 26 C -0.12 -4.19 6.26 32.09 0.20 -3.99 16 27 C 0.15 6.07 3.64 46.24 0.17 6.24 16 28 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 29 H 0.25 16.11 6.19 -92.71 -0.57 15.53 16 30 H 0.00 0.01 6.83 -2.39 -0.02 -0.01 16 31 H 0.01 0.84 8.04 -2.39 -0.02 0.82 16 32 H 0.08 3.09 7.65 -2.38 -0.02 3.07 16 33 H 0.06 2.65 6.82 -2.39 -0.02 2.64 16 34 H 0.41 11.37 8.49 -92.71 -0.79 10.59 16 35 H 0.14 2.66 7.83 -2.39 -0.02 2.64 16 36 H 0.13 2.85 7.82 -2.39 -0.02 2.84 16 37 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.06 1.95 7.40 -2.39 -0.02 1.93 16 42 H 0.07 2.11 7.41 -2.39 -0.02 2.10 16 43 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.18 8.09 -2.38 -0.02 2.16 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -83.76 371.26 2.60 -81.15 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.42 Total: 21.25 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.64 Total: 23.32 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.37 Total: -129.16 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.14 Total: -50.40 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.84 kcal Total: -83.76 2.60 -81.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -83.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds