Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00261 * 2 1 4 4 H 1.48496 * 109.47618 * 85.01022 * 3 2 1 5 5 H 1.48498 * 109.47352 * 205.01795 * 3 2 1 6 6 H 1.48501 * 109.47037 * 325.01265 * 3 2 1 7 7 C 1.38812 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 187.43450 * 7 2 1 9 9 N 1.36941 * 120.00107 * 7.44226 * 7 2 1 10 10 C 1.49293 * 127.10083 * 7.07728 * 9 7 2 11 11 C 1.56318 * 106.46204 * 171.24301 * 10 9 7 12 12 C 1.52136 * 100.91050 * 336.89252 * 11 10 9 13 13 N 1.46497 * 111.49678 * 285.68763 * 12 11 10 14 14 C 1.34779 * 119.99807 * 288.52372 * 13 12 11 15 15 O 1.21281 * 119.99636 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00114 * 179.97438 * 14 13 12 17 17 N 1.46500 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.33878 * 122.75782 * 269.70487 * 17 16 14 19 19 O 1.21230 * 125.39811 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20451 * 179.84311 * 18 17 16 21 21 C 1.54234 * 103.55549 * 0.38788 * 20 18 17 22 22 C 1.33874 * 122.76761 * 89.99926 * 17 16 14 23 23 O 1.21230 * 125.39083 * 359.97438 * 22 17 16 24 24 C 1.51228 * 122.10975 * 150.98781 * 12 11 10 25 25 C 1.55690 * 104.60894 * 218.74730 * 24 12 11 26 26 C 1.56281 * 105.93707 * 7.24817 * 25 24 12 27 27 C 1.42697 * 127.10110 * 187.39256 * 9 7 2 28 28 H 1.09006 * 108.16393 * 104.12643 * 27 9 7 29 29 H 0.96997 * 119.99920 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.04843 * 290.62662 * 10 9 7 31 31 H 1.08998 * 110.04906 * 52.10420 * 10 9 7 32 32 H 1.08997 * 111.27759 * 218.89799 * 11 10 9 33 33 H 1.09008 * 110.96952 * 94.75435 * 11 10 9 34 34 H 0.96999 * 120.00467 * 108.52004 * 13 12 11 35 35 H 1.09008 * 109.46951 * 299.99792 * 16 14 13 36 36 H 1.08994 * 109.46959 * 59.99807 * 16 14 13 37 37 H 1.09003 * 110.79954 * 241.78299 * 20 18 17 38 38 H 1.08997 * 110.54998 * 118.87958 * 20 18 17 39 39 H 1.08994 * 110.60403 * 241.26004 * 21 20 18 40 40 H 1.08996 * 110.73323 * 118.35530 * 21 20 18 41 41 H 1.09000 * 110.40486 * 99.96534 * 24 12 11 42 42 H 1.08999 * 110.50957 * 337.58357 * 24 12 11 43 43 H 1.09002 * 110.15639 * 248.12937 * 25 24 12 44 44 H 1.08994 * 110.22009 * 126.40395 * 25 24 12 45 45 H 1.09003 * 110.97397 * 266.14181 * 26 25 24 46 46 H 1.09006 * 110.96610 * 142.37739 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3923 2.1073 1.3947 5 1 3.5964 1.4120 -0.5921 6 1 1.5044 2.6199 -0.8028 7 6 2.0102 -1.2022 0.0005 8 1 3.0834 -1.2061 0.1216 9 7 1.3341 -2.3832 -0.1525 10 6 -0.1131 -2.5571 -0.4755 11 6 -0.3237 -4.0798 -0.7593 12 6 1.0875 -4.4991 -1.1431 13 7 1.4405 -4.0305 -2.4854 14 6 0.8719 -4.5971 -3.5681 15 8 0.0685 -5.4952 -3.4310 16 6 1.2345 -4.1147 -4.9490 17 7 0.4869 -4.8838 -5.9469 18 6 0.9546 -6.0151 -6.4889 19 8 2.0218 -6.5288 -6.2304 20 6 -0.0615 -6.5529 -7.4727 21 6 -1.2052 -5.5199 -7.4121 22 6 -0.7176 -4.5102 -6.3962 23 8 -1.3220 -3.5199 -6.0445 24 6 1.6029 -5.9005 -0.9034 25 6 3.0810 -5.7040 -0.4556 26 6 3.2761 -4.1630 -0.2838 27 6 1.8660 -3.7016 -0.0302 28 1 1.5418 -4.1115 0.9264 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7250 -2.2443 0.3706 31 1 -0.3713 -1.9744 -1.3597 32 1 -1.0184 -4.2359 -1.5846 33 1 -0.6587 -4.6011 0.1375 34 1 2.0833 -3.3124 -2.5951 35 1 0.9834 -3.0581 -5.0424 36 1 2.3037 -4.2498 -5.1120 37 1 -0.4162 -7.5363 -7.1642 38 1 0.3630 -6.5968 -8.4756 39 1 -2.1287 -5.9895 -7.0735 40 1 -1.3503 -5.0474 -8.3835 41 1 1.5587 -6.4841 -1.8229 42 1 1.0289 -6.3890 -0.1160 43 1 3.7587 -6.0857 -1.2192 44 1 3.2585 -6.2131 0.4917 45 1 3.6749 -3.7162 -1.1946 46 1 3.9178 -3.9438 0.5697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992464127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = -52.498970 kcal Electronic energy + Delta-G solvation = -30783.134532 eV Core-core repulsion = 26674.404272 eV Total energy + Delta-G solvation = -4108.730260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04870 -40.42956 -38.65975 -38.10970 -35.91003 -34.45111 -33.59910 -33.08958 -31.75383 -30.01729 -27.98544 -26.95839 -26.37638 -25.66342 -24.06386 -22.54228 -21.59110 -20.51109 -19.78532 -19.39348 -18.81718 -17.71486 -17.39348 -16.60307 -16.50759 -16.32821 -15.74864 -15.05322 -14.94036 -14.54148 -14.35406 -14.32348 -14.16558 -14.07849 -13.94077 -13.65921 -13.40613 -12.99846 -12.63006 -12.36405 -12.24256 -11.93891 -11.64508 -11.44324 -11.37303 -11.04185 -10.90244 -10.83959 -10.81102 -10.57234 -10.37087 -10.28298 -10.18211 -10.05611 -10.02338 -9.71725 -9.52289 -9.12376 -8.67058 -8.55461 -6.87832 -5.79259 -3.13273 1.39740 2.21124 2.59262 2.87694 3.35923 3.41512 3.43772 3.57730 3.85665 4.00142 4.18428 4.42653 4.56352 4.60064 4.91627 4.96558 5.14225 5.15928 5.20669 5.22529 5.29045 5.30720 5.35842 5.44625 5.59033 5.71165 5.81364 5.90652 5.96739 6.13998 6.21868 6.28886 6.35467 6.41268 6.48238 6.62596 6.65364 6.79922 6.87846 7.12011 7.17659 7.47379 7.57645 7.60457 7.72819 7.92599 8.15724 8.54169 9.09091 9.76533 10.46142 11.34387 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.003974 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.824235 B = 7044.097415 C = 8094.409590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.583 5.583 10 C 0.181 3.819 11 C -0.137 4.137 12 C 0.132 3.868 13 N -0.684 5.684 14 C 0.504 3.496 15 O -0.542 6.542 16 C 0.076 3.924 17 N -0.556 5.556 18 C 0.532 3.468 19 O -0.483 6.483 20 C -0.154 4.154 21 C -0.154 4.154 22 C 0.528 3.472 23 O -0.473 6.473 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.113 4.113 27 C 0.159 3.841 28 H 0.022 0.978 29 H 0.254 0.746 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -13.078 -13.920 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.306 5.306 10 C 0.057 3.943 11 C -0.176 4.176 12 C 0.044 3.956 13 N -0.334 5.334 14 C 0.288 3.712 15 O -0.420 6.420 16 C -0.049 4.049 17 N -0.298 5.298 18 C 0.321 3.679 19 O -0.355 6.355 20 C -0.193 4.193 21 C -0.193 4.193 22 C 0.317 3.683 23 O -0.344 6.344 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.152 4.152 27 C 0.049 3.951 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.029 -13.157 -13.432 18.830 hybrid contribution 0.699 1.398 0.138 1.569 sum 1.728 -11.759 -13.294 17.833 Atomic orbital electron populations 1.69935 1.04996 1.25305 1.55810 1.24808 0.95542 0.97734 1.01819 0.86175 0.78700 0.83754 0.77535 1.21633 1.20600 1.21678 1.18989 0.90755 0.82474 1.44177 0.90323 1.43651 1.05814 0.99214 1.81955 1.21943 0.84231 0.88496 0.99644 1.22774 0.94983 0.99440 1.00434 1.21557 0.97212 0.94115 0.82740 1.45604 1.44754 1.38209 1.04861 1.20446 0.81553 0.83003 0.86200 1.90659 1.34215 1.30403 1.86692 1.21618 0.98649 0.98073 0.86564 1.46272 1.20264 1.25265 1.38026 1.20779 0.87035 0.79172 0.80923 1.90774 1.22473 1.60021 1.62218 1.22432 0.94598 1.01348 1.00949 1.22438 1.00597 0.95734 1.00568 1.20811 0.79786 0.86093 0.81623 1.90828 1.58038 1.26578 1.58925 1.21859 0.95662 0.96020 1.01443 1.22817 0.96163 0.95939 1.00565 1.21824 0.97404 0.94485 1.01485 1.20821 0.92447 0.87441 0.94404 0.96069 0.93617 0.93290 0.93541 0.91516 0.91506 0.75995 0.85859 0.86197 0.86071 0.86257 0.86061 0.86197 0.91348 0.91172 0.92223 0.91921 0.91688 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 10.76 55.49 0.60 -25.78 16 2 C 0.00 -0.04 5.46 -17.43 -0.10 -0.14 16 3 Si 0.91 21.46 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 9 N -0.58 -14.02 3.13 -162.62 -0.51 -14.53 16 10 C 0.18 4.35 5.31 -0.71 0.00 4.35 16 11 C -0.14 -2.78 6.20 -25.39 -0.16 -2.94 16 12 C 0.13 2.41 0.40 -130.70 -0.05 2.36 16 13 N -0.68 -11.83 4.42 -46.57 -0.21 -12.03 16 14 C 0.50 8.57 7.22 -10.98 -0.08 8.49 16 15 O -0.54 -10.59 14.59 5.56 0.08 -10.51 16 16 C 0.08 1.03 6.04 -5.19 -0.03 0.99 16 17 N -0.56 -6.99 2.04 -116.63 -0.24 -7.23 16 18 C 0.53 6.09 8.08 -11.08 -0.09 6.00 16 19 O -0.48 -7.06 17.47 5.60 0.10 -6.96 16 20 C -0.15 -0.94 7.03 -26.94 -0.19 -1.13 16 21 C -0.15 -1.00 7.03 -26.94 -0.19 -1.19 16 22 C 0.53 6.46 8.07 -11.09 -0.09 6.37 16 23 O -0.47 -7.74 17.48 5.60 0.10 -7.64 16 24 C -0.11 -1.80 6.02 -26.19 -0.16 -1.95 16 25 C -0.12 -1.67 6.93 -23.54 -0.16 -1.84 16 26 C -0.11 -1.87 6.46 -26.21 -0.17 -2.04 16 27 C 0.16 3.17 2.64 -68.72 -0.18 2.99 16 28 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.31 7.56 -51.93 -0.39 0.92 16 31 H 0.05 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.07 1.41 7.19 -51.93 -0.37 1.04 16 33 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.40 6.83 7.79 -40.82 -0.32 6.51 16 35 H 0.12 1.60 7.83 -51.92 -0.41 1.20 16 36 H 0.12 1.37 7.82 -51.93 -0.41 0.96 16 37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.18 6.84 -51.93 -0.36 0.82 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.05 7.35 -51.93 -0.38 0.67 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -34.91 371.36 -8.11 -43.02 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.80 Total: 5.67 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -1.80 Total: 13.96 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.36 Total: -59.57 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.28 Total: -25.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.91 -8.11 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.477 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds