Wall clock time and date at job start Tue Mar 31 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00261 * 2 1 4 4 H 1.48496 * 109.47618 * 85.01022 * 3 2 1 5 5 H 1.48498 * 109.47352 * 205.01795 * 3 2 1 6 6 H 1.48501 * 109.47037 * 325.01265 * 3 2 1 7 7 C 1.38812 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 187.43450 * 7 2 1 9 9 N 1.36941 * 120.00107 * 7.44226 * 7 2 1 10 10 C 1.49293 * 127.10083 * 7.07728 * 9 7 2 11 11 C 1.56318 * 106.46204 * 171.24301 * 10 9 7 12 12 C 1.52136 * 100.91050 * 336.89252 * 11 10 9 13 13 N 1.46497 * 111.49678 * 285.68763 * 12 11 10 14 14 C 1.34779 * 119.99807 * 288.52372 * 13 12 11 15 15 O 1.21281 * 119.99636 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00114 * 179.97438 * 14 13 12 17 17 N 1.46500 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.33878 * 122.75782 * 269.70487 * 17 16 14 19 19 O 1.21230 * 125.39811 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20451 * 179.84311 * 18 17 16 21 21 C 1.54234 * 103.55549 * 0.38788 * 20 18 17 22 22 C 1.33874 * 122.76761 * 89.99926 * 17 16 14 23 23 O 1.21230 * 125.39083 * 359.97438 * 22 17 16 24 24 C 1.51228 * 122.10975 * 150.98781 * 12 11 10 25 25 C 1.55690 * 104.60894 * 218.74730 * 24 12 11 26 26 C 1.56281 * 105.93707 * 7.24817 * 25 24 12 27 27 C 1.42697 * 127.10110 * 187.39256 * 9 7 2 28 28 H 1.09006 * 108.16393 * 104.12643 * 27 9 7 29 29 H 0.96997 * 119.99920 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.04843 * 290.62662 * 10 9 7 31 31 H 1.08998 * 110.04906 * 52.10420 * 10 9 7 32 32 H 1.08997 * 111.27759 * 218.89799 * 11 10 9 33 33 H 1.09008 * 110.96952 * 94.75435 * 11 10 9 34 34 H 0.96999 * 120.00467 * 108.52004 * 13 12 11 35 35 H 1.09008 * 109.46951 * 299.99792 * 16 14 13 36 36 H 1.08994 * 109.46959 * 59.99807 * 16 14 13 37 37 H 1.09003 * 110.79954 * 241.78299 * 20 18 17 38 38 H 1.08997 * 110.54998 * 118.87958 * 20 18 17 39 39 H 1.08994 * 110.60403 * 241.26004 * 21 20 18 40 40 H 1.08996 * 110.73323 * 118.35530 * 21 20 18 41 41 H 1.09000 * 110.40486 * 99.96534 * 24 12 11 42 42 H 1.08999 * 110.50957 * 337.58357 * 24 12 11 43 43 H 1.09002 * 110.15639 * 248.12937 * 25 24 12 44 44 H 1.08994 * 110.22009 * 126.40395 * 25 24 12 45 45 H 1.09003 * 110.97397 * 266.14181 * 26 25 24 46 46 H 1.09006 * 110.96610 * 142.37739 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3923 2.1073 1.3947 5 1 3.5964 1.4120 -0.5921 6 1 1.5044 2.6199 -0.8028 7 6 2.0102 -1.2022 0.0005 8 1 3.0834 -1.2061 0.1216 9 7 1.3341 -2.3832 -0.1525 10 6 -0.1131 -2.5571 -0.4755 11 6 -0.3237 -4.0798 -0.7593 12 6 1.0875 -4.4991 -1.1431 13 7 1.4405 -4.0305 -2.4854 14 6 0.8719 -4.5971 -3.5681 15 8 0.0685 -5.4952 -3.4310 16 6 1.2345 -4.1147 -4.9490 17 7 0.4869 -4.8838 -5.9469 18 6 0.9546 -6.0151 -6.4889 19 8 2.0218 -6.5288 -6.2304 20 6 -0.0615 -6.5529 -7.4727 21 6 -1.2052 -5.5199 -7.4121 22 6 -0.7176 -4.5102 -6.3962 23 8 -1.3220 -3.5199 -6.0445 24 6 1.6029 -5.9005 -0.9034 25 6 3.0810 -5.7040 -0.4556 26 6 3.2761 -4.1630 -0.2838 27 6 1.8660 -3.7016 -0.0302 28 1 1.5418 -4.1115 0.9264 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7250 -2.2443 0.3706 31 1 -0.3713 -1.9744 -1.3597 32 1 -1.0184 -4.2359 -1.5846 33 1 -0.6587 -4.6011 0.1375 34 1 2.0833 -3.3124 -2.5951 35 1 0.9834 -3.0581 -5.0424 36 1 2.3037 -4.2498 -5.1120 37 1 -0.4162 -7.5363 -7.1642 38 1 0.3630 -6.5968 -8.4756 39 1 -2.1287 -5.9895 -7.0735 40 1 -1.3503 -5.0474 -8.3835 41 1 1.5587 -6.4841 -1.8229 42 1 1.0289 -6.3890 -0.1160 43 1 3.7587 -6.0857 -1.2192 44 1 3.2585 -6.2131 0.4917 45 1 3.6749 -3.7162 -1.1946 46 1 3.9178 -3.9438 0.5697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992464127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:46 Heat of formation + Delta-G solvation = -76.779567 kcal Electronic energy + Delta-G solvation = -30784.187418 eV Core-core repulsion = 26674.404272 eV Total energy + Delta-G solvation = -4109.783146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.98084 -41.91763 -39.66198 -39.55214 -36.91660 -36.20162 -34.62604 -34.31773 -33.60810 -31.71230 -29.11855 -28.57704 -27.18536 -27.10989 -25.97342 -23.32288 -22.93341 -22.14043 -21.31419 -20.49019 -20.28095 -18.88079 -18.40241 -18.34319 -17.52799 -17.42982 -17.31784 -16.45981 -16.38185 -15.97388 -15.74932 -15.57575 -15.30217 -15.27513 -15.18107 -14.91748 -14.38214 -14.18863 -14.11098 -13.64032 -13.52798 -13.43366 -13.08914 -13.03061 -12.80807 -12.66650 -12.25602 -12.15464 -12.09708 -12.07698 -11.86223 -11.76196 -11.62946 -11.54819 -11.39482 -11.11816 -11.04905 -10.73645 -10.51454 -10.02672 -8.89335 -7.88112 -5.23362 0.50669 1.28038 1.46973 1.47456 1.52033 1.56847 1.71702 2.29832 2.48983 3.03609 3.21372 3.26730 3.32884 3.58884 3.64628 3.75263 3.83516 3.96074 4.04648 4.08180 4.20348 4.21838 4.27319 4.33719 4.36816 4.51251 4.56829 4.74633 4.75916 4.89447 4.91236 4.92617 4.92761 5.00603 5.06466 5.17712 5.25992 5.39373 5.50904 5.56600 5.62613 5.70038 5.76948 6.14450 6.30731 6.49165 6.71370 7.00523 7.15383 7.73895 8.46889 9.25595 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.003974 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.824235 B = 7044.097415 C = 8094.409590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.262 1.262 6 H -0.300 1.300 7 C -0.235 4.235 8 H 0.091 0.909 9 N -0.595 5.595 10 C 0.195 3.805 11 C -0.126 4.126 12 C 0.139 3.861 13 N -0.685 5.685 14 C 0.501 3.499 15 O -0.569 6.569 16 C 0.076 3.924 17 N -0.564 5.564 18 C 0.523 3.477 19 O -0.520 6.520 20 C -0.137 4.137 21 C -0.138 4.138 22 C 0.517 3.483 23 O -0.528 6.528 24 C -0.106 4.106 25 C -0.102 4.102 26 C -0.108 4.108 27 C 0.149 3.851 28 H 0.015 0.985 29 H 0.245 0.755 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.406 0.594 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -15.179 -15.615 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.186 1.186 6 H -0.228 1.228 7 C -0.363 4.363 8 H 0.109 0.891 9 N -0.318 5.318 10 C 0.070 3.930 11 C -0.165 4.165 12 C 0.051 3.949 13 N -0.336 5.336 14 C 0.286 3.714 15 O -0.449 6.449 16 C -0.050 4.050 17 N -0.306 5.306 18 C 0.315 3.685 19 O -0.395 6.395 20 C -0.175 4.175 21 C -0.177 4.177 22 C 0.309 3.691 23 O -0.402 6.402 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.146 4.146 27 C 0.040 3.960 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.242 0.758 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.173 0.827 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.731 -15.308 -15.147 21.708 hybrid contribution 0.160 2.024 0.701 2.148 sum 2.891 -13.284 -14.446 19.837 Atomic orbital electron populations 1.70149 1.06633 1.25325 1.57891 1.25617 0.96248 1.01065 1.02580 0.85135 0.78084 0.79474 0.77071 1.21772 1.18620 1.22751 1.19413 0.91425 0.83266 1.42211 0.89110 1.43764 1.05799 1.00475 1.81778 1.21582 0.84405 0.90529 0.96464 1.22611 0.96526 0.96741 1.00594 1.21497 0.95055 0.95452 0.82909 1.45628 1.44861 1.38299 1.04770 1.21012 0.80760 0.82372 0.87239 1.90629 1.35289 1.31663 1.87282 1.21575 1.00110 0.98188 0.85083 1.46600 1.20628 1.25782 1.37591 1.21783 0.87332 0.78289 0.81064 1.90751 1.24321 1.60745 1.63638 1.22582 0.92437 1.01448 1.01074 1.22588 1.00979 0.94011 1.00111 1.21937 0.79119 0.86171 0.81880 1.90801 1.59222 1.29141 1.61028 1.21839 0.97137 0.93981 1.01469 1.22749 0.94790 0.94241 1.02254 1.21840 0.94939 0.95920 1.01948 1.21029 0.95268 0.85245 0.94495 0.96788 0.94555 0.96874 0.97246 0.92743 0.90168 0.75821 0.86006 0.84181 0.84115 0.82529 0.84433 0.82717 0.92117 0.90264 0.90489 0.89722 0.91421 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.76 21.65 0.23 -57.24 16 2 C -0.06 -3.43 5.46 84.86 0.46 -2.97 16 3 Si 0.97 44.86 29.56 68.60 2.03 46.89 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.23 -12.44 10.27 84.03 0.86 -11.58 16 8 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 9 N -0.60 -29.24 3.13 -668.42 -2.10 -31.33 16 10 C 0.19 9.92 5.31 86.99 0.46 10.38 16 11 C -0.13 -5.26 6.20 31.46 0.20 -5.06 16 12 C 0.14 5.06 0.40 4.33 0.00 5.06 16 13 N -0.69 -23.87 4.42 -419.65 -1.85 -25.72 16 14 C 0.50 17.22 7.22 87.66 0.63 17.85 16 15 O -0.57 -22.42 14.59 -3.03 -0.04 -22.47 16 16 C 0.08 2.07 6.04 85.63 0.52 2.59 16 17 N -0.56 -13.80 2.04 -760.72 -1.55 -15.36 16 18 C 0.52 11.02 8.08 87.99 0.71 11.73 16 19 O -0.52 -14.53 17.47 -2.88 -0.05 -14.58 16 20 C -0.14 -1.14 7.03 30.46 0.21 -0.92 16 21 C -0.14 -1.33 7.03 30.46 0.21 -1.11 16 22 C 0.52 12.28 8.07 87.99 0.71 12.99 16 23 O -0.53 -17.74 17.48 -2.88 -0.05 -17.79 16 24 C -0.11 -3.23 6.02 30.94 0.19 -3.04 16 25 C -0.10 -2.61 6.93 32.66 0.23 -2.39 16 26 C -0.11 -3.33 6.46 30.93 0.20 -3.13 16 27 C 0.15 5.84 2.64 46.47 0.12 5.96 16 28 H 0.01 0.61 7.94 -2.38 -0.02 0.59 16 29 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.01 0.75 7.56 -2.39 -0.02 0.73 16 31 H 0.01 0.53 7.69 -2.39 -0.02 0.51 16 32 H 0.05 2.40 7.19 -2.39 -0.02 2.38 16 33 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 34 H 0.41 13.82 7.79 -92.71 -0.72 13.09 16 35 H 0.12 3.32 7.83 -2.38 -0.02 3.30 16 36 H 0.14 3.16 7.82 -2.39 -0.02 3.14 16 37 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 1.98 6.84 -2.39 -0.02 1.97 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.05 7.35 -2.39 -0.02 2.04 16 46 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -80.96 371.36 2.62 -78.34 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.29 Total: 22.90 kcal Atomic # 6 Polarization: 30.64 SS G_CDS: 5.72 Total: 36.36 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.27 Total: -129.65 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.14 Total: -54.84 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.96 2.62 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.564 kcal (2) G-P(sol) polarization free energy of solvation -80.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds