Wall clock time and date at job start Tue Mar 31 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.49296 * 127.10354 * 0.02606 * 9 7 2 11 11 C 1.56228 * 106.51229 * 188.62164 * 10 9 7 12 12 C 1.52149 * 100.80955 * 23.44928 * 11 10 9 13 13 N 1.46494 * 111.09794 * 73.98205 * 12 11 10 14 14 C 1.34786 * 119.99966 * 61.01434 * 13 12 11 15 15 O 1.21278 * 119.99592 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99812 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.46847 * 179.97438 * 16 14 13 18 18 C 1.33875 * 122.76451 * 269.71177 * 17 16 14 19 19 O 1.21232 * 125.39508 * 359.97438 * 18 17 16 20 20 C 1.51311 * 109.20859 * 179.84573 * 18 17 16 21 21 C 1.54228 * 103.55541 * 0.38328 * 20 18 17 22 22 C 1.33877 * 122.75990 * 90.00277 * 17 16 14 23 23 O 1.21226 * 125.39752 * 0.02562 * 22 17 16 24 24 C 1.51236 * 122.08916 * 208.16313 * 12 11 10 25 25 C 1.56960 * 104.27340 * 140.50231 * 24 12 11 26 26 C 1.56278 * 106.00470 * 353.81634 * 25 24 12 27 27 C 1.42694 * 127.10204 * 179.71167 * 9 7 2 28 28 H 1.08996 * 108.16071 * 256.53914 * 27 9 7 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.05161 * 307.88328 * 10 9 7 31 31 H 1.08999 * 110.05119 * 69.35903 * 10 9 7 32 32 H 1.09001 * 111.14930 * 141.32919 * 11 10 9 33 33 H 1.08996 * 111.15514 * 265.56368 * 11 10 9 34 34 H 0.96996 * 120.00575 * 241.01398 * 13 12 11 35 35 H 1.08995 * 109.47363 * 299.99858 * 16 14 13 36 36 H 1.08996 * 109.47282 * 60.00434 * 16 14 13 37 37 H 1.09005 * 110.79710 * 241.77528 * 20 18 17 38 38 H 1.08997 * 110.42071 * 118.81289 * 20 18 17 39 39 H 1.09003 * 110.60901 * 241.26443 * 21 20 18 40 40 H 1.08994 * 110.60562 * 118.29500 * 21 20 18 41 41 H 1.09006 * 110.40657 * 260.02078 * 24 12 11 42 42 H 1.08996 * 110.41056 * 22.45476 * 24 12 11 43 43 H 1.08998 * 110.75806 * 234.33387 * 25 24 12 44 44 H 1.08998 * 109.55223 * 112.65062 * 25 24 12 45 45 H 1.09002 * 110.97095 * 216.87336 * 26 25 24 46 46 H 1.08999 * 110.97215 * 93.10759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1560 -2.5726 0.0108 11 6 -0.4127 -4.0966 0.2397 12 6 0.8839 -4.5049 0.9231 13 7 0.9244 -4.0255 2.3068 14 6 -0.0059 -4.4382 3.1905 15 8 -0.8767 -5.2060 2.8399 16 6 0.0361 -3.9455 4.6140 17 7 -1.0737 -4.5344 5.3675 18 6 -2.2750 -3.9514 5.4624 19 8 -2.5855 -2.8959 4.9532 20 6 -3.1849 -4.8201 6.3033 21 6 -2.2886 -6.0141 6.6902 22 6 -0.9681 -5.6972 6.0225 23 8 0.0276 -6.3868 6.0732 24 6 1.4414 -5.9067 0.8166 25 6 2.9905 -5.6974 0.6743 26 6 3.2071 -4.1548 0.5484 27 6 1.8806 -3.7026 -0.0007 28 1 1.7820 -4.1088 -1.0073 29 1 -0.4849 0.8401 0.0004 30 1 -0.6015 -1.9931 0.8194 31 1 -0.5751 -2.2628 -0.9465 32 1 -1.2695 -4.2571 0.8941 33 1 -0.5399 -4.6207 -0.7075 34 1 1.6207 -3.4110 2.5871 35 1 0.9815 -4.2368 5.0716 36 1 -0.0536 -2.8593 4.6253 37 1 -4.0435 -5.1572 5.7224 38 1 -3.5103 -4.2806 7.1928 39 1 -2.7012 -6.9452 6.3017 40 1 -2.1681 -6.0685 7.7720 41 1 1.2018 -6.4800 1.7122 42 1 1.0505 -6.4048 -0.0706 43 1 3.3687 -6.2036 -0.2138 44 1 3.4930 -6.0757 1.5645 45 1 4.0147 -3.9298 -0.1482 46 1 3.3988 -3.7069 1.5234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992464130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:49 Heat of formation + Delta-G solvation = -75.198119 kcal Electronic energy + Delta-G solvation = -30878.875737 eV Core-core repulsion = 26769.161168 eV Total energy + Delta-G solvation = -4109.714569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97908 -41.87545 -39.66322 -39.52393 -36.91696 -36.18395 -34.58857 -34.31781 -33.58915 -31.70930 -29.10564 -28.55921 -27.16532 -27.10925 -25.95419 -23.32055 -22.93660 -22.11515 -21.29956 -20.49245 -20.29592 -18.88020 -18.40384 -18.35065 -17.52560 -17.41056 -17.31970 -16.44185 -16.34857 -15.99812 -15.73871 -15.57316 -15.29814 -15.27058 -15.17151 -14.91699 -14.38080 -14.14512 -14.10029 -13.64067 -13.52455 -13.44224 -13.09124 -12.93168 -12.87073 -12.61848 -12.22604 -12.18510 -12.10161 -12.09863 -11.82468 -11.75500 -11.60938 -11.54314 -11.39007 -11.11703 -11.04163 -10.73569 -10.49686 -9.99794 -8.90212 -7.85265 -5.21887 0.50780 1.28234 1.46057 1.48536 1.52997 1.55003 1.72114 2.30892 2.49189 3.04330 3.21324 3.26508 3.34536 3.60449 3.64602 3.75114 3.83243 3.96054 4.05842 4.08061 4.20367 4.22654 4.28297 4.35300 4.38127 4.51917 4.58968 4.75335 4.75855 4.90839 4.91257 4.92211 4.93275 5.02003 5.07337 5.19211 5.25502 5.45927 5.51423 5.56094 5.62549 5.73295 5.77179 6.15317 6.31079 6.49543 6.71606 7.01388 7.16813 7.74844 8.47656 9.26471 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004222 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.619313 B = 6630.419995 C = 7919.552905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.130 4.130 12 C 0.138 3.862 13 N -0.684 5.684 14 C 0.501 3.499 15 O -0.570 6.570 16 C 0.077 3.923 17 N -0.564 5.564 18 C 0.515 3.485 19 O -0.528 6.528 20 C -0.138 4.138 21 C -0.136 4.136 22 C 0.523 3.477 23 O -0.520 6.520 24 C -0.106 4.106 25 C -0.101 4.101 26 C -0.110 4.110 27 C 0.149 3.851 28 H 0.017 0.983 29 H 0.244 0.756 30 H 0.024 0.976 31 H -0.002 1.002 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 -14.511 14.613 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.198 1.198 7 C -0.363 4.363 8 H 0.109 0.891 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.169 4.169 12 C 0.050 3.950 13 N -0.334 5.334 14 C 0.286 3.714 15 O -0.450 6.450 16 C -0.049 4.049 17 N -0.306 5.306 18 C 0.307 3.693 19 O -0.402 6.402 20 C -0.177 4.177 21 C -0.175 4.175 22 C 0.316 3.684 23 O -0.394 6.394 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.149 4.149 27 C 0.039 3.961 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.016 0.984 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.241 0.759 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.146 -14.600 14.085 20.319 hybrid contribution 0.441 1.954 -0.656 2.108 sum -0.705 -12.646 13.429 18.460 Atomic orbital electron populations 1.70158 1.06574 1.25226 1.58176 1.25616 0.96283 1.01013 1.02681 0.85205 0.77056 0.79014 0.78360 1.20397 1.22888 1.19823 1.19387 0.90936 0.83081 1.42873 0.89082 1.43756 1.01624 1.00504 1.85985 1.21616 0.83607 0.90726 0.97152 1.22644 0.97680 0.96652 0.99927 1.21591 0.96739 0.95260 0.81390 1.45579 1.30518 1.47772 1.09514 1.20992 0.81286 0.80878 0.88217 1.90613 1.36910 1.37221 1.80216 1.21561 0.92892 1.01100 0.89337 1.46603 1.14152 1.23766 1.46085 1.21971 0.82715 0.85159 0.79413 1.90817 1.77408 1.23780 1.48219 1.22594 0.98208 0.94781 1.02101 1.22591 0.88455 1.01137 1.05286 1.21785 0.92025 0.78030 0.76603 1.90744 1.36506 1.51455 1.60741 1.22085 0.96515 0.93787 1.02081 1.22962 0.93845 0.93981 1.03126 1.21871 0.95787 0.96096 1.01099 1.21089 0.94346 0.85178 0.95446 0.96588 0.94657 0.95779 0.98360 0.92140 0.90379 0.75917 0.84058 0.86325 0.84419 0.82741 0.84107 0.82430 0.92097 0.90255 0.89561 0.90254 0.90728 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.22 10.55 21.65 0.23 -57.99 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.23 -12.55 10.29 84.03 0.86 -11.68 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.60 -29.63 3.16 -667.96 -2.11 -31.73 16 10 C 0.19 10.08 5.33 86.96 0.46 10.54 16 11 C -0.13 -5.57 6.09 31.43 0.19 -5.37 16 12 C 0.14 5.07 0.42 4.45 0.00 5.07 16 13 N -0.68 -24.29 4.49 -419.09 -1.88 -26.18 16 14 C 0.50 17.90 7.29 87.65 0.64 18.53 16 15 O -0.57 -23.29 14.56 -3.02 -0.04 -23.33 16 16 C 0.08 2.19 6.04 85.63 0.52 2.71 16 17 N -0.56 -14.53 2.04 -760.73 -1.55 -16.09 16 18 C 0.52 13.07 8.08 87.99 0.71 13.78 16 19 O -0.53 -18.92 17.47 -2.88 -0.05 -18.97 16 20 C -0.14 -1.49 7.03 30.46 0.21 -1.28 16 21 C -0.14 -1.24 7.03 30.46 0.21 -1.03 16 22 C 0.52 11.48 8.08 87.99 0.71 12.19 16 23 O -0.52 -14.85 17.48 -2.86 -0.05 -14.90 16 24 C -0.11 -3.16 6.26 31.41 0.20 -2.96 16 25 C -0.10 -2.48 6.97 33.12 0.23 -2.25 16 26 C -0.11 -3.34 6.47 30.93 0.20 -3.14 16 27 C 0.15 5.84 2.66 46.59 0.12 5.96 16 28 H 0.02 0.68 7.99 -2.39 -0.02 0.66 16 29 H 0.24 14.77 8.31 -92.71 -0.77 13.99 16 30 H 0.02 1.43 7.06 -2.39 -0.02 1.41 16 31 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 16 32 H 0.06 2.77 6.27 -2.39 -0.01 2.76 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.40 13.82 7.59 -92.71 -0.70 13.11 16 35 H 0.14 3.29 7.83 -2.39 -0.02 3.28 16 36 H 0.12 3.49 7.82 -2.39 -0.02 3.47 16 37 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.06 1.91 7.73 -2.38 -0.02 1.89 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.01 7.20 -2.39 -0.02 1.99 16 Total: -1.00 -82.52 371.02 2.62 -79.90 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.31 Total: 23.95 kcal Atomic # 6 Polarization: 32.27 SS G_CDS: 5.74 Total: 38.01 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.31 Total: -131.99 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.14 Total: -57.20 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -82.52 2.62 -79.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.703 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds