Wall clock time and date at job start Tue Mar 31 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48504 * 109.47521 * 95.25406 * 3 2 1 5 5 H 1.48500 * 109.47087 * 215.25227 * 3 2 1 6 6 H 1.48500 * 109.47106 * 335.25281 * 3 2 1 7 7 C 1.38810 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00157 * 23.39761 * 7 2 1 9 9 N 1.36933 * 120.00089 * 203.39044 * 7 2 1 10 10 C 1.47373 * 125.58230 * 199.00289 * 9 7 2 11 11 C 1.54607 * 104.95131 * 204.59467 * 10 9 7 12 12 C 1.54910 * 101.87668 * 323.25874 * 11 10 9 13 13 N 1.46502 * 112.77637 * 273.35156 * 12 11 10 14 14 C 1.34768 * 120.00230 * 295.93882 * 13 12 11 15 15 O 1.21284 * 120.00197 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00301 * 180.02562 * 14 13 12 17 17 N 1.46498 * 109.47171 * 179.97438 * 16 14 13 18 18 C 1.33875 * 122.76328 * 269.70784 * 17 16 14 19 19 O 1.21227 * 125.39419 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20857 * 179.84473 * 18 17 16 21 21 C 1.54231 * 103.55309 * 0.38583 * 20 18 17 22 22 C 1.33883 * 122.76183 * 89.99980 * 17 16 14 23 23 O 1.21227 * 125.39363 * 0.02562 * 22 17 16 24 24 C 1.53584 * 109.09375 * 147.91763 * 12 11 10 25 25 C 1.54218 * 106.67609 * 246.90526 * 24 12 11 26 26 C 1.54748 * 104.15615 * 24.94592 * 25 24 12 27 27 C 1.46978 * 125.58121 * 19.31203 * 9 7 2 28 28 H 1.08998 * 111.81446 * 301.87459 * 27 9 7 29 29 H 0.96996 * 119.99717 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.36647 * 323.53959 * 10 9 7 31 31 H 1.09000 * 110.36839 * 85.86505 * 10 9 7 32 32 H 1.08996 * 111.08105 * 205.02289 * 11 10 9 33 33 H 1.08998 * 110.77848 * 81.35224 * 11 10 9 34 34 H 0.97002 * 119.99453 * 115.93835 * 13 12 11 35 35 H 1.09000 * 109.46601 * 299.99966 * 16 14 13 36 36 H 1.09000 * 109.46749 * 59.99565 * 16 14 13 37 37 H 1.08991 * 110.79708 * 241.77651 * 20 18 17 38 38 H 1.09004 * 110.54828 * 118.87279 * 20 18 17 39 39 H 1.08991 * 110.60696 * 241.25930 * 21 20 18 40 40 H 1.08998 * 110.60312 * 118.29192 * 21 20 18 41 41 H 1.09010 * 110.01662 * 127.59685 * 24 12 11 42 42 H 1.08996 * 110.05588 * 6.23308 * 24 12 11 43 43 H 1.09007 * 110.48947 * 266.27688 * 25 24 12 44 44 H 1.09001 * 110.49268 * 143.62127 * 25 24 12 45 45 H 1.08998 * 110.67035 * 203.75749 * 26 25 24 46 46 H 1.09005 * 110.81339 * 80.69606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6087 1.9824 1.3942 5 1 3.4878 1.4748 -0.8081 6 1 1.3965 2.6821 -0.5861 7 6 2.0103 -1.2021 0.0005 8 1 1.5370 -2.0992 -0.3705 9 7 3.2953 -1.2506 0.4713 10 6 4.2745 -2.3137 0.1835 11 6 5.2660 -2.2743 1.3690 12 6 5.3577 -0.7551 1.6577 13 7 6.3702 -0.0825 0.8399 14 6 7.6718 -0.4019 0.9815 15 8 8.0051 -1.2458 1.7863 16 6 8.7134 0.2905 0.1407 17 7 10.0402 -0.2291 0.4813 18 6 10.8074 0.3126 1.4353 19 8 10.5102 1.2711 2.1153 20 6 12.1030 -0.4630 1.5323 21 6 11.9540 -1.5524 0.4508 22 6 10.5876 -1.2812 -0.1399 23 8 10.0705 -1.9158 -1.0341 24 6 5.5894 -0.5425 3.1610 25 6 4.3189 0.1353 3.7131 26 6 3.2057 -0.2844 2.7235 27 6 3.9217 -0.2542 1.3517 28 1 3.9094 0.7419 0.9092 29 1 -0.4849 0.8400 -0.0004 30 1 3.7785 -3.2832 0.1350 31 1 4.7960 -2.1062 -0.7509 32 1 6.2375 -2.6761 1.0811 33 1 4.8633 -2.8110 2.2280 34 1 6.1036 0.5927 0.1965 35 1 8.5102 0.1058 -0.9141 36 1 8.6827 1.3627 0.3344 37 1 12.2111 -0.9140 2.5187 38 1 12.9530 0.1828 1.3118 39 1 11.9880 -2.5452 0.8991 40 1 12.7282 -1.4468 -0.3092 41 1 6.4544 0.1022 3.3177 42 1 5.7451 -1.5017 3.6546 43 1 4.4362 1.2190 3.7184 44 1 4.0963 -0.2304 4.7155 45 1 2.3831 0.4305 2.7440 46 1 2.8463 -1.2887 2.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992464132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:53 Heat of formation + Delta-G solvation = -55.047873 kcal Electronic energy + Delta-G solvation = -30716.499833 eV Core-core repulsion = 26607.659044 eV Total energy + Delta-G solvation = -4108.840789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23240 -40.36960 -38.83455 -38.35900 -36.08997 -34.34157 -33.82191 -33.55705 -32.10274 -30.15884 -28.37272 -27.12754 -26.52950 -26.04466 -23.78600 -22.71195 -21.85443 -20.32972 -20.23736 -19.54709 -19.19313 -17.95958 -17.64085 -16.90749 -16.77880 -16.75184 -16.21609 -15.19218 -15.12007 -14.77334 -14.49319 -14.41755 -14.27202 -14.18634 -13.84066 -13.71567 -13.36068 -13.15373 -13.09889 -12.72158 -12.54848 -12.01552 -11.83144 -11.77959 -11.55620 -11.28256 -11.01103 -10.99286 -10.90746 -10.67996 -10.61504 -10.36835 -10.35351 -10.23373 -10.00828 -9.86427 -9.51467 -9.32206 -8.86147 -8.63684 -7.10898 -5.98336 -3.26984 1.23166 2.00830 2.40791 2.55098 3.22911 3.27221 3.36290 3.43856 3.70452 3.84454 4.03744 4.41627 4.48932 4.52560 4.72167 4.76849 4.87574 4.90014 5.02544 5.05960 5.14943 5.17992 5.20113 5.21711 5.41104 5.60903 5.69993 5.75906 5.92939 5.93198 6.10565 6.13325 6.25456 6.33699 6.39994 6.43993 6.46358 6.55403 6.76259 6.84776 6.86786 7.00199 7.01702 7.40741 7.55275 7.69787 8.18449 8.28509 8.81004 9.65834 10.14707 11.18441 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003522 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.818920 B = 7948.790089 C = 8158.899671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.304 1.304 7 C -0.239 4.239 8 H 0.093 0.907 9 N -0.603 5.603 10 C 0.132 3.868 11 C -0.128 4.128 12 C 0.162 3.838 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.529 6.529 16 C 0.076 3.924 17 N -0.557 5.557 18 C 0.531 3.469 19 O -0.480 6.480 20 C -0.154 4.154 21 C -0.154 4.154 22 C 0.530 3.470 23 O -0.477 6.477 24 C -0.109 4.109 25 C -0.127 4.127 26 C -0.125 4.125 27 C 0.148 3.852 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.402 0.598 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.833 0.330 3.001 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.232 1.232 7 C -0.366 4.366 8 H 0.111 0.889 9 N -0.329 5.329 10 C 0.007 3.993 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.354 5.354 14 C 0.289 3.711 15 O -0.405 6.405 16 C -0.049 4.049 17 N -0.300 5.300 18 C 0.320 3.680 19 O -0.351 6.351 20 C -0.193 4.193 21 C -0.193 4.193 22 C 0.319 3.681 23 O -0.347 6.347 24 C -0.147 4.147 25 C -0.165 4.165 26 C -0.165 4.165 27 C 0.042 3.958 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.237 0.763 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.347 -0.034 3.386 24.581 hybrid contribution 0.122 1.481 -0.506 1.570 sum 24.469 1.447 2.879 24.680 Atomic orbital electron populations 1.69848 1.05490 1.26498 1.53053 1.24919 0.95026 0.97049 1.00216 0.87150 0.79034 0.85347 0.77844 1.20440 1.21012 1.23221 1.18646 0.84934 0.95521 1.37469 0.88923 1.44814 1.10536 1.23188 1.54318 1.21615 0.90017 0.93126 0.94576 1.23023 0.99785 0.93917 0.99938 1.21651 0.86936 0.93518 0.90367 1.45875 1.05476 1.42186 1.41837 1.20530 0.83488 0.83292 0.83819 1.90694 1.80952 1.32550 1.36308 1.21609 0.80825 1.00739 1.01773 1.46295 1.17067 1.30946 1.35691 1.20819 0.86397 0.83121 0.77623 1.90791 1.76273 1.25553 1.42518 1.22443 0.96527 0.97871 1.02495 1.22447 0.95178 1.02110 0.99585 1.20831 0.88104 0.78133 0.81017 1.90808 1.67593 1.48659 1.27673 1.22253 0.97813 1.01266 0.93416 1.22403 0.95274 0.99789 0.99081 1.22848 0.97109 1.02578 0.93943 1.22093 0.88693 0.93375 0.91681 0.93252 0.92716 0.93074 0.95975 0.90785 0.90314 0.76321 0.85787 0.85920 0.85950 0.86141 0.85945 0.86101 0.92061 0.90910 0.92263 0.91749 0.91313 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.38 13.97 55.49 0.78 -26.61 16 2 C 0.03 0.76 5.31 -17.43 -0.09 0.66 16 3 Si 0.87 21.77 23.65 -169.99 -4.02 17.75 16 4 H -0.28 -6.57 5.84 56.52 0.33 -6.24 16 5 H -0.28 -6.81 6.98 56.52 0.39 -6.41 16 6 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 7 C -0.24 -6.59 10.31 -15.06 -0.16 -6.75 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.60 -14.19 2.83 -161.29 -0.46 -14.64 16 10 C 0.13 2.67 7.21 -2.72 -0.02 2.65 16 11 C -0.13 -2.29 5.75 -24.88 -0.14 -2.43 16 12 C 0.16 2.87 0.75 -129.38 -0.10 2.77 16 13 N -0.70 -11.00 5.24 -45.36 -0.24 -11.24 16 14 C 0.50 7.50 7.07 -10.99 -0.08 7.42 16 15 O -0.53 -9.19 14.31 5.55 0.08 -9.11 16 16 C 0.08 0.85 6.04 -5.19 -0.03 0.82 16 17 N -0.56 -5.95 2.04 -116.62 -0.24 -6.18 16 18 C 0.53 5.32 8.08 -11.09 -0.09 5.23 16 19 O -0.48 -6.46 17.47 5.60 0.10 -6.37 16 20 C -0.15 -0.74 7.03 -26.94 -0.19 -0.93 16 21 C -0.15 -0.75 7.03 -26.94 -0.19 -0.94 16 22 C 0.53 5.40 8.08 -11.08 -0.09 5.31 16 23 O -0.48 -6.61 17.48 5.60 0.10 -6.51 16 24 C -0.11 -1.80 5.22 -25.79 -0.13 -1.94 16 25 C -0.13 -2.11 6.84 -25.17 -0.17 -2.28 16 26 C -0.13 -2.54 5.69 -24.88 -0.14 -2.68 16 27 C 0.15 3.12 2.18 -65.61 -0.14 2.98 16 28 H 0.05 1.12 3.22 -51.93 -0.17 0.95 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.33 6.84 -51.93 -0.36 0.97 16 33 H 0.08 1.38 7.62 -51.93 -0.40 0.98 16 34 H 0.40 5.77 8.52 -40.82 -0.35 5.42 16 35 H 0.12 1.22 7.83 -51.93 -0.41 0.81 16 36 H 0.12 1.16 7.82 -51.93 -0.41 0.75 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 1.02 7.40 -51.92 -0.38 0.64 16 42 H 0.07 1.18 7.37 -51.93 -0.38 0.80 16 43 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.52 6.63 -51.93 -0.34 1.18 16 46 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -35.97 362.32 -6.83 -42.80 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.63 Total: 4.75 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -1.77 Total: 9.89 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.16 Total: -58.67 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.28 Total: -21.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.02 Total: 17.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.97 -6.83 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.248 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds