Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48504 * 109.47521 * 95.25406 * 3 2 1 5 5 H 1.48500 * 109.47087 * 215.25227 * 3 2 1 6 6 H 1.48500 * 109.47106 * 335.25281 * 3 2 1 7 7 C 1.38810 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00157 * 23.39761 * 7 2 1 9 9 N 1.36933 * 120.00089 * 203.39044 * 7 2 1 10 10 C 1.47373 * 125.58230 * 199.00289 * 9 7 2 11 11 C 1.54607 * 104.95131 * 204.59467 * 10 9 7 12 12 C 1.54910 * 101.87668 * 323.25874 * 11 10 9 13 13 N 1.46502 * 112.77637 * 273.35156 * 12 11 10 14 14 C 1.34768 * 120.00230 * 295.93882 * 13 12 11 15 15 O 1.21284 * 120.00197 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00301 * 180.02562 * 14 13 12 17 17 N 1.46498 * 109.47171 * 179.97438 * 16 14 13 18 18 C 1.33875 * 122.76328 * 269.70784 * 17 16 14 19 19 O 1.21227 * 125.39419 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20857 * 179.84473 * 18 17 16 21 21 C 1.54231 * 103.55309 * 0.38583 * 20 18 17 22 22 C 1.33883 * 122.76183 * 89.99980 * 17 16 14 23 23 O 1.21227 * 125.39363 * 0.02562 * 22 17 16 24 24 C 1.53584 * 109.09375 * 147.91763 * 12 11 10 25 25 C 1.54218 * 106.67609 * 246.90526 * 24 12 11 26 26 C 1.54748 * 104.15615 * 24.94592 * 25 24 12 27 27 C 1.46978 * 125.58121 * 19.31203 * 9 7 2 28 28 H 1.08998 * 111.81446 * 301.87459 * 27 9 7 29 29 H 0.96996 * 119.99717 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.36647 * 323.53959 * 10 9 7 31 31 H 1.09000 * 110.36839 * 85.86505 * 10 9 7 32 32 H 1.08996 * 111.08105 * 205.02289 * 11 10 9 33 33 H 1.08998 * 110.77848 * 81.35224 * 11 10 9 34 34 H 0.97002 * 119.99453 * 115.93835 * 13 12 11 35 35 H 1.09000 * 109.46601 * 299.99966 * 16 14 13 36 36 H 1.09000 * 109.46749 * 59.99565 * 16 14 13 37 37 H 1.08991 * 110.79708 * 241.77651 * 20 18 17 38 38 H 1.09004 * 110.54828 * 118.87279 * 20 18 17 39 39 H 1.08991 * 110.60696 * 241.25930 * 21 20 18 40 40 H 1.08998 * 110.60312 * 118.29192 * 21 20 18 41 41 H 1.09010 * 110.01662 * 127.59685 * 24 12 11 42 42 H 1.08996 * 110.05588 * 6.23308 * 24 12 11 43 43 H 1.09007 * 110.48947 * 266.27688 * 25 24 12 44 44 H 1.09001 * 110.49268 * 143.62127 * 25 24 12 45 45 H 1.08998 * 110.67035 * 203.75749 * 26 25 24 46 46 H 1.09005 * 110.81339 * 80.69606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6087 1.9824 1.3942 5 1 3.4878 1.4748 -0.8081 6 1 1.3965 2.6821 -0.5861 7 6 2.0103 -1.2021 0.0005 8 1 1.5370 -2.0992 -0.3705 9 7 3.2953 -1.2506 0.4713 10 6 4.2745 -2.3137 0.1835 11 6 5.2660 -2.2743 1.3690 12 6 5.3577 -0.7551 1.6577 13 7 6.3702 -0.0825 0.8399 14 6 7.6718 -0.4019 0.9815 15 8 8.0051 -1.2458 1.7863 16 6 8.7134 0.2905 0.1407 17 7 10.0402 -0.2291 0.4813 18 6 10.8074 0.3126 1.4353 19 8 10.5102 1.2711 2.1153 20 6 12.1030 -0.4630 1.5323 21 6 11.9540 -1.5524 0.4508 22 6 10.5876 -1.2812 -0.1399 23 8 10.0705 -1.9158 -1.0341 24 6 5.5894 -0.5425 3.1610 25 6 4.3189 0.1353 3.7131 26 6 3.2057 -0.2844 2.7235 27 6 3.9217 -0.2542 1.3517 28 1 3.9094 0.7419 0.9092 29 1 -0.4849 0.8400 -0.0004 30 1 3.7785 -3.2832 0.1350 31 1 4.7960 -2.1062 -0.7509 32 1 6.2375 -2.6761 1.0811 33 1 4.8633 -2.8110 2.2280 34 1 6.1036 0.5927 0.1965 35 1 8.5102 0.1058 -0.9141 36 1 8.6827 1.3627 0.3344 37 1 12.2111 -0.9140 2.5187 38 1 12.9530 0.1828 1.3118 39 1 11.9880 -2.5452 0.8991 40 1 12.7282 -1.4468 -0.3092 41 1 6.4544 0.1022 3.3177 42 1 5.7451 -1.5017 3.6546 43 1 4.4362 1.2190 3.7184 44 1 4.0963 -0.2304 4.7155 45 1 2.3831 0.4305 2.7440 46 1 2.8463 -1.2887 2.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992464132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = -81.887122 kcal Electronic energy + Delta-G solvation = -30717.663670 eV Core-core repulsion = 26607.659044 eV Total energy + Delta-G solvation = -4110.004626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.99028 -41.75803 -39.70660 -39.66441 -36.92466 -36.04131 -34.98785 -34.42766 -34.00619 -31.82641 -29.38339 -28.81282 -27.43375 -27.10676 -25.68798 -23.32811 -23.09819 -21.91265 -21.74061 -20.59487 -20.47131 -19.13786 -18.80029 -18.49017 -17.95488 -17.53076 -17.27658 -16.65654 -16.39615 -15.86440 -15.69415 -15.58845 -15.46231 -15.28236 -14.96259 -14.90961 -14.84746 -14.42403 -14.29239 -13.90723 -13.62990 -13.53779 -13.31191 -13.16334 -12.97794 -12.68999 -12.51307 -12.38693 -12.09578 -11.98899 -11.92263 -11.76863 -11.75769 -11.58232 -11.43231 -11.19545 -11.11894 -10.74293 -10.64658 -10.17982 -9.10567 -8.18993 -5.44648 0.50726 1.23532 1.26039 1.32920 1.40348 1.43153 1.69334 2.12946 2.38904 2.96264 3.13266 3.21154 3.27200 3.31277 3.55804 3.63767 3.64697 3.76802 3.95310 4.07036 4.17165 4.19172 4.20648 4.21111 4.25130 4.33260 4.47122 4.65398 4.68382 4.76782 4.77381 4.86772 4.91806 4.93492 4.94132 4.99765 5.06425 5.19285 5.23198 5.39266 5.47433 5.68175 5.75159 6.09086 6.29613 6.31869 6.70015 6.73483 7.00474 7.51967 8.08023 9.01344 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003522 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.818920 B = 7948.790089 C = 8158.899671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.025 4.025 3 Si 0.931 3.069 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.314 1.314 7 C -0.231 4.231 8 H 0.059 0.941 9 N -0.616 5.616 10 C 0.130 3.870 11 C -0.114 4.114 12 C 0.169 3.831 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.554 6.554 16 C 0.074 3.926 17 N -0.565 5.565 18 C 0.523 3.477 19 O -0.522 6.522 20 C -0.139 4.139 21 C -0.139 4.139 22 C 0.521 3.479 23 O -0.523 6.523 24 C -0.100 4.100 25 C -0.116 4.116 26 C -0.127 4.127 27 C 0.140 3.860 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.948 0.947 4.026 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.220 4.220 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.243 1.243 7 C -0.360 4.360 8 H 0.077 0.923 9 N -0.341 5.341 10 C 0.005 3.995 11 C -0.153 4.153 12 C 0.082 3.918 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.432 6.432 16 C -0.051 4.051 17 N -0.307 5.307 18 C 0.315 3.685 19 O -0.396 6.396 20 C -0.178 4.178 21 C -0.178 4.178 22 C 0.313 3.687 23 O -0.397 6.397 24 C -0.139 4.139 25 C -0.154 4.154 26 C -0.166 4.166 27 C 0.034 3.966 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.244 0.756 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.537 0.577 4.419 28.883 hybrid contribution -1.192 1.175 -0.853 1.879 sum 27.345 1.752 3.566 27.632 Atomic orbital electron populations 1.69973 1.07205 1.27154 1.55572 1.25472 0.95553 1.00225 1.00759 0.86211 0.77937 0.80784 0.78889 1.18471 1.19444 1.24271 1.18520 0.86604 0.94401 1.36453 0.92331 1.44835 1.09836 1.24604 1.54840 1.21711 0.89896 0.92069 0.95821 1.22907 0.99008 0.94460 0.98898 1.21479 0.85725 0.93026 0.91619 1.45849 1.05556 1.42320 1.41881 1.21098 0.83495 0.82821 0.83575 1.90671 1.81300 1.33729 1.37525 1.21637 0.80617 1.01288 1.01558 1.46595 1.16700 1.31305 1.36072 1.21773 0.87735 0.82625 0.76357 1.90769 1.77431 1.27495 1.43890 1.22583 0.94438 0.97442 1.03329 1.22588 0.92340 1.02809 1.00068 1.21820 0.89714 0.77047 0.80101 1.90784 1.69129 1.50004 1.29766 1.22187 0.97781 1.01667 0.92227 1.22356 0.93403 1.00442 0.99157 1.22771 0.97632 1.01312 0.94922 1.22209 0.90773 0.92304 0.91273 0.94085 0.92923 0.93376 0.95765 0.90388 0.89785 0.75561 0.84682 0.84233 0.84281 0.82779 0.84375 0.82810 0.91684 0.90316 0.91319 0.89419 0.93596 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.97 21.65 0.30 -59.34 16 2 C -0.02 -1.45 5.31 84.86 0.45 -1.00 16 3 Si 0.93 45.40 23.65 68.60 1.62 47.03 16 4 H -0.26 -11.71 5.84 99.48 0.58 -11.13 16 5 H -0.27 -12.29 6.98 99.48 0.69 -11.60 16 6 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 7 C -0.23 -13.17 10.31 84.03 0.87 -12.30 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 9 N -0.62 -29.13 2.83 -664.21 -1.88 -31.01 16 10 C 0.13 5.24 7.21 86.76 0.63 5.87 16 11 C -0.11 -3.94 5.75 31.79 0.18 -3.76 16 12 C 0.17 5.71 0.75 5.18 0.00 5.71 16 13 N -0.70 -20.79 5.24 -415.80 -2.18 -22.97 16 14 C 0.50 14.14 7.07 87.66 0.62 14.75 16 15 O -0.55 -18.29 14.31 -3.04 -0.04 -18.33 16 16 C 0.07 1.55 6.04 85.64 0.52 2.06 16 17 N -0.56 -10.88 2.04 -760.71 -1.55 -12.44 16 18 C 0.52 9.13 8.08 87.99 0.71 9.85 16 19 O -0.52 -13.13 17.47 -2.87 -0.05 -13.18 16 20 C -0.14 -0.74 7.03 30.46 0.21 -0.52 16 21 C -0.14 -0.79 7.03 30.46 0.21 -0.57 16 22 C 0.52 9.47 8.08 87.99 0.71 10.18 16 23 O -0.52 -13.93 17.48 -2.87 -0.05 -13.98 16 24 C -0.10 -3.06 5.22 31.20 0.16 -2.90 16 25 C -0.12 -3.54 6.84 31.60 0.22 -3.33 16 26 C -0.13 -5.04 5.69 31.80 0.18 -4.86 16 27 C 0.14 5.77 2.18 46.24 0.10 5.87 16 28 H 0.04 1.80 3.22 -2.39 -0.01 1.79 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 2.68 6.84 -2.39 -0.02 2.67 16 33 H 0.08 2.82 7.62 -2.39 -0.02 2.80 16 34 H 0.41 10.97 8.52 -92.71 -0.79 10.18 16 35 H 0.14 2.48 7.83 -2.39 -0.02 2.46 16 36 H 0.14 2.39 7.82 -2.39 -0.02 2.37 16 37 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.15 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.06 1.98 7.40 -2.38 -0.02 1.97 16 42 H 0.08 2.34 7.37 -2.39 -0.02 2.33 16 43 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 2.01 6.63 -2.39 -0.02 2.00 16 46 H 0.07 2.75 8.09 -2.38 -0.02 2.73 16 Total: -1.00 -81.45 362.32 2.04 -79.41 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.09 Total: 19.77 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 5.78 Total: 25.04 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.31 Total: -125.76 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.14 Total: -45.49 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.62 Total: 47.03 kcal Total: -81.45 2.04 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992464132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.473 kcal (2) G-P(sol) polarization free energy of solvation -81.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds