Wall clock time and date at job start Tue Mar 31 2020 19:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99551 * 2 1 4 4 H 1.48500 * 109.47077 * 274.24911 * 3 2 1 5 5 H 1.48498 * 109.47642 * 34.25017 * 3 2 1 6 6 H 1.48504 * 109.46783 * 154.25377 * 3 2 1 7 7 C 1.38810 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00053 * 339.30251 * 7 2 1 9 9 N 1.36940 * 119.99694 * 159.29784 * 7 2 1 10 10 C 1.46848 * 120.38088 * 331.82216 * 9 7 2 11 11 C 1.53356 * 108.81113 * 236.87999 * 10 9 7 12 12 C 1.53176 * 108.77015 * 308.68730 * 11 10 9 13 13 C 1.52838 * 117.65801 * 269.97282 * 12 11 10 14 14 C 1.52816 * 117.71562 * 201.11555 * 12 11 10 15 15 H 1.09002 * 117.52555 * 215.09171 * 14 12 11 16 16 N 1.46495 * 117.49996 * 0.13688 * 14 12 11 17 17 C 1.34781 * 120.00097 * 204.97596 * 16 14 12 18 18 O 1.21280 * 119.99733 * 0.02562 * 17 16 14 19 19 C 1.50695 * 119.99996 * 179.72658 * 17 16 14 20 20 N 1.46500 * 109.47152 * 180.27517 * 19 17 16 21 21 C 1.33879 * 122.76288 * 269.70862 * 20 19 17 22 22 O 1.21220 * 125.39356 * 359.97438 * 21 20 19 23 23 C 1.51312 * 109.20751 * 179.84090 * 21 20 19 24 24 C 1.54234 * 103.55497 * 0.38835 * 23 21 20 25 25 C 1.33883 * 122.76295 * 90.00025 * 20 19 17 26 26 O 1.21223 * 125.39087 * 0.02562 * 25 20 19 27 27 C 1.53188 * 115.07568 * 55.44168 * 12 11 10 28 28 C 1.46832 * 120.38373 * 151.80109 * 9 7 2 29 29 H 0.96997 * 120.00368 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.57752 * 117.08743 * 10 9 7 31 31 H 1.09000 * 109.58549 * 356.68299 * 10 9 7 32 32 H 1.08998 * 109.58708 * 188.89983 * 11 10 9 33 33 H 1.08998 * 109.58461 * 68.47405 * 11 10 9 34 34 H 1.09004 * 117.50255 * 144.81099 * 13 12 11 35 35 H 1.09002 * 117.53034 * 359.75710 * 13 12 11 36 36 H 0.97003 * 120.00293 * 24.98026 * 16 14 12 37 37 H 1.09005 * 109.47365 * 300.27653 * 19 17 16 38 38 H 1.08996 * 109.47180 * 60.27493 * 19 17 16 39 39 H 1.09006 * 110.79744 * 241.78209 * 23 21 20 40 40 H 1.08998 * 110.54801 * 118.87763 * 23 21 20 41 41 H 1.08999 * 110.60425 * 241.25959 * 24 23 21 42 42 H 1.08996 * 110.60737 * 118.29453 * 24 23 21 43 43 H 1.09004 * 109.58584 * 64.35045 * 27 12 11 44 44 H 1.09001 * 109.58863 * 184.77090 * 27 12 11 45 45 H 1.08997 * 109.58317 * 242.92053 * 28 9 7 46 46 H 1.09005 * 109.57832 * 3.32077 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3962 5 1 1.4954 2.6251 0.7879 6 1 3.5898 1.4159 0.6082 7 6 2.0103 -1.2021 0.0005 8 1 1.5226 -2.1071 0.3315 9 7 3.3134 -1.2406 -0.4187 10 6 3.8057 -0.2688 -1.4035 11 6 4.3785 -1.0298 -2.6054 12 6 5.3750 -2.0760 -2.0970 13 6 6.8376 -1.6545 -1.9590 14 6 6.4165 -2.6036 -3.0830 15 1 6.7094 -3.6499 -2.9946 16 7 6.3898 -2.0680 -4.4463 17 6 6.8909 -2.7938 -5.4655 18 8 7.3636 -3.8905 -5.2540 19 6 6.8578 -2.2454 -6.8687 20 7 7.4516 -3.2194 -7.7878 21 6 8.7563 -3.2304 -8.0880 22 8 9.5838 -2.4598 -7.6512 23 6 9.0348 -4.3592 -9.0565 24 6 7.6484 -4.9992 -9.2739 25 6 6.7334 -4.1683 -8.4011 26 8 5.5391 -4.3350 -8.2770 27 6 4.8161 -3.0547 -1.0595 28 6 4.2346 -2.2536 0.1116 29 1 -0.4850 0.8400 0.0004 30 1 4.5868 0.3438 -0.9531 31 1 2.9836 0.3672 -1.7317 32 1 4.8881 -0.3324 -3.2703 33 1 3.5702 -1.5258 -3.1427 34 1 7.4071 -2.0764 -1.1308 35 1 7.0952 -0.6316 -2.2338 36 1 6.0115 -1.1910 -4.6155 37 1 5.8249 -2.0539 -7.1598 38 1 7.4248 -1.3154 -6.9088 39 1 9.7264 -5.0807 -8.6214 40 1 9.4289 -3.9695 -9.9951 41 1 7.6505 -6.0390 -8.9470 42 1 7.3517 -4.9255 -10.3201 43 1 4.0315 -3.6600 -1.5136 44 1 5.6162 -3.7010 -0.6986 45 1 5.0421 -1.7639 0.6558 46 1 3.6946 -2.9239 0.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016964136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:58 Heat of formation + Delta-G solvation = -40.448838 kcal Electronic energy + Delta-G solvation = -29157.641131 eV Core-core repulsion = 25049.433403 eV Total energy + Delta-G solvation = -4108.207727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33601 -40.05038 -38.93763 -38.59552 -36.21266 -35.78272 -33.93831 -33.27859 -31.71243 -30.58048 -29.02075 -28.10453 -26.61722 -24.20818 -23.12109 -22.81177 -22.61367 -21.40607 -20.59069 -19.86468 -18.53029 -18.06803 -17.75501 -16.88574 -16.80616 -16.64474 -15.97518 -15.31665 -15.23238 -15.10350 -14.58870 -14.48016 -14.32360 -14.21797 -14.02663 -13.85627 -13.70819 -13.23419 -13.05859 -12.85519 -12.66186 -12.45200 -12.03992 -11.98886 -11.85582 -11.75206 -11.25959 -11.10333 -10.82247 -10.80792 -10.61484 -10.45307 -10.37926 -10.03988 -9.89657 -9.80517 -9.53950 -9.46688 -8.80643 -8.50922 -6.95941 -5.96173 -3.32022 1.13650 1.88026 2.28854 2.30083 2.97867 3.28454 3.46516 3.49603 3.61499 3.75479 3.95207 3.98501 4.30691 4.41869 4.51056 4.59075 4.74247 4.77252 4.89551 4.92325 4.94206 4.95908 5.10104 5.10707 5.14276 5.28387 5.40160 5.67738 5.82923 5.88344 5.91066 6.02497 6.13357 6.29146 6.32336 6.34941 6.37916 6.41892 6.58600 6.66601 6.68238 6.90007 6.93725 7.21899 7.36346 7.93862 7.96956 8.32771 8.94337 9.71301 10.09360 11.19879 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.002474 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.673782 B =11314.219533 C =11525.075511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.132 3.868 11 C -0.099 4.099 12 C -0.100 4.100 13 C -0.182 4.182 14 C 0.074 3.926 15 H 0.133 0.867 16 N -0.690 5.690 17 C 0.507 3.493 18 O -0.534 6.534 19 C 0.078 3.922 20 N -0.559 5.559 21 C 0.532 3.468 22 O -0.481 6.481 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.530 3.470 26 O -0.475 6.475 27 C -0.099 4.099 28 C 0.153 3.847 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.404 0.596 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -6.688 -19.498 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.006 3.994 11 C -0.138 4.138 12 C -0.101 4.101 13 C -0.221 4.221 14 C -0.031 4.031 15 H 0.151 0.849 16 N -0.340 5.340 17 C 0.291 3.709 18 O -0.410 6.410 19 C -0.048 4.048 20 N -0.302 5.302 21 C 0.321 3.679 22 O -0.352 6.352 23 C -0.193 4.193 24 C -0.193 4.193 25 C 0.319 3.681 26 O -0.346 6.346 27 C -0.138 4.138 28 C 0.027 3.973 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.239 0.761 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.051 -7.057 -19.014 27.826 hybrid contribution 0.205 1.591 0.037 1.604 sum 19.257 -5.466 -18.977 27.583 Atomic orbital electron populations 1.69845 1.05743 1.26528 1.52968 1.25309 0.95226 0.97580 0.99520 0.86936 0.80195 0.84723 0.76834 1.21758 1.23186 1.19501 1.18943 0.85113 0.94731 1.40039 0.89743 1.44277 1.08605 1.34616 1.45224 1.21279 0.97220 0.91999 0.88882 1.21643 0.97221 0.96163 0.98784 1.21941 0.90079 0.99674 0.98449 1.23572 0.98324 0.99952 1.00242 1.21861 1.05544 0.97945 0.77792 0.84893 1.45280 1.61088 1.21107 1.06555 1.20614 0.77899 0.85683 0.86671 1.90703 1.45342 1.20300 1.84688 1.21571 1.02911 0.92924 0.87356 1.46317 1.11334 1.31306 1.41230 1.20840 0.80800 0.85276 0.81005 1.90789 1.48578 1.42166 1.53630 1.22451 0.98856 0.97122 1.00918 1.22456 0.92931 1.01735 1.02213 1.20862 0.87971 0.79821 0.79474 1.90817 1.13684 1.68053 1.62031 1.21686 0.99590 0.96301 0.96234 1.20878 0.92455 0.91056 0.92957 0.92785 0.95586 0.90963 0.93333 0.90938 0.88164 0.88814 0.76076 0.85557 0.85723 0.85894 0.86032 0.85880 0.85979 0.91308 0.92413 0.95790 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.14 24.40 -169.99 -4.15 17.99 16 4 H -0.29 -6.95 6.66 56.52 0.38 -6.58 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.65 6.65 56.52 0.38 -6.28 16 7 C -0.26 -7.20 10.00 -15.06 -0.15 -7.35 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 N -0.60 -14.10 2.71 -172.26 -0.47 -14.57 16 10 C 0.13 2.79 4.23 -3.67 -0.02 2.77 16 11 C -0.10 -1.65 5.37 -26.46 -0.14 -1.79 16 12 C -0.10 -1.52 1.94 -154.50 -0.30 -1.82 16 13 C -0.18 -2.40 9.86 -26.80 -0.26 -2.66 16 14 C 0.07 1.01 6.14 -68.02 -0.42 0.60 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.59 16 16 N -0.69 -8.31 5.35 -53.89 -0.29 -8.59 16 17 C 0.51 6.54 7.90 -10.99 -0.09 6.45 16 18 O -0.53 -8.80 16.00 5.56 0.09 -8.71 16 19 C 0.08 0.73 6.04 -5.20 -0.03 0.70 16 20 N -0.56 -5.32 2.04 -116.63 -0.24 -5.56 16 21 C 0.53 4.75 8.08 -11.09 -0.09 4.66 16 22 O -0.48 -5.90 17.47 5.61 0.10 -5.80 16 23 C -0.15 -0.61 7.03 -26.94 -0.19 -0.80 16 24 C -0.15 -0.63 7.03 -26.94 -0.19 -0.82 16 25 C 0.53 4.93 8.08 -11.08 -0.09 4.84 16 26 O -0.48 -6.22 17.48 5.61 0.10 -6.13 16 27 C -0.10 -1.61 5.83 -26.46 -0.15 -1.76 16 28 C 0.15 2.95 6.51 -3.68 -0.02 2.93 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.54 7.27 -51.93 -0.38 0.17 16 31 H 0.07 1.68 4.32 -51.93 -0.22 1.46 16 32 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 3.95 7.12 -40.82 -0.29 3.66 16 37 H 0.13 1.00 7.83 -51.93 -0.41 0.59 16 38 H 0.12 0.92 7.82 -51.93 -0.41 0.51 16 39 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -37.54 373.25 -7.37 -44.92 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.68 Total: 1.30 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.23 Total: 6.49 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.22 Total: -55.69 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.28 Total: -20.63 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.54 -7.37 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.469 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds