Wall clock time and date at job start Tue Mar 31 2020 19:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99551 * 2 1 4 4 H 1.48500 * 109.47077 * 274.24911 * 3 2 1 5 5 H 1.48498 * 109.47642 * 34.25017 * 3 2 1 6 6 H 1.48504 * 109.46783 * 154.25377 * 3 2 1 7 7 C 1.38810 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00053 * 339.30251 * 7 2 1 9 9 N 1.36940 * 119.99694 * 159.29784 * 7 2 1 10 10 C 1.46848 * 120.38088 * 331.82216 * 9 7 2 11 11 C 1.53356 * 108.81113 * 236.87999 * 10 9 7 12 12 C 1.53176 * 108.77015 * 308.68730 * 11 10 9 13 13 C 1.52838 * 117.65801 * 269.97282 * 12 11 10 14 14 C 1.52816 * 117.71562 * 201.11555 * 12 11 10 15 15 H 1.09002 * 117.52555 * 215.09171 * 14 12 11 16 16 N 1.46495 * 117.49996 * 0.13688 * 14 12 11 17 17 C 1.34781 * 120.00097 * 204.97596 * 16 14 12 18 18 O 1.21280 * 119.99733 * 0.02562 * 17 16 14 19 19 C 1.50695 * 119.99996 * 179.72658 * 17 16 14 20 20 N 1.46500 * 109.47152 * 180.27517 * 19 17 16 21 21 C 1.33879 * 122.76288 * 269.70862 * 20 19 17 22 22 O 1.21220 * 125.39356 * 359.97438 * 21 20 19 23 23 C 1.51312 * 109.20751 * 179.84090 * 21 20 19 24 24 C 1.54234 * 103.55497 * 0.38835 * 23 21 20 25 25 C 1.33883 * 122.76295 * 90.00025 * 20 19 17 26 26 O 1.21223 * 125.39087 * 0.02562 * 25 20 19 27 27 C 1.53188 * 115.07568 * 55.44168 * 12 11 10 28 28 C 1.46832 * 120.38373 * 151.80109 * 9 7 2 29 29 H 0.96997 * 120.00368 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.57752 * 117.08743 * 10 9 7 31 31 H 1.09000 * 109.58549 * 356.68299 * 10 9 7 32 32 H 1.08998 * 109.58708 * 188.89983 * 11 10 9 33 33 H 1.08998 * 109.58461 * 68.47405 * 11 10 9 34 34 H 1.09004 * 117.50255 * 144.81099 * 13 12 11 35 35 H 1.09002 * 117.53034 * 359.75710 * 13 12 11 36 36 H 0.97003 * 120.00293 * 24.98026 * 16 14 12 37 37 H 1.09005 * 109.47365 * 300.27653 * 19 17 16 38 38 H 1.08996 * 109.47180 * 60.27493 * 19 17 16 39 39 H 1.09006 * 110.79744 * 241.78209 * 23 21 20 40 40 H 1.08998 * 110.54801 * 118.87763 * 23 21 20 41 41 H 1.08999 * 110.60425 * 241.25959 * 24 23 21 42 42 H 1.08996 * 110.60737 * 118.29453 * 24 23 21 43 43 H 1.09004 * 109.58584 * 64.35045 * 27 12 11 44 44 H 1.09001 * 109.58863 * 184.77090 * 27 12 11 45 45 H 1.08997 * 109.58317 * 242.92053 * 28 9 7 46 46 H 1.09005 * 109.57832 * 3.32077 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3962 5 1 1.4954 2.6251 0.7879 6 1 3.5898 1.4159 0.6082 7 6 2.0103 -1.2021 0.0005 8 1 1.5226 -2.1071 0.3315 9 7 3.3134 -1.2406 -0.4187 10 6 3.8057 -0.2688 -1.4035 11 6 4.3785 -1.0298 -2.6054 12 6 5.3750 -2.0760 -2.0970 13 6 6.8376 -1.6545 -1.9590 14 6 6.4165 -2.6036 -3.0830 15 1 6.7094 -3.6499 -2.9946 16 7 6.3898 -2.0680 -4.4463 17 6 6.8909 -2.7938 -5.4655 18 8 7.3636 -3.8905 -5.2540 19 6 6.8578 -2.2454 -6.8687 20 7 7.4516 -3.2194 -7.7878 21 6 8.7563 -3.2304 -8.0880 22 8 9.5838 -2.4598 -7.6512 23 6 9.0348 -4.3592 -9.0565 24 6 7.6484 -4.9992 -9.2739 25 6 6.7334 -4.1683 -8.4011 26 8 5.5391 -4.3350 -8.2770 27 6 4.8161 -3.0547 -1.0595 28 6 4.2346 -2.2536 0.1116 29 1 -0.4850 0.8400 0.0004 30 1 4.5868 0.3438 -0.9531 31 1 2.9836 0.3672 -1.7317 32 1 4.8881 -0.3324 -3.2703 33 1 3.5702 -1.5258 -3.1427 34 1 7.4071 -2.0764 -1.1308 35 1 7.0952 -0.6316 -2.2338 36 1 6.0115 -1.1910 -4.6155 37 1 5.8249 -2.0539 -7.1598 38 1 7.4248 -1.3154 -6.9088 39 1 9.7264 -5.0807 -8.6214 40 1 9.4289 -3.9695 -9.9951 41 1 7.6505 -6.0390 -8.9470 42 1 7.3517 -4.9255 -10.3201 43 1 4.0315 -3.6600 -1.5136 44 1 5.6162 -3.7010 -0.6986 45 1 5.0421 -1.7639 0.6558 46 1 3.6946 -2.9239 0.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016964136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:57 Heat of formation + Delta-G solvation = -68.300348 kcal Electronic energy + Delta-G solvation = -29158.848863 eV Core-core repulsion = 25049.433403 eV Total energy + Delta-G solvation = -4109.415459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.00027 -41.15160 -39.82636 -39.69788 -37.37601 -36.92687 -34.77373 -34.35922 -33.53705 -32.08484 -30.46031 -28.98472 -27.13213 -26.05143 -24.60934 -23.63221 -23.35672 -22.90600 -21.75507 -20.60130 -19.96098 -19.00461 -18.61013 -18.30542 -17.55839 -17.54902 -17.30772 -16.89773 -16.23519 -15.95930 -15.83725 -15.46761 -15.37451 -15.31288 -15.24416 -14.94027 -14.51293 -14.47493 -14.29627 -14.25919 -13.71878 -13.55211 -13.49237 -13.47862 -13.04039 -12.66590 -12.44026 -12.28743 -12.12657 -12.11677 -11.82918 -11.70790 -11.62985 -11.55318 -11.31659 -11.14914 -10.92965 -10.74467 -10.62319 -9.79336 -8.87663 -8.16883 -5.48830 0.47748 1.20825 1.28679 1.30583 1.41720 1.51361 1.66412 2.09560 2.41436 2.84496 3.05971 3.19295 3.24713 3.33920 3.47693 3.62168 3.66230 3.75963 3.86116 3.94806 3.99198 4.06060 4.18741 4.22424 4.35100 4.46264 4.56628 4.66724 4.75768 4.78105 4.80203 4.88746 4.89783 4.91611 4.91715 4.94285 5.09917 5.18642 5.27013 5.38008 5.48522 5.71564 5.87616 6.12878 6.26162 6.28493 6.67338 6.93479 6.97980 7.63603 8.03438 9.03306 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.002474 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.673782 B =11314.219533 C =11525.075511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.313 1.313 6 H -0.258 1.258 7 C -0.250 4.250 8 H 0.046 0.954 9 N -0.619 5.619 10 C 0.126 3.874 11 C -0.089 4.089 12 C -0.119 4.119 13 C -0.161 4.161 14 C 0.081 3.919 15 H 0.122 0.878 16 N -0.684 5.684 17 C 0.502 3.498 18 O -0.574 6.574 19 C 0.075 3.925 20 N -0.567 5.567 21 C 0.523 3.477 22 O -0.521 6.521 23 C -0.140 4.140 24 C -0.141 4.141 25 C 0.520 3.480 26 O -0.524 6.524 27 C -0.090 4.090 28 C 0.148 3.852 29 H 0.261 0.739 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.416 0.584 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.657 -6.256 -21.661 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.233 4.233 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.243 1.243 6 H -0.182 1.182 7 C -0.380 4.380 8 H 0.064 0.936 9 N -0.344 5.344 10 C 0.001 3.999 11 C -0.128 4.128 12 C -0.120 4.120 13 C -0.199 4.199 14 C -0.025 4.025 15 H 0.139 0.861 16 N -0.334 5.334 17 C 0.288 3.712 18 O -0.454 6.454 19 C -0.051 4.051 20 N -0.309 5.309 21 C 0.316 3.684 22 O -0.395 6.395 23 C -0.179 4.179 24 C -0.180 4.180 25 C 0.312 3.688 26 O -0.398 6.398 27 C -0.129 4.129 28 C 0.024 3.976 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.254 0.746 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.671 -6.626 -21.208 31.744 hybrid contribution -0.910 1.342 0.731 1.778 sum 21.761 -5.285 -20.477 30.345 Atomic orbital electron populations 1.69988 1.07576 1.27252 1.55728 1.25976 0.95864 1.01210 1.00233 0.85820 0.78844 0.79782 0.77553 1.19794 1.24262 1.18248 1.18863 0.87061 0.93398 1.38660 0.93599 1.44413 1.07644 1.35966 1.46344 1.21349 0.96722 0.91900 0.89932 1.21470 0.97290 0.96732 0.97303 1.21790 0.90997 0.99769 0.99450 1.23674 0.95758 1.00612 0.99849 1.21683 1.04195 0.97939 0.78673 0.86070 1.45236 1.60756 1.21501 1.05933 1.21227 0.76893 0.85123 0.87913 1.90676 1.47179 1.22060 1.85446 1.21681 1.04225 0.93731 0.85427 1.46608 1.11972 1.31377 1.40936 1.21752 0.79967 0.85712 0.81013 1.90763 1.49345 1.44001 1.55371 1.22593 0.99033 0.95303 1.00956 1.22600 0.91349 1.01217 1.02792 1.21829 0.87883 0.79725 0.79319 1.90789 1.15870 1.69305 1.63819 1.21531 0.99742 0.96284 0.95325 1.21030 0.92025 0.90400 0.94184 0.92984 0.94219 0.93363 0.89621 0.92992 0.86802 0.87242 0.74645 0.84352 0.83656 0.84303 0.82668 0.84474 0.82752 0.93433 0.89583 0.94088 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.92 13.97 21.65 0.30 -60.61 16 2 C -0.04 -2.26 5.23 84.86 0.44 -1.81 16 3 Si 0.95 46.20 24.40 68.60 1.67 47.88 16 4 H -0.27 -12.24 6.66 99.48 0.66 -11.58 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 6 H -0.26 -11.89 6.65 99.48 0.66 -11.23 16 7 C -0.25 -14.33 10.00 84.03 0.84 -13.49 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 9 N -0.62 -28.89 2.71 -698.92 -1.89 -30.78 16 10 C 0.13 5.10 4.23 86.43 0.37 5.46 16 11 C -0.09 -2.80 5.37 30.77 0.17 -2.63 16 12 C -0.12 -3.34 1.94 -52.17 -0.10 -3.44 16 13 C -0.16 -3.60 9.86 30.55 0.30 -3.30 16 14 C 0.08 2.04 6.14 44.94 0.28 2.32 16 15 H 0.12 3.42 7.40 -2.39 -0.02 3.40 16 16 N -0.68 -15.05 5.35 -442.79 -2.37 -17.42 16 17 C 0.50 12.40 7.90 87.65 0.69 13.09 16 18 O -0.57 -18.64 16.00 -3.03 -0.05 -18.69 16 19 C 0.07 1.31 6.04 85.63 0.52 1.83 16 20 N -0.57 -10.00 2.04 -760.74 -1.55 -11.55 16 21 C 0.52 8.35 8.08 87.99 0.71 9.06 16 22 O -0.52 -12.11 17.47 -2.84 -0.05 -12.16 16 23 C -0.14 -0.60 7.03 30.46 0.21 -0.38 16 24 C -0.14 -0.69 7.03 30.46 0.21 -0.48 16 25 C 0.52 8.97 8.08 87.99 0.71 9.68 16 26 O -0.52 -13.60 17.48 -2.85 -0.05 -13.65 16 27 C -0.09 -2.82 5.83 30.77 0.18 -2.64 16 28 C 0.15 5.64 6.51 86.43 0.56 6.21 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.04 1.52 7.27 -2.39 -0.02 1.50 16 31 H 0.05 2.18 4.32 -2.39 -0.01 2.17 16 32 H 0.09 2.04 6.75 -2.39 -0.02 2.02 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.42 6.98 7.12 -92.71 -0.66 6.32 16 37 H 0.14 2.05 7.83 -2.38 -0.02 2.03 16 38 H 0.15 1.88 7.82 -2.39 -0.02 1.87 16 39 H 0.14 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 2.10 7.92 -2.38 -0.02 2.08 16 Total: -1.00 -86.75 373.25 2.37 -84.38 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.27 Total: 13.14 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.09 Total: 19.47 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -5.51 Total: -120.37 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.15 Total: -44.50 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.67 Total: 47.88 kcal Total: -86.75 2.37 -84.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.078 kcal (2) G-P(sol) polarization free energy of solvation -86.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds