Wall clock time and date at job start Tue Mar 31 2020 18:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47173 * 239.99699 * 3 2 1 5 5 H 1.48500 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47049 * 119.99324 * 3 2 1 7 7 C 1.38813 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 163.09246 * 7 2 1 9 9 N 1.36935 * 120.00262 * 343.09022 * 7 2 1 10 10 C 1.46930 * 120.62953 * 331.83329 * 9 7 2 11 11 C 1.53197 * 108.77144 * 233.58374 * 10 9 7 12 12 C 1.53042 * 109.31498 * 305.36090 * 11 10 9 13 13 C 1.53043 * 109.53311 * 61.36626 * 12 11 10 14 14 H 1.08997 * 109.49712 * 58.62184 * 13 12 11 15 15 C 1.53003 * 109.49512 * 178.68249 * 13 12 11 16 16 N 1.46497 * 109.47351 * 184.99931 * 15 13 12 17 17 C 1.34773 * 120.00420 * 180.02562 * 16 15 13 18 18 O 1.21496 * 119.99692 * 0.02562 * 17 16 15 19 19 C 1.48327 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31595 * 127.15839 * 359.68664 * 19 17 16 21 21 O 1.21566 * 111.54613 * 180.25664 * 20 19 17 22 22 C 1.32812 * 111.52012 * 359.95340 * 21 20 19 23 23 C 1.35703 * 106.69925 * 0.07976 * 22 21 20 24 24 C 1.50038 * 123.86402 * 179.80724 * 23 22 21 25 25 O 1.43633 * 107.81730 * 345.23878 * 24 23 22 26 26 C 1.42992 * 114.37195 * 50.04973 * 25 24 23 27 27 C 1.50667 * 130.83019 * 180.02562 * 22 21 20 28 28 C 1.46920 * 120.63299 * 151.80430 * 9 7 2 29 29 H 0.96990 * 120.00499 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.59163 * 113.79704 * 10 9 7 31 31 H 1.08997 * 109.58649 * 353.36631 * 10 9 7 32 32 H 1.08999 * 109.49415 * 185.40981 * 11 10 9 33 33 H 1.08998 * 109.52512 * 65.33105 * 11 10 9 34 34 H 1.08998 * 109.45608 * 301.35034 * 12 11 10 35 35 H 1.08995 * 109.44991 * 181.37876 * 12 11 10 36 36 H 1.09004 * 109.46646 * 64.99756 * 15 13 12 37 37 H 1.08992 * 109.47357 * 305.00204 * 15 13 12 38 38 H 0.97005 * 119.99623 * 0.02562 * 16 15 13 39 39 H 1.08993 * 109.79571 * 104.85836 * 24 23 22 40 40 H 1.09007 * 109.78843 * 225.70271 * 24 23 22 41 41 H 1.08998 * 109.39978 * 169.44373 * 26 25 24 42 42 H 1.08997 * 109.40266 * 49.70734 * 26 25 24 43 43 H 1.08995 * 109.82309 * 283.65677 * 27 22 21 44 44 H 1.09003 * 109.81863 * 44.58158 * 27 22 21 45 45 H 1.08999 * 109.58575 * 6.63158 * 28 9 7 46 46 H 1.09001 * 109.58784 * 246.20256 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3623 0.3460 10 6 0.2260 -2.3401 1.2676 11 6 0.4974 -3.3195 2.4140 12 6 0.8118 -4.7011 1.8356 13 6 2.0673 -4.6175 0.9643 14 1 2.9023 -4.2545 1.5634 15 6 2.3997 -6.0055 0.4131 16 7 3.6657 -5.9489 -0.3218 17 6 4.1602 -7.0617 -0.8993 18 8 3.5556 -8.1119 -0.8108 19 6 5.4423 -7.0043 -1.6428 20 7 6.2057 -5.9490 -1.8307 21 8 7.1914 -6.2223 -2.4876 22 6 7.2120 -7.5070 -2.8239 23 6 6.0921 -8.0655 -2.2990 24 6 5.7287 -9.5130 -2.4530 25 8 6.5471 -10.0628 -3.4975 26 6 7.9439 -9.7902 -3.3580 27 6 8.2143 -8.3006 -3.6212 28 6 1.8138 -3.6528 -0.1984 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6771 -2.6405 0.7364 31 1 0.0993 -1.3345 1.6686 32 1 -0.3832 -3.3845 3.0530 33 1 1.3469 -2.9684 2.9997 34 1 -0.0284 -5.0411 1.2301 35 1 0.9812 -5.4055 2.6499 36 1 1.6042 -6.3300 -0.2579 37 1 2.4898 -6.7121 1.2381 38 1 4.1482 -5.1103 -0.3927 39 1 5.9166 -10.0422 -1.5189 40 1 4.6766 -9.6025 -2.7236 41 1 8.5035 -10.3916 -4.0744 42 1 8.2631 -10.0436 -2.3471 43 1 8.0959 -8.0850 -4.6830 44 1 9.2250 -8.0465 -3.3020 45 1 2.7345 -3.5133 -0.7648 46 1 1.0401 -4.0602 -0.8492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:34 Heat of formation + Delta-G solvation = -1.242264 kcal Electronic energy + Delta-G solvation = -28979.735642 eV Core-core repulsion = 24873.228039 eV Total energy + Delta-G solvation = -4106.507603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.43483 -39.79942 -39.25472 -37.83921 -34.98023 -34.38531 -33.60158 -33.01573 -31.11896 -30.46957 -30.30620 -27.04562 -26.05973 -25.30157 -24.52887 -23.81670 -22.13122 -21.41161 -20.99783 -20.18511 -19.09910 -18.24070 -18.15304 -17.17541 -16.66189 -16.45101 -15.94265 -15.79704 -15.41065 -15.25609 -14.84749 -14.31668 -14.28199 -14.08425 -13.77390 -13.62774 -13.45975 -13.24820 -12.82848 -12.39847 -12.36321 -12.20960 -12.17782 -11.84672 -11.58282 -11.33310 -11.02532 -10.72935 -10.70790 -10.54475 -10.44006 -10.30983 -10.25699 -10.19403 -9.93714 -9.62017 -9.52566 -9.45956 -9.10103 -8.47746 -6.69085 -5.80464 -3.23701 0.82326 1.26184 2.43049 2.86175 2.99702 3.23761 3.37424 3.43024 3.44293 3.74719 4.05141 4.25180 4.40651 4.46968 4.56031 4.64991 4.90060 4.96909 5.01447 5.12852 5.14255 5.24952 5.27340 5.37320 5.39199 5.42482 5.58293 5.61559 5.77335 5.85569 5.94808 6.18192 6.23929 6.32595 6.36696 6.56427 6.56763 6.66638 6.73714 6.82444 6.92396 7.30449 7.37905 7.65290 7.68973 7.77509 7.97335 8.43156 9.19410 9.82413 10.39250 11.27912 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002594 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.036867 B =10793.074228 C =12216.882991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.074 0.926 15 C 0.126 3.874 16 N -0.703 5.703 17 C 0.596 3.404 18 O -0.526 6.526 19 C -0.002 4.002 20 N -0.329 5.329 21 O 0.136 5.864 22 C -0.031 4.031 23 C -0.202 4.202 24 C 0.141 3.859 25 O -0.375 6.375 26 C 0.060 3.940 27 C -0.069 4.069 28 C 0.153 3.847 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.050 0.950 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.088 -19.362 -3.538 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.003 3.997 16 N -0.355 5.355 17 C 0.379 3.621 18 O -0.402 6.402 19 C -0.161 4.161 20 N -0.031 5.031 21 O 0.063 5.937 22 C -0.096 4.096 23 C -0.207 4.207 24 C 0.065 3.935 25 O -0.293 6.293 26 C -0.017 4.017 27 C -0.107 4.107 28 C 0.026 3.974 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.268 -18.757 -3.211 23.785 hybrid contribution 0.638 0.957 0.076 1.153 sum 14.905 -17.800 -3.135 23.427 Atomic orbital electron populations 1.70023 1.05268 1.25659 1.53657 1.25048 0.95287 0.98429 1.00769 0.86367 0.78923 0.83313 0.78156 1.20853 1.21608 1.21007 1.19127 0.92498 0.84814 1.42049 0.91789 1.44023 1.35896 1.01275 1.50097 1.20806 0.88534 0.98318 0.88018 1.22175 1.00150 0.95917 0.99864 1.21337 0.96579 0.97859 0.97919 1.21980 0.99054 0.93341 0.99569 0.90745 1.21605 0.84004 0.98576 0.95513 1.45975 1.24824 1.11467 1.53192 1.16799 0.82096 0.84491 0.78665 1.90779 1.59166 1.29688 1.60540 1.22905 0.98929 0.90190 1.04044 1.74749 0.96290 1.22330 1.09769 1.84674 1.34124 1.24972 1.49908 1.24018 0.99273 0.84453 1.01837 1.21348 0.96116 0.99722 1.03507 1.20990 0.96427 0.84607 0.91510 1.88145 1.17224 1.75315 1.48587 1.22747 0.83156 0.92974 1.02815 1.21069 0.96609 0.93313 0.99737 1.20902 0.97524 0.86928 0.92025 0.93549 0.96399 0.89531 0.93096 0.92736 0.92368 0.93359 0.90989 0.91405 0.75367 0.90367 0.86045 0.86855 0.92031 0.87576 0.87602 0.93195 0.96289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 11.20 55.49 0.62 -25.59 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -6.99 9.58 -15.06 -0.14 -7.14 16 8 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.68 2.99 -172.32 -0.52 -15.20 16 10 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 13 C -0.12 -1.97 2.37 -90.50 -0.21 -2.19 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 16 N -0.70 -10.27 5.33 -61.10 -0.33 -10.59 16 17 C 0.60 8.97 7.85 -12.11 -0.10 8.87 16 18 O -0.53 -8.72 16.28 5.37 0.09 -8.64 16 19 C 0.00 -0.03 7.18 -82.90 -0.60 -0.63 16 20 N -0.33 -4.51 11.90 33.26 0.40 -4.11 16 21 O 0.14 1.57 11.17 20.05 0.22 1.80 16 22 C -0.03 -0.30 7.50 -35.23 -0.26 -0.56 16 23 C -0.20 -2.32 6.15 -104.93 -0.65 -2.96 16 24 C 0.14 1.41 6.67 35.69 0.24 1.64 16 25 O -0.37 -3.35 10.76 -35.23 -0.38 -3.73 16 26 C 0.06 0.31 6.77 37.50 0.25 0.57 16 27 C -0.07 -0.36 6.56 -27.55 -0.18 -0.54 16 28 C 0.15 3.15 5.60 -3.71 -0.02 3.13 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 5.94 7.48 -40.82 -0.31 5.64 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.30 7.99 -51.93 -0.41 0.88 16 41 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.28 8.10 -51.93 -0.42 -0.14 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.01 7.14 -51.93 -0.37 0.64 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.27 372.12 -8.28 -40.54 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.87 Total: 1.76 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.09 Total: 1.44 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.18 Total: -55.50 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.27 -8.28 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.302 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds