Wall clock time and date at job start Tue Mar 31 2020 18:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47173 * 239.99699 * 3 2 1 5 5 H 1.48500 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47049 * 119.99324 * 3 2 1 7 7 C 1.38813 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 163.09246 * 7 2 1 9 9 N 1.36935 * 120.00262 * 343.09022 * 7 2 1 10 10 C 1.46930 * 120.62953 * 331.83329 * 9 7 2 11 11 C 1.53197 * 108.77144 * 233.58374 * 10 9 7 12 12 C 1.53042 * 109.31498 * 305.36090 * 11 10 9 13 13 C 1.53043 * 109.53311 * 61.36626 * 12 11 10 14 14 H 1.08997 * 109.49712 * 58.62184 * 13 12 11 15 15 C 1.53003 * 109.49512 * 178.68249 * 13 12 11 16 16 N 1.46497 * 109.47351 * 184.99931 * 15 13 12 17 17 C 1.34773 * 120.00420 * 180.02562 * 16 15 13 18 18 O 1.21496 * 119.99692 * 0.02562 * 17 16 15 19 19 C 1.48327 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31595 * 127.15839 * 359.68664 * 19 17 16 21 21 O 1.21566 * 111.54613 * 180.25664 * 20 19 17 22 22 C 1.32812 * 111.52012 * 359.95340 * 21 20 19 23 23 C 1.35703 * 106.69925 * 0.07976 * 22 21 20 24 24 C 1.50038 * 123.86402 * 179.80724 * 23 22 21 25 25 O 1.43633 * 107.81730 * 345.23878 * 24 23 22 26 26 C 1.42992 * 114.37195 * 50.04973 * 25 24 23 27 27 C 1.50667 * 130.83019 * 180.02562 * 22 21 20 28 28 C 1.46920 * 120.63299 * 151.80430 * 9 7 2 29 29 H 0.96990 * 120.00499 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.59163 * 113.79704 * 10 9 7 31 31 H 1.08997 * 109.58649 * 353.36631 * 10 9 7 32 32 H 1.08999 * 109.49415 * 185.40981 * 11 10 9 33 33 H 1.08998 * 109.52512 * 65.33105 * 11 10 9 34 34 H 1.08998 * 109.45608 * 301.35034 * 12 11 10 35 35 H 1.08995 * 109.44991 * 181.37876 * 12 11 10 36 36 H 1.09004 * 109.46646 * 64.99756 * 15 13 12 37 37 H 1.08992 * 109.47357 * 305.00204 * 15 13 12 38 38 H 0.97005 * 119.99623 * 0.02562 * 16 15 13 39 39 H 1.08993 * 109.79571 * 104.85836 * 24 23 22 40 40 H 1.09007 * 109.78843 * 225.70271 * 24 23 22 41 41 H 1.08998 * 109.39978 * 169.44373 * 26 25 24 42 42 H 1.08997 * 109.40266 * 49.70734 * 26 25 24 43 43 H 1.08995 * 109.82309 * 283.65677 * 27 22 21 44 44 H 1.09003 * 109.81863 * 44.58158 * 27 22 21 45 45 H 1.08999 * 109.58575 * 6.63158 * 28 9 7 46 46 H 1.09001 * 109.58784 * 246.20256 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3623 0.3460 10 6 0.2260 -2.3401 1.2676 11 6 0.4974 -3.3195 2.4140 12 6 0.8118 -4.7011 1.8356 13 6 2.0673 -4.6175 0.9643 14 1 2.9023 -4.2545 1.5634 15 6 2.3997 -6.0055 0.4131 16 7 3.6657 -5.9489 -0.3218 17 6 4.1602 -7.0617 -0.8993 18 8 3.5556 -8.1119 -0.8108 19 6 5.4423 -7.0043 -1.6428 20 7 6.2057 -5.9490 -1.8307 21 8 7.1914 -6.2223 -2.4876 22 6 7.2120 -7.5070 -2.8239 23 6 6.0921 -8.0655 -2.2990 24 6 5.7287 -9.5130 -2.4530 25 8 6.5471 -10.0628 -3.4975 26 6 7.9439 -9.7902 -3.3580 27 6 8.2143 -8.3006 -3.6212 28 6 1.8138 -3.6528 -0.1984 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6771 -2.6405 0.7364 31 1 0.0993 -1.3345 1.6686 32 1 -0.3832 -3.3845 3.0530 33 1 1.3469 -2.9684 2.9997 34 1 -0.0284 -5.0411 1.2301 35 1 0.9812 -5.4055 2.6499 36 1 1.6042 -6.3300 -0.2579 37 1 2.4898 -6.7121 1.2381 38 1 4.1482 -5.1103 -0.3927 39 1 5.9166 -10.0422 -1.5189 40 1 4.6766 -9.6025 -2.7236 41 1 8.5035 -10.3916 -4.0744 42 1 8.2631 -10.0436 -2.3471 43 1 8.0959 -8.0850 -4.6830 44 1 9.2250 -8.0465 -3.3020 45 1 2.7345 -3.5133 -0.7648 46 1 1.0401 -4.0602 -0.8492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023757536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:33 Heat of formation + Delta-G solvation = -22.985566 kcal Electronic energy + Delta-G solvation = -28980.678502 eV Core-core repulsion = 24873.228039 eV Total energy + Delta-G solvation = -4107.450463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.35391 -40.99312 -39.89896 -39.39101 -36.43215 -35.33317 -34.75272 -34.22711 -32.34885 -32.14403 -31.51262 -28.01515 -27.34290 -27.10321 -25.27092 -24.78918 -23.84921 -22.56407 -22.27539 -21.29470 -20.55716 -19.16627 -19.05404 -18.65941 -18.00280 -17.27020 -16.98499 -16.86694 -16.61526 -16.55760 -15.89888 -15.83132 -15.53346 -15.25912 -15.06051 -14.66038 -14.57496 -14.49876 -14.06446 -13.82017 -13.80753 -13.70155 -13.06951 -12.90463 -12.84805 -12.72243 -12.52508 -12.35336 -12.05484 -12.02017 -11.87371 -11.71101 -11.59250 -11.57583 -11.25385 -11.13790 -10.93120 -10.56386 -10.31886 -10.28751 -8.71172 -7.90391 -5.36706 -0.12845 0.40492 1.44318 1.46346 1.53351 1.62785 1.83130 1.88995 2.48092 2.59016 2.82731 3.23936 3.37348 3.50830 3.53482 3.69193 3.91582 3.94221 3.94982 4.01998 4.14072 4.22129 4.35102 4.37621 4.43662 4.50106 4.55059 4.66985 4.68869 4.79373 4.81011 4.83806 4.89939 4.94905 4.99237 5.06931 5.10312 5.25291 5.30729 5.38209 5.52982 5.63349 5.75796 6.00715 6.14414 6.35902 6.72595 6.86846 7.11815 7.82531 8.34241 9.15560 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002594 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.036867 B =10793.074228 C =12216.882991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.102 4.102 14 H 0.074 0.926 15 C 0.136 3.864 16 N -0.704 5.704 17 C 0.596 3.404 18 O -0.545 6.545 19 C -0.023 4.023 20 N -0.353 5.353 21 O 0.139 5.861 22 C -0.015 4.015 23 C -0.220 4.220 24 C 0.147 3.853 25 O -0.389 6.389 26 C 0.052 3.948 27 C -0.066 4.066 28 C 0.152 3.848 29 H 0.250 0.750 30 H -0.005 1.005 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.046 0.954 46 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.524 -20.999 -3.469 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.396 4.396 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.122 4.122 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.354 5.354 17 C 0.381 3.619 18 O -0.422 6.422 19 C -0.180 4.180 20 N -0.055 5.055 21 O 0.066 5.934 22 C -0.081 4.081 23 C -0.226 4.226 24 C 0.070 3.930 25 O -0.308 6.308 26 C -0.024 4.024 27 C -0.104 4.104 28 C 0.026 3.974 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.246 0.754 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.163 0.837 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.157 0.843 45 H 0.065 0.935 46 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 16.721 -20.416 -3.135 26.575 hybrid contribution -0.048 1.413 -0.041 1.415 sum 16.672 -19.002 -3.176 25.478 Atomic orbital electron populations 1.70181 1.06672 1.25976 1.55174 1.25810 0.96054 1.01540 1.01135 0.85353 0.77602 0.79212 0.78361 1.20208 1.21918 1.20280 1.19458 0.92766 0.86089 1.41303 0.91756 1.44289 1.35993 1.02084 1.50870 1.20659 0.87575 0.97883 0.89206 1.22006 1.01053 0.95903 0.97988 1.21333 0.96191 0.96920 0.98873 1.21738 0.99413 0.93242 0.97825 0.90769 1.21483 0.83974 0.97354 0.95928 1.45977 1.24770 1.11489 1.53211 1.16965 0.82454 0.84123 0.78402 1.90757 1.59906 1.30250 1.61331 1.22863 0.98822 0.91301 1.05006 1.74728 0.97064 1.22824 1.10903 1.84637 1.33321 1.26096 1.49371 1.24843 0.99376 0.83429 1.00408 1.21605 0.96774 1.00202 1.04048 1.20864 0.96091 0.83958 0.92116 1.88126 1.19139 1.75270 1.48230 1.23115 0.81397 0.93416 1.04505 1.21406 0.96937 0.92274 0.99794 1.21002 0.96744 0.86094 0.93513 0.94052 0.98726 0.92986 0.90902 0.92954 0.92252 0.89702 0.91382 0.89604 0.75371 0.89684 0.87590 0.83716 0.91159 0.86054 0.84319 0.93512 0.97393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 11.20 21.65 0.24 -55.81 16 2 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 3 Si 0.97 45.42 29.59 68.60 2.03 47.44 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.27 -14.85 9.58 84.03 0.81 -14.04 16 8 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -30.91 2.99 -699.10 -2.09 -33.00 16 10 C 0.17 8.37 5.30 86.36 0.46 8.83 16 11 C -0.13 -4.75 6.08 30.67 0.19 -4.57 16 12 C -0.10 -2.90 5.17 30.62 0.16 -2.74 16 13 C -0.10 -3.26 2.37 -10.71 -0.03 -3.28 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.14 3.79 5.07 86.38 0.44 4.23 16 16 N -0.70 -20.28 5.33 -465.52 -2.48 -22.76 16 17 C 0.60 17.91 7.85 86.93 0.68 18.59 16 18 O -0.55 -18.03 16.28 -3.70 -0.06 -18.09 16 19 C -0.02 -0.63 7.18 42.46 0.30 -0.33 16 20 N -0.35 -9.59 11.90 -48.99 -0.58 -10.17 16 21 O 0.14 3.06 11.17 81.73 0.91 3.98 16 22 C -0.02 -0.27 7.50 25.09 0.19 -0.08 16 23 C -0.22 -4.91 6.15 -20.07 -0.12 -5.03 16 24 C 0.15 2.83 6.67 71.03 0.47 3.30 16 25 O -0.39 -6.27 10.76 -148.98 -1.60 -7.87 16 26 C 0.05 0.37 6.77 72.21 0.49 0.86 16 27 C -0.07 -0.46 6.56 30.06 0.20 -0.26 16 28 C 0.15 6.32 5.60 86.36 0.48 6.81 16 29 H 0.25 14.56 8.31 -92.72 -0.77 13.79 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.41 11.88 7.48 -92.70 -0.69 11.19 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 2.32 7.99 -2.38 -0.02 2.30 16 41 H 0.15 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 43 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.05 1.93 7.14 -2.39 -0.02 1.91 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -72.28 372.12 1.81 -70.47 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.31 Total: 15.91 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.13 Total: 9.89 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -4.91 Total: -121.74 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.75 Total: -21.98 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.28 1.81 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.489 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds