Wall clock time and date at job start Tue Mar 31 2020 18:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47046 * 270.00600 * 3 2 1 5 5 H 1.48504 * 109.47077 * 30.00337 * 3 2 1 6 6 H 1.48496 * 109.47026 * 150.00350 * 3 2 1 7 7 C 1.38817 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99480 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99816 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99842 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.47435 * 32.32989 * 10 9 7 12 12 C 1.55419 * 110.51664 * 269.55435 * 10 9 7 13 13 C 1.55048 * 101.93980 * 201.34921 * 12 10 9 14 14 C 1.54322 * 104.06464 * 40.04098 * 13 12 10 15 15 H 1.08997 * 111.69356 * 97.13463 * 14 13 12 16 16 C 1.53773 * 109.06659 * 221.96522 * 14 13 12 17 17 N 1.47213 * 106.38420 * 132.42412 * 16 14 13 18 18 C 1.34780 * 126.70239 * 148.71922 * 17 16 14 19 19 O 1.21280 * 119.99713 * 354.95732 * 18 17 16 20 20 C 1.50696 * 119.99745 * 174.95522 * 18 17 16 21 21 C 1.53242 * 109.62284 * 266.95323 * 20 18 17 22 22 C 1.50621 * 109.13375 * 184.83517 * 21 20 18 23 23 O 1.21230 * 119.26944 * 208.94425 * 22 21 20 24 24 N 1.34139 * 121.37203 * 28.76716 * 22 21 20 25 25 C 1.34139 * 122.59165 * 359.63489 * 24 22 21 26 26 O 1.21220 * 119.36309 * 180.54307 * 25 24 22 27 27 C 1.50589 * 121.27497 * 0.52497 * 25 24 22 28 28 C 1.47207 * 106.59279 * 328.71611 * 17 16 14 29 29 C 1.53783 * 106.38203 * 31.28295 * 28 17 16 30 30 H 1.08997 * 111.70578 * 102.76139 * 29 28 17 31 31 H 0.97001 * 119.99712 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00128 * 359.97438 * 9 7 2 33 33 H 1.09003 * 111.06487 * 83.17021 * 12 10 9 34 34 H 1.09000 * 110.90935 * 319.46028 * 12 10 9 35 35 H 1.08997 * 110.53457 * 281.35473 * 13 12 10 36 36 H 1.09000 * 110.53840 * 158.72072 * 13 12 10 37 37 H 1.09001 * 110.07624 * 251.65409 * 16 14 13 38 38 H 1.09007 * 110.07181 * 13.18952 * 16 14 13 39 39 H 1.09005 * 109.62136 * 27.32033 * 20 18 17 40 40 H 1.09006 * 109.52183 * 304.56733 * 21 20 18 41 41 H 1.09001 * 109.52537 * 64.75372 * 21 20 18 42 42 H 0.97006 * 118.70670 * 179.61149 * 24 22 21 43 43 H 1.09005 * 109.52210 * 211.01925 * 27 25 24 44 44 H 1.09004 * 109.52185 * 90.83134 * 27 25 24 45 45 H 1.08997 * 110.07564 * 272.05329 * 28 17 16 46 46 H 1.09005 * 110.12084 * 150.53819 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 1 3.5553 -3.2322 -0.5486 12 6 4.3949 -2.9380 1.4529 13 6 5.5896 -3.9058 1.2528 14 6 6.4656 -3.2059 0.1925 15 1 7.2813 -2.6459 0.6497 16 6 6.9672 -4.2532 -0.8155 17 7 6.7234 -3.6913 -2.1542 18 6 7.4574 -3.9061 -3.2639 19 8 8.4815 -4.5525 -3.1978 20 6 7.0057 -3.3431 -4.5868 21 6 6.1681 -4.3881 -5.3317 22 6 5.8227 -3.8602 -6.6994 23 8 4.7973 -4.2245 -7.2337 24 7 6.6241 -2.9932 -7.3362 25 6 7.7674 -2.5393 -6.8014 26 8 8.4425 -1.7487 -7.4249 27 6 8.2284 -2.9926 -5.4414 28 6 5.5212 -2.8489 -2.0439 29 6 5.5168 -2.2844 -0.6134 30 1 5.8451 -1.2454 -0.5891 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.5352 -3.4624 1.8701 34 1 4.6784 -2.0955 2.0838 35 1 5.2421 -4.8712 0.8849 36 1 6.1421 -4.0291 2.1843 37 1 8.0332 -4.4298 -0.6725 38 1 6.4137 -5.1844 -0.6941 39 1 6.4079 -2.4473 -4.4184 40 1 6.7417 -5.3094 -5.4335 41 1 5.2535 -4.5873 -4.7733 42 1 6.3668 -2.6825 -8.2184 43 1 8.7906 -2.1914 -4.9616 44 1 8.8636 -3.8722 -5.5465 45 1 4.6270 -3.4492 -2.2119 46 1 5.5661 -2.0347 -2.7673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026375691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:00 Heat of formation + Delta-G solvation = -93.673903 kcal Electronic energy + Delta-G solvation = -29592.156389 eV Core-core repulsion = 25481.640650 eV Total energy + Delta-G solvation = -4110.515739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99073 -40.57771 -39.21319 -38.89370 -35.83677 -35.46146 -34.25254 -33.55917 -31.38399 -29.74404 -29.40409 -29.07770 -25.91340 -25.23877 -23.62212 -23.24415 -22.59226 -20.51639 -19.89084 -19.46718 -19.28562 -18.19490 -17.79749 -17.59741 -17.53226 -16.48699 -15.91040 -15.64197 -15.55760 -15.10698 -14.85882 -14.80217 -14.47895 -14.33202 -14.07583 -13.89754 -13.44471 -12.96982 -12.84694 -12.74616 -12.71393 -12.33733 -12.06560 -11.94986 -11.77907 -11.50452 -11.23913 -10.95749 -10.90773 -10.85756 -10.66042 -10.62990 -10.54652 -10.52956 -10.44032 -10.12530 -9.99045 -9.67108 -8.99798 -8.92103 -7.36174 -5.85715 -3.22292 1.06370 2.16849 2.26949 2.35015 2.68831 3.29721 3.31806 3.39194 3.49870 3.85222 3.96855 4.04924 4.36351 4.42415 4.46664 4.50387 4.64869 4.71172 4.86321 4.99990 5.06336 5.18898 5.20780 5.25565 5.32552 5.42598 5.45342 5.46490 5.58600 5.63553 5.72796 5.74322 5.84513 5.87109 6.00504 6.07771 6.14037 6.24846 6.37744 6.43596 6.62705 6.80064 6.92260 7.25078 7.38570 7.78398 7.89533 8.33233 9.10799 9.83220 10.01687 11.32380 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003495 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.033612 B = 8008.562204 C = 9508.824994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.189 3.811 11 H 0.068 0.932 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.087 0.913 16 C 0.111 3.889 17 N -0.611 5.611 18 C 0.542 3.458 19 O -0.538 6.538 20 C -0.114 4.114 21 C -0.130 4.130 22 C 0.530 3.470 23 O -0.493 6.493 24 N -0.676 5.676 25 C 0.530 3.470 26 O -0.499 6.499 27 C -0.127 4.127 28 C 0.102 3.898 29 C -0.110 4.110 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.414 0.586 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.060 -9.394 -6.705 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.079 3.921 11 H 0.086 0.914 12 C -0.183 4.183 13 C -0.156 4.156 14 C -0.119 4.119 15 H 0.105 0.895 16 C -0.011 4.011 17 N -0.344 5.344 18 C 0.330 3.670 19 O -0.416 6.416 20 C -0.135 4.135 21 C -0.170 4.170 22 C 0.319 3.681 23 O -0.365 6.365 24 N -0.342 5.342 25 C 0.318 3.682 26 O -0.371 6.371 27 C -0.167 4.167 28 C -0.021 4.021 29 C -0.131 4.131 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.254 0.746 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.251 -9.659 -7.169 21.030 hybrid contribution 0.298 1.546 -0.265 1.597 sum 17.549 -8.113 -7.433 20.713 Atomic orbital electron populations 1.69695 1.05144 1.25926 1.57088 1.24672 0.95179 0.97172 1.01812 0.86598 0.79244 0.85143 0.77769 1.21089 1.21722 1.20331 1.19057 0.80486 0.94707 1.43494 0.89139 1.42800 1.04089 1.01809 1.89897 1.21294 0.88378 0.89366 0.93065 0.91384 1.23327 0.96565 0.98241 1.00211 1.22508 0.96780 0.98633 0.97658 1.22572 0.98032 0.95776 0.95543 0.89509 1.22251 1.01899 0.96461 0.80529 1.48656 1.28565 1.48027 1.09135 1.19607 0.83041 0.80437 0.83953 1.90727 1.23900 1.41202 1.85736 1.21491 0.97691 1.00684 0.93661 1.21877 1.03738 0.99838 0.91590 1.20734 0.82421 0.77099 0.87875 1.90838 1.23584 1.54894 1.67175 1.44874 1.22993 1.43638 1.22652 1.20845 0.79377 0.79383 0.88547 1.90811 1.52715 1.31343 1.62235 1.21841 0.98310 1.06225 0.90282 1.22451 0.87130 0.94095 0.98386 1.22950 0.97662 0.99506 0.92943 0.89347 0.92967 0.80585 0.91557 0.91662 0.91420 0.92000 0.90386 0.90819 0.87187 0.86087 0.85783 0.74589 0.86225 0.85499 0.89981 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 20.90 27.73 -169.99 -4.71 16.19 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 7 C -0.25 -6.43 10.44 -15.06 -0.16 -6.58 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.74 -15.52 5.02 -51.51 -0.26 -15.78 16 10 C 0.19 3.00 3.04 -65.95 -0.20 2.80 16 11 H 0.07 1.12 7.13 -51.93 -0.37 0.75 16 12 C -0.14 -2.06 6.63 -24.36 -0.16 -2.22 16 13 C -0.12 -1.25 6.34 -24.96 -0.16 -1.41 16 14 C -0.10 -1.02 3.91 -88.53 -0.35 -1.37 16 15 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.11 1.08 6.56 -3.25 -0.02 1.06 16 17 N -0.61 -6.10 3.32 -171.58 -0.57 -6.67 16 18 C 0.54 5.35 6.92 -10.99 -0.08 5.28 16 19 O -0.54 -6.79 16.35 5.56 0.09 -6.70 16 20 C -0.11 -0.83 2.35 -91.52 -0.21 -1.04 16 21 C -0.13 -0.89 5.35 -27.80 -0.15 -1.04 16 22 C 0.53 4.62 7.74 -11.31 -0.09 4.54 16 23 O -0.49 -6.11 17.87 5.60 0.10 -6.01 16 24 N -0.68 -5.34 5.09 -11.74 -0.06 -5.40 16 25 C 0.53 4.55 7.74 -11.32 -0.09 4.46 16 26 O -0.50 -5.97 17.87 5.61 0.10 -5.87 16 27 C -0.13 -0.89 5.08 -27.81 -0.14 -1.03 16 28 C 0.10 1.07 6.31 -3.25 -0.02 1.05 16 29 C -0.11 -1.35 3.59 -88.53 -0.32 -1.67 16 30 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.36 7.47 5.50 -40.82 -0.22 7.25 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.67 7.19 -51.93 -0.37 0.29 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.78 7.88 -51.93 -0.41 0.38 16 38 H 0.07 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.11 0.74 6.38 -51.93 -0.33 0.41 16 40 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.41 3.01 8.79 -40.82 -0.36 2.65 16 43 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.13 0.83 7.71 -51.93 -0.40 0.43 16 45 H 0.08 0.88 7.13 -51.93 -0.37 0.51 16 46 H 0.08 0.74 6.62 -51.93 -0.34 0.40 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -33.85 368.10 -7.73 -41.58 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.51 Total: 7.46 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.23 Total: 2.93 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.11 Total: -55.13 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.29 Total: -18.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.85 -7.73 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026375691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.096 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds