Wall clock time and date at job start Tue Mar 31 2020 18:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47046 * 270.00600 * 3 2 1 5 5 H 1.48504 * 109.47077 * 30.00337 * 3 2 1 6 6 H 1.48496 * 109.47026 * 150.00350 * 3 2 1 7 7 C 1.38817 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99480 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99816 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99842 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.47435 * 32.32989 * 10 9 7 12 12 C 1.55419 * 110.51664 * 269.55435 * 10 9 7 13 13 C 1.55048 * 101.93980 * 201.34921 * 12 10 9 14 14 C 1.54322 * 104.06464 * 40.04098 * 13 12 10 15 15 H 1.08997 * 111.69356 * 97.13463 * 14 13 12 16 16 C 1.53773 * 109.06659 * 221.96522 * 14 13 12 17 17 N 1.47213 * 106.38420 * 132.42412 * 16 14 13 18 18 C 1.34780 * 126.70239 * 148.71922 * 17 16 14 19 19 O 1.21280 * 119.99713 * 354.95732 * 18 17 16 20 20 C 1.50696 * 119.99745 * 174.95522 * 18 17 16 21 21 C 1.53242 * 109.62284 * 266.95323 * 20 18 17 22 22 C 1.50621 * 109.13375 * 184.83517 * 21 20 18 23 23 O 1.21230 * 119.26944 * 208.94425 * 22 21 20 24 24 N 1.34139 * 121.37203 * 28.76716 * 22 21 20 25 25 C 1.34139 * 122.59165 * 359.63489 * 24 22 21 26 26 O 1.21220 * 119.36309 * 180.54307 * 25 24 22 27 27 C 1.50589 * 121.27497 * 0.52497 * 25 24 22 28 28 C 1.47207 * 106.59279 * 328.71611 * 17 16 14 29 29 C 1.53783 * 106.38203 * 31.28295 * 28 17 16 30 30 H 1.08997 * 111.70578 * 102.76139 * 29 28 17 31 31 H 0.97001 * 119.99712 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00128 * 359.97438 * 9 7 2 33 33 H 1.09003 * 111.06487 * 83.17021 * 12 10 9 34 34 H 1.09000 * 110.90935 * 319.46028 * 12 10 9 35 35 H 1.08997 * 110.53457 * 281.35473 * 13 12 10 36 36 H 1.09000 * 110.53840 * 158.72072 * 13 12 10 37 37 H 1.09001 * 110.07624 * 251.65409 * 16 14 13 38 38 H 1.09007 * 110.07181 * 13.18952 * 16 14 13 39 39 H 1.09005 * 109.62136 * 27.32033 * 20 18 17 40 40 H 1.09006 * 109.52183 * 304.56733 * 21 20 18 41 41 H 1.09001 * 109.52537 * 64.75372 * 21 20 18 42 42 H 0.97006 * 118.70670 * 179.61149 * 24 22 21 43 43 H 1.09005 * 109.52210 * 211.01925 * 27 25 24 44 44 H 1.09004 * 109.52185 * 90.83134 * 27 25 24 45 45 H 1.08997 * 110.07564 * 272.05329 * 28 17 16 46 46 H 1.09005 * 110.12084 * 150.53819 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 1 3.5553 -3.2322 -0.5486 12 6 4.3949 -2.9380 1.4529 13 6 5.5896 -3.9058 1.2528 14 6 6.4656 -3.2059 0.1925 15 1 7.2813 -2.6459 0.6497 16 6 6.9672 -4.2532 -0.8155 17 7 6.7234 -3.6913 -2.1542 18 6 7.4574 -3.9061 -3.2639 19 8 8.4815 -4.5525 -3.1978 20 6 7.0057 -3.3431 -4.5868 21 6 6.1681 -4.3881 -5.3317 22 6 5.8227 -3.8602 -6.6994 23 8 4.7973 -4.2245 -7.2337 24 7 6.6241 -2.9932 -7.3362 25 6 7.7674 -2.5393 -6.8014 26 8 8.4425 -1.7487 -7.4249 27 6 8.2284 -2.9926 -5.4414 28 6 5.5212 -2.8489 -2.0439 29 6 5.5168 -2.2844 -0.6134 30 1 5.8451 -1.2454 -0.5891 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.5352 -3.4624 1.8701 34 1 4.6784 -2.0955 2.0838 35 1 5.2421 -4.8712 0.8849 36 1 6.1421 -4.0291 2.1843 37 1 8.0332 -4.4298 -0.6725 38 1 6.4137 -5.1844 -0.6941 39 1 6.4079 -2.4473 -4.4184 40 1 6.7417 -5.3094 -5.4335 41 1 5.2535 -4.5873 -4.7733 42 1 6.3668 -2.6825 -8.2184 43 1 8.7906 -2.1914 -4.9616 44 1 8.8636 -3.8722 -5.5465 45 1 4.6270 -3.4492 -2.2119 46 1 5.5661 -2.0347 -2.7673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026375691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:59 Heat of formation + Delta-G solvation = -118.714040 kcal Electronic energy + Delta-G solvation = -29593.242211 eV Core-core repulsion = 25481.640650 eV Total energy + Delta-G solvation = -4111.601561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71321 -41.44728 -40.01646 -39.82342 -36.77982 -36.56205 -35.15956 -34.78700 -33.09614 -30.81638 -30.27153 -29.92319 -26.96464 -26.30510 -24.32921 -24.22940 -24.05751 -21.66933 -20.66768 -20.49520 -20.07698 -19.37560 -18.88098 -18.52313 -18.31071 -17.34172 -16.99726 -16.63988 -16.37983 -16.12511 -15.83095 -15.60814 -15.54874 -15.30076 -15.04508 -14.92769 -14.61495 -14.48216 -14.00938 -13.80182 -13.47497 -13.44551 -13.18323 -13.01849 -12.58837 -12.54826 -12.38257 -12.24967 -12.06151 -11.99688 -11.80356 -11.76871 -11.53210 -11.49295 -11.44710 -11.41009 -11.35342 -10.95009 -10.78124 -9.73823 -9.21919 -7.97462 -5.29610 0.34002 1.40740 1.41465 1.43673 1.51230 1.56859 1.67014 1.93778 2.52420 2.85123 3.12034 3.32710 3.35289 3.40922 3.48736 3.60869 3.69130 3.85223 3.89128 4.00517 4.23449 4.34157 4.38232 4.44490 4.49880 4.53806 4.61944 4.65032 4.66587 4.76753 4.82235 4.86673 4.93667 4.96544 5.08128 5.09608 5.18850 5.28846 5.42781 5.49289 5.58350 5.69023 5.84595 6.23035 6.27274 6.46054 6.68952 7.00922 7.14343 7.91773 8.08725 9.24272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003495 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.033612 B = 8008.562204 C = 9508.824994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.064 4.064 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.304 1.304 6 H -0.249 1.249 7 C -0.222 4.222 8 H 0.058 0.942 9 N -0.747 5.747 10 C 0.179 3.821 11 H 0.059 0.941 12 C -0.143 4.143 13 C -0.105 4.105 14 C -0.089 4.089 15 H 0.099 0.901 16 C 0.111 3.889 17 N -0.610 5.610 18 C 0.547 3.453 19 O -0.563 6.563 20 C -0.106 4.106 21 C -0.125 4.125 22 C 0.540 3.460 23 O -0.532 6.532 24 N -0.671 5.671 25 C 0.541 3.459 26 O -0.533 6.533 27 C -0.120 4.120 28 C 0.104 3.896 29 C -0.105 4.105 30 H 0.089 0.911 31 H 0.255 0.745 32 H 0.365 0.635 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.416 0.584 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.079 0.921 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.915 -9.696 -6.522 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.256 4.256 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.231 1.231 6 H -0.174 1.174 7 C -0.353 4.353 8 H 0.076 0.924 9 N -0.390 5.390 10 C 0.071 3.929 11 H 0.077 0.923 12 C -0.183 4.183 13 C -0.143 4.143 14 C -0.109 4.109 15 H 0.118 0.882 16 C -0.011 4.011 17 N -0.341 5.341 18 C 0.336 3.664 19 O -0.442 6.442 20 C -0.127 4.127 21 C -0.165 4.165 22 C 0.330 3.670 23 O -0.406 6.406 24 N -0.336 5.336 25 C 0.331 3.669 26 O -0.407 6.407 27 C -0.159 4.159 28 C -0.018 4.018 29 C -0.125 4.125 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.198 0.802 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.256 0.744 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.178 -10.003 -6.973 23.576 hybrid contribution -0.595 1.504 -0.299 1.645 sum 19.583 -8.499 -7.272 22.552 Atomic orbital electron populations 1.69884 1.07253 1.26434 1.60210 1.25446 0.95923 1.01057 1.03127 0.85490 0.78753 0.80003 0.77981 1.20535 1.23137 1.17353 1.19023 0.82764 0.93200 1.40313 0.92419 1.42806 1.02296 1.03945 1.89909 1.21560 0.89947 0.87028 0.94386 0.92261 1.23202 0.97741 0.98793 0.98565 1.22441 0.95115 0.97947 0.98842 1.22527 0.97705 0.95436 0.95217 0.88242 1.22273 1.02134 0.96499 0.80191 1.48638 1.28251 1.47824 1.09406 1.19841 0.82433 0.79805 0.84360 1.90728 1.24991 1.42373 1.86124 1.21444 0.97841 1.00979 0.92444 1.21892 1.04165 1.00204 0.90193 1.20995 0.81545 0.76257 0.88180 1.90833 1.25242 1.56305 1.68224 1.44855 1.22741 1.43189 1.22781 1.21049 0.78768 0.78381 0.88715 1.90808 1.53693 1.32987 1.63251 1.21829 0.98269 1.06784 0.89057 1.22371 0.87298 0.94534 0.97639 1.22804 0.95297 1.00299 0.94143 0.89237 0.93610 0.80162 0.93418 0.92546 0.90393 0.90161 0.90174 0.90033 0.86239 0.84448 0.85255 0.74368 0.85584 0.84563 0.90238 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.41 13.97 21.65 0.30 -61.11 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.95 43.13 27.73 68.60 1.90 45.03 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 7 C -0.22 -11.66 10.44 84.03 0.88 -10.78 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 9 N -0.75 -30.42 5.02 -316.89 -1.59 -32.01 16 10 C 0.18 5.44 3.04 46.27 0.14 5.58 16 11 H 0.06 1.91 7.13 -2.38 -0.02 1.89 16 12 C -0.14 -3.92 6.63 32.13 0.21 -3.71 16 13 C -0.11 -1.92 6.34 31.74 0.20 -1.72 16 14 C -0.09 -1.52 3.91 -9.44 -0.04 -1.56 16 15 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 16 C 0.11 1.78 6.56 86.50 0.57 2.35 16 17 N -0.61 -10.18 3.32 -815.16 -2.71 -12.88 16 18 C 0.55 9.09 6.92 87.66 0.61 9.70 16 19 O -0.56 -12.54 16.35 -3.03 -0.05 -12.59 16 20 C -0.11 -1.24 2.35 -11.38 -0.03 -1.27 16 21 C -0.12 -1.40 5.35 29.90 0.16 -1.24 16 22 C 0.54 8.60 7.74 87.73 0.68 9.28 16 23 O -0.53 -12.76 17.87 -2.88 -0.05 -12.81 16 24 N -0.67 -9.71 5.09 -428.60 -2.18 -11.90 16 25 C 0.54 8.36 7.74 87.72 0.68 9.04 16 26 O -0.53 -12.15 17.87 -2.84 -0.05 -12.20 16 27 C -0.12 -1.38 5.08 29.89 0.15 -1.23 16 28 C 0.10 1.89 6.31 86.51 0.55 2.43 16 29 C -0.11 -2.28 3.59 -9.44 -0.03 -2.31 16 30 H 0.09 1.98 7.84 -2.39 -0.02 1.97 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.36 14.31 5.50 -92.71 -0.51 13.80 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.30 7.19 -2.39 -0.02 1.28 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.32 7.88 -2.39 -0.02 1.30 16 38 H 0.08 1.21 7.13 -2.38 -0.02 1.19 16 39 H 0.12 1.22 6.38 -2.38 -0.02 1.20 16 40 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.42 5.74 8.79 -92.70 -0.81 4.93 16 43 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.14 1.41 7.71 -2.39 -0.02 1.39 16 45 H 0.08 1.53 7.13 -2.39 -0.02 1.51 16 46 H 0.09 1.43 6.62 -2.38 -0.02 1.41 16 Total: -1.00 -74.76 368.10 0.42 -74.34 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.35 Total: 24.71 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.19 Total: 11.42 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.18 Total: -117.90 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.15 Total: -37.60 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.03 kcal Total: -74.76 0.42 -74.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026375691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.375 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds