Wall clock time and date at job start Tue Mar 31 2020 18:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00072 * 2 1 4 4 H 1.48493 * 109.47330 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46866 * 119.99418 * 3 2 1 7 7 C 1.38814 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99691 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99827 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.43990 * 36.11679 * 10 9 7 12 12 C 1.55941 * 110.49686 * 273.55271 * 10 9 7 13 13 C 1.56398 * 105.78862 * 248.86950 * 12 10 9 14 14 C 1.50998 * 101.59431 * 25.01925 * 13 12 10 15 15 H 1.08994 * 110.05368 * 68.77013 * 14 13 12 16 16 C 1.50354 * 125.56863 * 203.97921 * 14 13 12 17 17 N 1.49212 * 104.85893 * 144.32818 * 16 14 13 18 18 C 1.34775 * 126.05648 * 172.93271 * 17 16 14 19 19 O 1.21285 * 119.99862 * 185.08960 * 18 17 16 20 20 C 1.50701 * 120.00100 * 5.08213 * 18 17 16 21 21 C 1.53245 * 109.61956 * 145.09077 * 20 18 17 22 22 C 1.50592 * 109.15913 * 175.52656 * 21 20 18 23 23 O 1.21233 * 119.35743 * 150.62804 * 22 21 20 24 24 N 1.34137 * 121.28157 * 330.90935 * 22 21 20 25 25 C 1.34143 * 122.58477 * 0.53678 * 24 22 21 26 26 O 1.21233 * 119.35502 * 179.43616 * 25 24 22 27 27 C 1.50582 * 121.28513 * 359.46451 * 25 24 22 28 28 C 1.49700 * 107.88399 * 353.19353 * 17 16 14 29 29 C 1.50293 * 110.49258 * 158.81331 * 10 9 7 30 30 H 1.09004 * 109.99621 * 199.15973 * 29 10 9 31 31 H 0.97002 * 120.00101 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99923 * 0.02562 * 9 7 2 33 33 H 1.09005 * 110.18612 * 129.78912 * 12 10 9 34 34 H 1.08990 * 110.18651 * 7.95292 * 12 10 9 35 35 H 1.09001 * 111.00540 * 266.93951 * 13 12 10 36 36 H 1.08997 * 111.03495 * 143.10562 * 13 12 10 37 37 H 1.09003 * 110.35622 * 25.48274 * 16 14 13 38 38 H 1.09000 * 110.45056 * 263.22190 * 16 14 13 39 39 H 1.09002 * 109.61388 * 24.72839 * 20 18 17 40 40 H 1.08997 * 109.52317 * 55.62233 * 21 20 18 41 41 H 1.09005 * 109.52189 * 295.43081 * 21 20 18 42 42 H 0.96997 * 118.70580 * 180.52768 * 24 22 21 43 43 H 1.08996 * 109.52274 * 269.18901 * 27 25 24 44 44 H 1.09000 * 109.52386 * 148.99308 * 27 25 24 45 45 H 1.09002 * 110.84073 * 92.79713 * 28 17 16 46 46 H 1.08999 * 110.84540 * 216.40475 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9634 -3.5742 0.5997 12 6 2.4083 -4.0837 -1.4600 13 6 1.5345 -5.3468 -1.7551 14 6 0.3829 -5.1494 -0.7986 15 1 -0.2231 -4.2999 -1.1135 16 6 -0.4996 -6.2389 -0.2555 17 7 -0.8075 -5.8203 1.1432 18 6 -1.6768 -6.4229 1.9784 19 8 -1.9121 -5.9354 3.0637 20 6 -2.3567 -7.7022 1.5636 21 6 -2.5430 -8.6060 2.7871 22 6 -3.3198 -9.8311 2.3829 23 8 -3.1366 -10.8732 2.9748 24 7 -4.2064 -9.7932 1.3769 25 6 -4.4478 -8.6801 0.6684 26 8 -5.2546 -8.7146 -0.2359 27 6 -3.7360 -7.3888 0.9739 28 6 0.0155 -4.6086 1.4521 29 6 1.1847 -4.7690 0.5073 30 1 1.8002 -5.6112 0.8237 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 3.4669 -4.3328 -1.5351 34 1 2.1594 -3.2831 -2.1564 35 1 2.0804 -6.2619 -1.5256 36 1 1.1878 -5.3500 -2.7885 37 1 0.0293 -7.1920 -0.2585 38 1 -1.4167 -6.3130 -0.8399 39 1 -1.7481 -8.2152 0.8189 40 1 -3.0908 -8.0657 3.5591 41 1 -1.5675 -8.9037 3.1719 42 1 -4.6918 -10.6026 1.1530 43 1 -4.3178 -6.8137 1.6941 44 1 -3.6174 -6.8123 0.0565 45 1 -0.5402 -3.6965 1.2343 46 1 0.3507 -4.6215 2.4892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026375693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:06 Heat of formation + Delta-G solvation = -78.947896 kcal Electronic energy + Delta-G solvation = -29529.804091 eV Core-core repulsion = 25419.926919 eV Total energy + Delta-G solvation = -4109.877172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99215 -40.61673 -39.24163 -38.96219 -35.81244 -35.36085 -34.18123 -33.38267 -30.93248 -29.74000 -29.29036 -28.60778 -25.94779 -25.12665 -23.63903 -23.40571 -22.78411 -20.13924 -19.81569 -19.33524 -18.91402 -18.18001 -17.77944 -17.51107 -17.26616 -16.30332 -16.09139 -15.51345 -15.10771 -14.98542 -14.84112 -14.72189 -14.46164 -14.31706 -14.19578 -13.70648 -13.64007 -12.95490 -12.82136 -12.79302 -12.44720 -12.02404 -11.88279 -11.75497 -11.59004 -11.33590 -11.20135 -11.01820 -10.86496 -10.72552 -10.70231 -10.64042 -10.56709 -10.32994 -10.16603 -9.91744 -9.69478 -9.65192 -8.96583 -8.70672 -7.03449 -5.82920 -3.12196 1.03497 2.24461 2.31066 2.36592 2.73356 3.40438 3.45582 3.46292 3.50266 3.85291 4.00908 4.06200 4.17923 4.46746 4.54340 4.59588 4.82264 4.90332 4.99268 5.08990 5.20403 5.22610 5.31477 5.35889 5.43339 5.49930 5.54817 5.55821 5.68485 5.74967 5.82312 5.91845 6.01046 6.14665 6.19053 6.28895 6.34434 6.35006 6.45554 6.58245 6.74420 6.88621 6.98701 7.35138 7.40221 7.65507 7.96245 8.35558 9.47012 10.02403 10.36723 11.39360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002616 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.589833 B =10702.245553 C =10996.910633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.194 3.806 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.095 4.095 14 C -0.129 4.129 15 H 0.092 0.908 16 C 0.117 3.883 17 N -0.619 5.619 18 C 0.537 3.463 19 O -0.533 6.533 20 C -0.109 4.109 21 C -0.128 4.128 22 C 0.530 3.470 23 O -0.500 6.500 24 N -0.676 5.676 25 C 0.532 3.468 26 O -0.497 6.497 27 C -0.133 4.133 28 C 0.130 3.870 29 C -0.120 4.120 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.413 0.587 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -19.188 -0.118 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.186 4.186 13 C -0.133 4.133 14 C -0.148 4.148 15 H 0.110 0.890 16 C -0.004 4.004 17 N -0.353 5.353 18 C 0.323 3.677 19 O -0.410 6.410 20 C -0.131 4.131 21 C -0.168 4.168 22 C 0.319 3.681 23 O -0.372 6.372 24 N -0.342 5.342 25 C 0.320 3.680 26 O -0.369 6.369 27 C -0.173 4.173 28 C 0.010 3.990 29 C -0.140 4.140 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.106 0.894 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.065 -19.162 0.435 19.593 hybrid contribution -0.047 0.590 -0.282 0.655 sum -4.112 -18.573 0.153 19.023 Atomic orbital electron populations 1.69631 1.05098 1.25904 1.57364 1.24730 0.95480 0.97682 1.02773 0.86290 0.78552 0.83620 0.77833 1.21301 1.21743 1.21262 1.19180 0.91003 0.84047 1.43112 0.91168 1.42428 1.05655 0.99568 1.88353 1.20135 0.93680 0.85217 0.92704 0.92733 1.23863 0.97895 0.96358 1.00531 1.21696 0.94995 0.98731 0.97865 1.22236 0.96746 0.98582 0.97245 0.89007 1.21353 0.99322 0.98029 0.81746 1.49903 1.41379 1.30105 1.13927 1.19568 0.79021 0.84827 0.84240 1.90758 1.62486 1.65578 1.22156 1.21455 0.97080 0.95742 0.98844 1.21854 1.03335 0.92579 0.98994 1.20887 0.78324 0.90918 0.77947 1.90811 1.63643 1.31870 1.50874 1.44887 1.40710 1.15348 1.33235 1.20778 0.81633 0.85201 0.80370 1.90824 1.32896 1.84700 1.28462 1.21897 0.94654 0.94877 1.05857 1.21586 0.90880 0.87015 0.99538 1.22518 0.95997 1.00645 0.94829 0.90582 0.93391 0.78140 0.92838 0.90481 0.92053 0.91985 0.91234 0.90967 0.87633 0.85384 0.86204 0.74724 0.85826 0.85966 0.89427 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.87 13.06 55.49 0.72 -26.14 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.16 4.84 -53.21 -0.26 -16.42 16 10 C 0.19 3.35 3.44 -67.71 -0.23 3.12 16 11 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 12 C -0.15 -2.19 6.73 -23.33 -0.16 -2.35 16 13 C -0.09 -1.10 6.72 -25.91 -0.17 -1.27 16 14 C -0.13 -1.57 2.73 -90.26 -0.25 -1.82 16 15 H 0.09 1.37 7.67 -51.93 -0.40 0.97 16 16 C 0.12 1.12 5.93 -3.86 -0.02 1.09 16 17 N -0.62 -7.34 3.42 -171.40 -0.59 -7.92 16 18 C 0.54 6.15 6.90 -10.99 -0.08 6.07 16 19 O -0.53 -8.09 16.56 5.55 0.09 -8.00 16 20 C -0.11 -0.80 2.30 -91.52 -0.21 -1.01 16 21 C -0.13 -0.91 5.10 -27.81 -0.14 -1.05 16 22 C 0.53 4.27 7.74 -11.32 -0.09 4.18 16 23 O -0.50 -5.68 17.88 5.60 0.10 -5.58 16 24 N -0.68 -4.80 5.09 -11.75 -0.06 -4.86 16 25 C 0.53 4.27 7.74 -11.33 -0.09 4.18 16 26 O -0.50 -5.68 17.88 5.60 0.10 -5.58 16 27 C -0.13 -0.92 5.35 -27.82 -0.15 -1.07 16 28 C 0.13 1.94 6.51 -3.18 -0.02 1.92 16 29 C -0.12 -1.67 2.61 -90.20 -0.24 -1.91 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.38 9.19 6.09 -40.82 -0.25 8.94 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.59 7.20 -51.93 -0.37 0.22 16 40 H 0.13 0.93 7.72 -51.93 -0.40 0.53 16 41 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.41 2.61 8.79 -40.82 -0.36 2.25 16 43 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.56 6.88 -51.93 -0.36 1.20 16 46 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -32.83 372.78 -8.12 -40.95 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.74 Total: 8.07 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.09 Total: 3.28 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.18 Total: -55.35 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.29 Total: -19.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.83 -8.12 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026375693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.994 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds