Wall clock time and date at job start Tue Mar 31 2020 18:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00072 * 2 1 4 4 H 1.48493 * 109.47330 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46866 * 119.99418 * 3 2 1 7 7 C 1.38814 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99691 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99827 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.43990 * 36.11679 * 10 9 7 12 12 C 1.55941 * 110.49686 * 273.55271 * 10 9 7 13 13 C 1.56398 * 105.78862 * 248.86950 * 12 10 9 14 14 C 1.50998 * 101.59431 * 25.01925 * 13 12 10 15 15 H 1.08994 * 110.05368 * 68.77013 * 14 13 12 16 16 C 1.50354 * 125.56863 * 203.97921 * 14 13 12 17 17 N 1.49212 * 104.85893 * 144.32818 * 16 14 13 18 18 C 1.34775 * 126.05648 * 172.93271 * 17 16 14 19 19 O 1.21285 * 119.99862 * 185.08960 * 18 17 16 20 20 C 1.50701 * 120.00100 * 5.08213 * 18 17 16 21 21 C 1.53245 * 109.61956 * 145.09077 * 20 18 17 22 22 C 1.50592 * 109.15913 * 175.52656 * 21 20 18 23 23 O 1.21233 * 119.35743 * 150.62804 * 22 21 20 24 24 N 1.34137 * 121.28157 * 330.90935 * 22 21 20 25 25 C 1.34143 * 122.58477 * 0.53678 * 24 22 21 26 26 O 1.21233 * 119.35502 * 179.43616 * 25 24 22 27 27 C 1.50582 * 121.28513 * 359.46451 * 25 24 22 28 28 C 1.49700 * 107.88399 * 353.19353 * 17 16 14 29 29 C 1.50293 * 110.49258 * 158.81331 * 10 9 7 30 30 H 1.09004 * 109.99621 * 199.15973 * 29 10 9 31 31 H 0.97002 * 120.00101 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99923 * 0.02562 * 9 7 2 33 33 H 1.09005 * 110.18612 * 129.78912 * 12 10 9 34 34 H 1.08990 * 110.18651 * 7.95292 * 12 10 9 35 35 H 1.09001 * 111.00540 * 266.93951 * 13 12 10 36 36 H 1.08997 * 111.03495 * 143.10562 * 13 12 10 37 37 H 1.09003 * 110.35622 * 25.48274 * 16 14 13 38 38 H 1.09000 * 110.45056 * 263.22190 * 16 14 13 39 39 H 1.09002 * 109.61388 * 24.72839 * 20 18 17 40 40 H 1.08997 * 109.52317 * 55.62233 * 21 20 18 41 41 H 1.09005 * 109.52189 * 295.43081 * 21 20 18 42 42 H 0.96997 * 118.70580 * 180.52768 * 24 22 21 43 43 H 1.08996 * 109.52274 * 269.18901 * 27 25 24 44 44 H 1.09000 * 109.52386 * 148.99308 * 27 25 24 45 45 H 1.09002 * 110.84073 * 92.79713 * 28 17 16 46 46 H 1.08999 * 110.84540 * 216.40475 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9634 -3.5742 0.5997 12 6 2.4083 -4.0837 -1.4600 13 6 1.5345 -5.3468 -1.7551 14 6 0.3829 -5.1494 -0.7986 15 1 -0.2231 -4.2999 -1.1135 16 6 -0.4996 -6.2389 -0.2555 17 7 -0.8075 -5.8203 1.1432 18 6 -1.6768 -6.4229 1.9784 19 8 -1.9121 -5.9354 3.0637 20 6 -2.3567 -7.7022 1.5636 21 6 -2.5430 -8.6060 2.7871 22 6 -3.3198 -9.8311 2.3829 23 8 -3.1366 -10.8732 2.9748 24 7 -4.2064 -9.7932 1.3769 25 6 -4.4478 -8.6801 0.6684 26 8 -5.2546 -8.7146 -0.2359 27 6 -3.7360 -7.3888 0.9739 28 6 0.0155 -4.6086 1.4521 29 6 1.1847 -4.7690 0.5073 30 1 1.8002 -5.6112 0.8237 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 3.4669 -4.3328 -1.5351 34 1 2.1594 -3.2831 -2.1564 35 1 2.0804 -6.2619 -1.5256 36 1 1.1878 -5.3500 -2.7885 37 1 0.0293 -7.1920 -0.2585 38 1 -1.4167 -6.3130 -0.8399 39 1 -1.7481 -8.2152 0.8189 40 1 -3.0908 -8.0657 3.5591 41 1 -1.5675 -8.9037 3.1719 42 1 -4.6918 -10.6026 1.1530 43 1 -4.3178 -6.8137 1.6941 44 1 -3.6174 -6.8123 0.0565 45 1 -0.5402 -3.6965 1.2343 46 1 0.3507 -4.6215 2.4892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026375693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:05 Heat of formation + Delta-G solvation = -103.125727 kcal Electronic energy + Delta-G solvation = -29530.852520 eV Core-core repulsion = 25419.926919 eV Total energy + Delta-G solvation = -4110.925601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.69430 -41.64291 -39.99986 -39.96929 -36.68834 -36.55127 -35.05514 -34.81444 -32.56220 -30.83337 -29.96164 -29.86028 -27.15839 -26.09036 -25.14426 -24.29416 -23.84739 -21.12226 -20.48712 -20.31136 -20.08161 -19.40428 -18.84582 -18.42039 -18.13201 -17.32899 -16.99481 -16.72095 -16.20489 -15.91357 -15.74316 -15.68213 -15.51394 -15.48168 -15.06885 -14.91309 -14.81442 -14.49927 -13.80656 -13.57907 -13.50471 -13.20236 -13.11086 -12.83937 -12.61262 -12.51128 -12.39591 -12.27227 -12.23417 -12.04504 -11.97294 -11.76850 -11.45929 -11.41837 -11.38500 -11.37286 -10.97668 -10.84598 -10.75331 -9.71099 -8.93925 -7.91033 -5.17526 0.36240 1.45976 1.48633 1.50273 1.56136 1.56906 1.66779 1.87769 2.58730 2.86564 2.99037 3.23130 3.40698 3.43503 3.47060 3.80132 3.85464 3.94487 4.01452 4.07634 4.28468 4.33724 4.38124 4.47574 4.51452 4.53282 4.65683 4.67352 4.75155 4.77138 4.82405 4.88648 4.97130 5.00322 5.09069 5.10117 5.25359 5.27238 5.44168 5.49041 5.58402 5.71312 5.72617 6.24393 6.32100 6.48938 6.72240 7.04442 7.38531 8.16942 8.38000 9.32059 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002616 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.589833 B =10702.245553 C =10996.910633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.730 5.730 10 C 0.181 3.819 11 H 0.046 0.954 12 C -0.141 4.141 13 C -0.080 4.080 14 C -0.115 4.115 15 H 0.055 0.945 16 C 0.119 3.881 17 N -0.617 5.617 18 C 0.537 3.463 19 O -0.576 6.576 20 C -0.093 4.093 21 C -0.124 4.124 22 C 0.545 3.455 23 O -0.531 6.531 24 N -0.668 5.668 25 C 0.546 3.454 26 O -0.529 6.529 27 C -0.130 4.130 28 C 0.133 3.867 29 C -0.119 4.119 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.373 0.627 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.418 0.582 43 H 0.126 0.874 44 H 0.132 0.868 45 H 0.047 0.953 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -21.892 -1.105 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.371 5.371 10 C 0.072 3.928 11 H 0.064 0.936 12 C -0.181 4.181 13 C -0.118 4.118 14 C -0.134 4.134 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.351 5.351 18 C 0.326 3.674 19 O -0.456 6.456 20 C -0.115 4.115 21 C -0.163 4.163 22 C 0.335 3.665 23 O -0.406 6.406 24 N -0.333 5.333 25 C 0.336 3.664 26 O -0.403 6.403 27 C -0.170 4.170 28 C 0.011 3.989 29 C -0.139 4.139 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.258 0.742 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.065 0.935 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.025 -21.923 -0.581 22.139 hybrid contribution -0.309 1.414 0.067 1.449 sum -3.334 -20.509 -0.514 20.785 Atomic orbital electron populations 1.69790 1.06466 1.25817 1.59956 1.25448 0.96227 1.00756 1.04299 0.85327 0.77218 0.79866 0.78056 1.20474 1.22680 1.20733 1.19570 0.91386 0.85351 1.40264 0.90728 1.42598 1.05375 1.00694 1.88384 1.20443 0.93627 0.84228 0.94538 0.93616 1.23668 0.99806 0.97271 0.97398 1.21638 0.93910 0.97959 0.98310 1.22166 0.96593 0.98571 0.96111 0.92640 1.21573 1.00314 0.98283 0.79981 1.49921 1.41051 1.28929 1.15176 1.20218 0.78264 0.85535 0.83422 1.90748 1.63712 1.66951 1.24147 1.21391 0.97139 0.93404 0.99533 1.21835 1.03653 0.91943 0.98904 1.20889 0.77814 0.90470 0.77304 1.90814 1.64710 1.33084 1.51953 1.44799 1.40301 1.15475 1.32712 1.20793 0.80807 0.85303 0.79474 1.90828 1.34438 1.85072 1.29984 1.21905 0.94291 0.94388 1.06394 1.21252 0.91469 0.87184 0.98973 1.22366 0.95800 0.99890 0.95845 0.87730 0.94294 0.79364 0.91118 0.93894 0.88571 0.90804 0.87269 0.88623 0.84586 0.85535 0.85398 0.74168 0.85610 0.84991 0.93456 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.23 -12.38 9.97 84.03 0.84 -11.54 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.73 -33.96 4.84 -322.26 -1.56 -35.52 16 10 C 0.18 6.21 3.44 45.14 0.16 6.37 16 11 H 0.05 1.63 8.11 -2.38 -0.02 1.61 16 12 C -0.14 -4.03 6.73 32.80 0.22 -3.81 16 13 C -0.08 -1.56 6.72 31.13 0.21 -1.35 16 14 C -0.12 -2.53 2.73 -10.56 -0.03 -2.56 16 15 H 0.06 1.64 7.67 -2.39 -0.02 1.62 16 16 C 0.12 1.77 5.93 85.00 0.50 2.27 16 17 N -0.62 -13.42 3.42 -814.58 -2.79 -16.20 16 18 C 0.54 11.28 6.90 87.66 0.60 11.89 16 19 O -0.58 -17.30 16.56 -3.04 -0.05 -17.35 16 20 C -0.09 -1.06 2.30 -11.38 -0.03 -1.09 16 21 C -0.12 -1.45 5.10 29.90 0.15 -1.30 16 22 C 0.55 7.49 7.74 87.72 0.68 8.17 16 23 O -0.53 -11.11 17.88 -2.89 -0.05 -11.17 16 24 N -0.67 -7.93 5.09 -428.62 -2.18 -10.12 16 25 C 0.55 7.44 7.74 87.72 0.68 8.12 16 26 O -0.53 -11.08 17.88 -2.88 -0.05 -11.14 16 27 C -0.13 -1.46 5.35 29.89 0.16 -1.30 16 28 C 0.13 4.02 6.51 85.16 0.55 4.58 16 29 C -0.12 -3.17 2.61 -10.52 -0.03 -3.20 16 30 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.37 18.85 6.09 -92.71 -0.56 18.29 16 33 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.04 1.52 7.98 -2.39 -0.02 1.50 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 0.91 8.05 -2.39 -0.02 0.89 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.14 0.79 7.20 -2.39 -0.02 0.78 16 40 H 0.13 1.62 7.72 -2.39 -0.02 1.60 16 41 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.42 4.45 8.79 -92.71 -0.81 3.63 16 43 H 0.13 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.80 6.88 -2.39 -0.02 1.79 16 46 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 Total: -1.00 -75.43 372.78 0.41 -75.02 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.36 Total: 25.38 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.14 Total: 11.51 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.25 Total: -119.73 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.15 Total: -39.65 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.43 0.41 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026375693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.108 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds