Wall clock time and date at job start Tue Mar 31 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47437 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.47086 * 150.00410 * 3 2 1 7 7 C 1.38809 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00214 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.54603 * 36.17486 * 10 9 7 12 12 C 1.55941 * 110.49402 * 273.54429 * 10 9 7 13 13 C 1.56399 * 105.85497 * 233.82857 * 12 10 9 14 14 C 1.50998 * 101.59648 * 334.94450 * 13 12 10 15 15 H 1.09006 * 110.04535 * 291.22905 * 14 13 12 16 16 C 1.50346 * 125.57307 * 156.02658 * 14 13 12 17 17 N 1.49219 * 104.85995 * 215.67175 * 16 14 13 18 18 C 1.34768 * 126.05509 * 187.06474 * 17 16 14 19 19 O 1.21287 * 119.99630 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00398 * 359.97171 * 18 17 16 21 21 N 1.46498 * 109.47044 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76392 * 269.70626 * 21 20 18 23 23 O 1.21227 * 125.39815 * 359.97438 * 22 21 20 24 24 C 1.51318 * 109.20799 * 179.84595 * 22 21 20 25 25 C 1.54231 * 103.55212 * 0.38890 * 24 22 21 26 26 C 1.33885 * 122.76209 * 90.00430 * 21 20 18 27 27 O 1.21224 * 125.39489 * 0.02562 * 26 21 20 28 28 C 1.49700 * 107.88258 * 7.06059 * 17 16 14 29 29 C 1.50459 * 110.55760 * 158.86052 * 10 9 7 30 30 H 1.09006 * 109.45818 * 38.30034 * 29 10 9 31 31 H 0.97003 * 119.99895 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99817 * 359.97438 * 9 7 2 33 33 H 1.09002 * 110.18781 * 114.70971 * 12 10 9 34 34 H 1.09003 * 110.18347 * 352.94645 * 12 10 9 35 35 H 1.09003 * 111.00179 * 93.01647 * 13 12 10 36 36 H 1.08998 * 111.00428 * 216.86294 * 13 12 10 37 37 H 1.09004 * 110.35729 * 334.51179 * 16 14 13 38 38 H 1.08994 * 110.36004 * 96.71315 * 16 14 13 39 39 H 1.08997 * 109.46847 * 300.00148 * 20 18 17 40 40 H 1.08998 * 109.47233 * 60.00383 * 20 18 17 41 41 H 1.08996 * 110.79660 * 241.78109 * 24 22 21 42 42 H 1.08996 * 110.54892 * 118.87388 * 24 22 21 43 43 H 1.09000 * 110.60689 * 241.25899 * 25 24 22 44 44 H 1.09004 * 110.74048 * 118.35833 * 25 24 22 45 45 H 1.08998 * 110.84301 * 143.33060 * 28 17 16 46 46 H 1.08995 * 110.84478 * 266.74286 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5896 -3.2143 -0.6032 12 6 4.3075 -2.9885 1.4569 13 6 5.8432 -3.2349 1.6206 14 6 6.2672 -3.4697 0.1905 15 1 5.8604 -4.4148 -0.1694 16 6 7.6524 -3.2631 -0.3563 17 7 7.4443 -2.7528 -1.7430 18 6 8.4048 -2.5517 -2.6666 19 8 8.1107 -2.1315 -3.7657 20 6 9.8442 -2.8489 -2.3340 21 7 10.6855 -2.5506 -3.4956 22 6 10.9733 -3.4603 -4.4346 23 8 10.5864 -4.6092 -4.4412 24 6 11.8553 -2.8265 -5.4882 25 6 12.0376 -1.3802 -4.9846 26 6 11.2347 -1.3472 -3.7024 27 8 11.1091 -0.3840 -2.9772 28 6 5.9795 -2.5040 -1.9262 29 6 5.5140 -2.2715 -0.5097 30 1 5.9027 -1.3222 -0.1407 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.7595 -3.9195 1.6021 34 1 3.9688 -2.2378 2.1710 35 1 6.3378 -2.3566 2.0355 36 1 6.0344 -4.1153 2.2343 37 1 8.1903 -2.5275 0.2418 38 1 8.1971 -4.2069 -0.3754 39 1 10.1568 -2.2332 -1.4907 40 1 9.9468 -3.9021 -2.0726 41 1 11.3636 -2.8350 -6.4608 42 1 12.8163 -3.3382 -5.5409 43 1 11.6365 -0.6691 -5.7067 44 1 13.0884 -1.1706 -4.7846 45 1 5.8102 -1.6195 -2.5402 46 1 5.4895 -3.3753 -2.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026416043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:12 Heat of formation + Delta-G solvation = -56.354446 kcal Electronic energy + Delta-G solvation = -29320.029219 eV Core-core repulsion = 25211.131773 eV Total energy + Delta-G solvation = -4108.897446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32080 -40.61781 -38.92308 -38.71836 -36.18553 -35.52619 -33.89278 -33.49795 -31.21765 -30.33304 -28.90465 -27.84231 -26.60505 -25.66007 -23.44623 -22.79852 -22.55893 -20.56820 -20.39728 -19.32563 -19.25439 -17.93221 -17.69278 -17.49865 -16.88619 -16.59396 -16.34122 -15.52214 -15.14027 -14.81224 -14.76565 -14.57570 -14.36475 -14.29430 -14.09658 -13.89330 -13.65578 -13.22062 -13.06733 -12.76128 -12.65512 -12.41032 -12.03087 -11.98809 -11.83945 -11.61540 -11.23326 -11.08447 -10.90912 -10.84648 -10.72933 -10.51873 -10.44091 -10.41365 -10.08709 -9.91598 -9.71768 -9.59011 -8.96095 -8.81957 -7.30404 -5.79288 -3.15487 1.14811 1.87968 2.31392 2.39322 2.79640 3.36650 3.40288 3.45255 3.63100 3.76481 3.91160 3.96986 4.24478 4.40153 4.55960 4.57441 4.70872 4.74849 4.88843 4.95911 4.97052 5.09824 5.12494 5.15769 5.18683 5.28082 5.40991 5.48690 5.56303 5.64958 5.73349 5.81746 5.90280 5.98851 6.03037 6.13342 6.18440 6.31267 6.36721 6.48775 6.67468 6.91192 6.91238 7.26858 7.37048 7.90499 7.96495 8.39901 9.17486 9.90188 10.09068 11.38885 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002740 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.046376 B =10215.473272 C =11034.184932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.202 3.798 11 H 0.063 0.937 12 C -0.142 4.142 13 C -0.097 4.097 14 C -0.127 4.127 15 H 0.086 0.914 16 C 0.116 3.884 17 N -0.621 5.621 18 C 0.518 3.482 19 O -0.534 6.534 20 C 0.084 3.916 21 N -0.560 5.560 22 C 0.532 3.468 23 O -0.480 6.480 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.530 3.470 27 O -0.478 6.478 28 C 0.130 3.870 29 C -0.124 4.124 30 H 0.080 0.920 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.547 -8.595 -5.181 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.387 5.387 10 C 0.091 3.909 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.146 4.146 15 H 0.104 0.896 16 C -0.005 4.005 17 N -0.357 5.357 18 C 0.305 3.695 19 O -0.411 6.411 20 C -0.041 4.041 21 N -0.303 5.303 22 C 0.321 3.679 23 O -0.351 6.351 24 C -0.193 4.193 25 C -0.194 4.194 26 C 0.320 3.680 27 O -0.349 6.349 28 C 0.009 3.991 29 C -0.144 4.144 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.101 0.899 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.901 -8.505 -5.456 29.674 hybrid contribution 0.385 1.237 0.188 1.309 sum 28.286 -7.269 -5.268 29.677 Atomic orbital electron populations 1.69699 1.05107 1.25861 1.57342 1.24669 0.95211 0.97186 1.01904 0.86584 0.79167 0.85081 0.77874 1.21036 1.21725 1.20377 1.19063 0.80502 0.94715 1.43204 0.89112 1.42856 1.04103 1.01754 1.89951 1.20089 0.88127 0.89544 0.93128 0.91867 1.23755 0.93029 1.01362 1.00172 1.21758 0.97389 1.01031 0.93388 1.22174 0.94134 1.00114 0.98208 0.89606 1.21365 0.97980 0.99029 0.82163 1.49806 1.07792 1.64799 1.13271 1.20250 0.86732 0.78284 0.84278 1.90732 1.82726 1.45725 1.21933 1.21542 0.88438 1.05249 0.88910 1.46347 1.45288 1.14379 1.24266 1.20843 0.79682 0.84966 0.82435 1.90789 1.52662 1.16469 1.75175 1.22448 1.02023 0.95157 0.99696 1.22455 1.02977 0.98400 0.95527 1.20859 0.78509 0.81144 0.87531 1.90801 1.59225 1.34266 1.50570 1.21535 0.78161 1.02099 0.97272 1.22572 0.98690 0.98868 0.94262 0.90148 0.93026 0.80547 0.92153 0.90640 0.91604 0.91823 0.90899 0.90746 0.85910 0.85908 0.85855 0.86021 0.85882 0.85988 0.89925 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.20 27.73 -169.99 -4.71 17.48 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -17.02 4.93 -53.13 -0.26 -17.28 16 10 C 0.20 3.60 3.40 -67.63 -0.23 3.37 16 11 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 12 C -0.14 -2.20 6.73 -23.33 -0.16 -2.36 16 13 C -0.10 -1.12 6.72 -25.91 -0.17 -1.29 16 14 C -0.13 -1.42 2.77 -90.27 -0.25 -1.67 16 15 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.12 1.13 6.41 -3.86 -0.02 1.10 16 17 N -0.62 -8.10 3.43 -171.56 -0.59 -8.69 16 18 C 0.52 7.31 7.95 -10.99 -0.09 7.22 16 19 O -0.53 -9.63 16.76 5.55 0.09 -9.54 16 20 C 0.08 0.84 5.27 -5.20 -0.03 0.82 16 21 N -0.56 -5.62 2.04 -116.63 -0.24 -5.86 16 22 C 0.53 4.99 8.08 -11.08 -0.09 4.90 16 23 O -0.48 -6.10 17.47 5.60 0.10 -6.00 16 24 C -0.15 -0.66 7.03 -26.94 -0.19 -0.85 16 25 C -0.15 -0.69 7.03 -26.94 -0.19 -0.88 16 26 C 0.53 5.13 8.08 -11.08 -0.09 5.04 16 27 O -0.48 -6.36 17.48 5.61 0.10 -6.26 16 28 C 0.13 1.94 6.81 -3.31 -0.02 1.91 16 29 C -0.12 -1.83 2.42 -90.26 -0.22 -2.05 16 30 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.27 5.50 -40.82 -0.22 8.04 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.12 1.04 7.83 -51.93 -0.41 0.63 16 40 H 0.12 0.99 7.82 -51.93 -0.41 0.59 16 41 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -37.83 378.35 -7.98 -45.82 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.94 Total: 4.56 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -2.00 Total: 8.44 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.31 Total: -60.21 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.29 Total: -21.80 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.83 -7.98 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.537 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds