Wall clock time and date at job start Tue Mar 31 2020 18:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47437 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.47086 * 150.00410 * 3 2 1 7 7 C 1.38809 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00214 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00072 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.54603 * 36.17486 * 10 9 7 12 12 C 1.55941 * 110.49402 * 273.54429 * 10 9 7 13 13 C 1.56399 * 105.85497 * 233.82857 * 12 10 9 14 14 C 1.50998 * 101.59648 * 334.94450 * 13 12 10 15 15 H 1.09006 * 110.04535 * 291.22905 * 14 13 12 16 16 C 1.50346 * 125.57307 * 156.02658 * 14 13 12 17 17 N 1.49219 * 104.85995 * 215.67175 * 16 14 13 18 18 C 1.34768 * 126.05509 * 187.06474 * 17 16 14 19 19 O 1.21287 * 119.99630 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00398 * 359.97171 * 18 17 16 21 21 N 1.46498 * 109.47044 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76392 * 269.70626 * 21 20 18 23 23 O 1.21227 * 125.39815 * 359.97438 * 22 21 20 24 24 C 1.51318 * 109.20799 * 179.84595 * 22 21 20 25 25 C 1.54231 * 103.55212 * 0.38890 * 24 22 21 26 26 C 1.33885 * 122.76209 * 90.00430 * 21 20 18 27 27 O 1.21224 * 125.39489 * 0.02562 * 26 21 20 28 28 C 1.49700 * 107.88258 * 7.06059 * 17 16 14 29 29 C 1.50459 * 110.55760 * 158.86052 * 10 9 7 30 30 H 1.09006 * 109.45818 * 38.30034 * 29 10 9 31 31 H 0.97003 * 119.99895 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99817 * 359.97438 * 9 7 2 33 33 H 1.09002 * 110.18781 * 114.70971 * 12 10 9 34 34 H 1.09003 * 110.18347 * 352.94645 * 12 10 9 35 35 H 1.09003 * 111.00179 * 93.01647 * 13 12 10 36 36 H 1.08998 * 111.00428 * 216.86294 * 13 12 10 37 37 H 1.09004 * 110.35729 * 334.51179 * 16 14 13 38 38 H 1.08994 * 110.36004 * 96.71315 * 16 14 13 39 39 H 1.08997 * 109.46847 * 300.00148 * 20 18 17 40 40 H 1.08998 * 109.47233 * 60.00383 * 20 18 17 41 41 H 1.08996 * 110.79660 * 241.78109 * 24 22 21 42 42 H 1.08996 * 110.54892 * 118.87388 * 24 22 21 43 43 H 1.09000 * 110.60689 * 241.25899 * 25 24 22 44 44 H 1.09004 * 110.74048 * 118.35833 * 25 24 22 45 45 H 1.08998 * 110.84301 * 143.33060 * 28 17 16 46 46 H 1.08995 * 110.84478 * 266.74286 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5896 -3.2143 -0.6032 12 6 4.3075 -2.9885 1.4569 13 6 5.8432 -3.2349 1.6206 14 6 6.2672 -3.4697 0.1905 15 1 5.8604 -4.4148 -0.1694 16 6 7.6524 -3.2631 -0.3563 17 7 7.4443 -2.7528 -1.7430 18 6 8.4048 -2.5517 -2.6666 19 8 8.1107 -2.1315 -3.7657 20 6 9.8442 -2.8489 -2.3340 21 7 10.6855 -2.5506 -3.4956 22 6 10.9733 -3.4603 -4.4346 23 8 10.5864 -4.6092 -4.4412 24 6 11.8553 -2.8265 -5.4882 25 6 12.0376 -1.3802 -4.9846 26 6 11.2347 -1.3472 -3.7024 27 8 11.1091 -0.3840 -2.9772 28 6 5.9795 -2.5040 -1.9262 29 6 5.5140 -2.2715 -0.5097 30 1 5.9027 -1.3222 -0.1407 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.7595 -3.9195 1.6021 34 1 3.9688 -2.2378 2.1710 35 1 6.3378 -2.3566 2.0355 36 1 6.0344 -4.1153 2.2343 37 1 8.1903 -2.5275 0.2418 38 1 8.1971 -4.2069 -0.3754 39 1 10.1568 -2.2332 -1.4907 40 1 9.9468 -3.9021 -2.0726 41 1 11.3636 -2.8350 -6.4608 42 1 12.8163 -3.3382 -5.5409 43 1 11.6365 -0.6691 -5.7067 44 1 13.0884 -1.1706 -4.7846 45 1 5.8102 -1.6195 -2.5402 46 1 5.4895 -3.3753 -2.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026416043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:11 Heat of formation + Delta-G solvation = -84.128652 kcal Electronic energy + Delta-G solvation = -29321.233599 eV Core-core repulsion = 25211.131773 eV Total energy + Delta-G solvation = -4110.101826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.01763 -41.71345 -39.86486 -39.70649 -37.03972 -36.89607 -35.18267 -34.45505 -33.11712 -31.41298 -30.17744 -28.70305 -27.14568 -27.08204 -24.70781 -24.26915 -23.37189 -21.61450 -21.37477 -20.62207 -20.13438 -19.61795 -18.65643 -18.47269 -17.63543 -17.49636 -17.37803 -16.70916 -16.40148 -16.03156 -15.89243 -15.66204 -15.32376 -15.15451 -15.07187 -14.94064 -14.56827 -14.52455 -14.36494 -13.78493 -13.57561 -13.55807 -13.39781 -13.24374 -13.11793 -12.70489 -12.38434 -12.33340 -12.16178 -12.12744 -11.86450 -11.81268 -11.70161 -11.60086 -11.44524 -11.16158 -11.07300 -11.00966 -10.73141 -9.88756 -9.32509 -8.04985 -5.37512 0.46428 1.14356 1.33243 1.34408 1.36487 1.42772 1.64884 1.88786 2.44600 2.85983 3.17734 3.23229 3.26966 3.32635 3.48610 3.61035 3.79572 3.87854 3.93876 4.02482 4.10443 4.17084 4.19255 4.22781 4.37879 4.43530 4.49928 4.61061 4.63103 4.71180 4.74533 4.85675 4.87140 4.88557 4.90326 4.95357 5.09912 5.20990 5.31031 5.49121 5.51569 5.70393 5.76862 6.20203 6.24621 6.26995 6.64590 6.85122 7.05321 7.82462 7.99674 9.16667 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002740 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.046376 B =10215.473272 C =11034.184932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.949 3.051 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.224 4.224 8 H 0.060 0.940 9 N -0.750 5.750 10 C 0.190 3.810 11 H 0.048 0.952 12 C -0.139 4.139 13 C -0.082 4.082 14 C -0.105 4.105 15 H 0.091 0.909 16 C 0.116 3.884 17 N -0.620 5.620 18 C 0.509 3.491 19 O -0.585 6.585 20 C 0.085 3.915 21 N -0.568 5.568 22 C 0.523 3.477 23 O -0.521 6.521 24 C -0.140 4.140 25 C -0.141 4.141 26 C 0.521 3.479 27 O -0.523 6.523 28 C 0.130 3.870 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.257 0.743 32 H 0.363 0.637 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.135 0.865 44 H 0.157 0.843 45 H 0.052 0.948 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.066 -9.380 -4.808 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.777 3.223 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.178 1.178 7 C -0.355 4.355 8 H 0.078 0.922 9 N -0.393 5.393 10 C 0.081 3.919 11 H 0.066 0.934 12 C -0.179 4.179 13 C -0.120 4.120 14 C -0.124 4.124 15 H 0.110 0.890 16 C -0.004 4.004 17 N -0.354 5.354 18 C 0.297 3.703 19 O -0.466 6.466 20 C -0.040 4.040 21 N -0.311 5.311 22 C 0.315 3.685 23 O -0.395 6.395 24 C -0.179 4.179 25 C -0.180 4.180 26 C 0.313 3.687 27 O -0.397 6.397 28 C 0.008 3.992 29 C -0.146 4.146 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.175 0.825 45 H 0.070 0.930 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 32.500 -9.343 -5.054 34.191 hybrid contribution -1.084 1.350 0.046 1.731 sum 31.416 -7.993 -5.008 32.801 Atomic orbital electron populations 1.69870 1.06993 1.26522 1.60035 1.25433 0.96032 1.00940 1.03058 0.85494 0.78735 0.80299 0.77738 1.21258 1.22104 1.17757 1.19035 0.82599 0.93372 1.40528 0.92206 1.42898 1.02512 1.03788 1.90099 1.20366 0.89217 0.87188 0.95089 0.93351 1.23578 0.96749 1.00587 0.97022 1.21667 0.93557 1.02868 0.93865 1.22163 0.94483 0.98321 0.97454 0.89045 1.21633 0.97315 1.01377 0.80042 1.49860 1.06592 1.64315 1.14653 1.21055 0.88340 0.77285 0.83623 1.90697 1.83727 1.48063 1.24077 1.21638 0.85668 1.06885 0.89824 1.46644 1.44951 1.14990 1.24477 1.21766 0.79446 0.84384 0.82907 1.90763 1.54455 1.18170 1.76095 1.22591 1.02576 0.94556 0.98183 1.22599 1.04021 0.98738 0.92624 1.21813 0.78142 0.80173 0.88554 1.90772 1.61025 1.35521 1.52425 1.21361 0.80112 1.00791 0.96961 1.22329 0.97013 1.00524 0.94750 0.90739 0.93414 0.80412 0.91702 0.92966 0.90743 0.88629 0.88827 0.87068 0.84169 0.83694 0.84556 0.82445 0.84704 0.82486 0.92985 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.86 13.97 21.65 0.30 -63.56 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.95 46.85 27.73 68.60 1.90 48.75 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.25 -11.28 6.52 99.48 0.65 -10.64 16 7 C -0.22 -12.78 10.46 84.03 0.88 -11.90 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -34.81 4.93 -322.00 -1.59 -36.40 16 10 C 0.19 6.81 3.40 45.19 0.15 6.97 16 11 H 0.05 1.86 8.12 -2.38 -0.02 1.84 16 12 C -0.14 -4.13 6.73 32.80 0.22 -3.91 16 13 C -0.08 -1.57 6.72 31.13 0.21 -1.36 16 14 C -0.10 -2.02 2.77 -10.56 -0.03 -2.05 16 15 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 16 C 0.12 1.82 6.41 84.99 0.54 2.36 16 17 N -0.62 -15.34 3.43 -815.09 -2.79 -18.13 16 18 C 0.51 14.02 7.95 87.66 0.70 14.72 16 19 O -0.59 -21.56 16.76 -3.05 -0.05 -21.61 16 20 C 0.08 1.56 5.27 85.63 0.45 2.01 16 21 N -0.57 -10.52 2.04 -760.73 -1.55 -12.07 16 22 C 0.52 8.86 8.08 87.99 0.71 9.57 16 23 O -0.52 -12.66 17.47 -2.87 -0.05 -12.71 16 24 C -0.14 -0.72 7.03 30.46 0.21 -0.51 16 25 C -0.14 -0.78 7.03 30.46 0.21 -0.57 16 26 C 0.52 9.23 8.08 87.99 0.71 9.94 16 27 O -0.52 -13.53 17.48 -2.86 -0.05 -13.58 16 28 C 0.13 3.90 6.81 85.08 0.58 4.48 16 29 C -0.13 -3.63 2.42 -10.56 -0.03 -3.65 16 30 H 0.07 2.27 7.90 -2.38 -0.02 2.25 16 31 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 32 H 0.36 16.53 5.50 -92.71 -0.51 16.02 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.81 7.98 -2.39 -0.02 1.79 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.14 2.05 7.83 -2.39 -0.02 2.03 16 40 H 0.15 1.96 7.82 -2.39 -0.02 1.94 16 41 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.16 -0.17 8.14 -2.38 -0.02 -0.19 16 45 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -89.39 378.35 2.55 -86.84 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.43 Total: 19.70 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.00 Total: 22.77 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -5.63 Total: -130.16 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.15 Total: -47.90 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.90 Total: 48.75 kcal Total: -89.39 2.55 -86.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.712 kcal (2) G-P(sol) polarization free energy of solvation -89.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds