Wall clock time and date at job start Tue Mar 31 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47289 * 269.99772 * 3 2 1 5 5 H 1.48500 * 109.47351 * 30.00045 * 3 2 1 6 6 H 1.48498 * 109.47035 * 149.99542 * 3 2 1 7 7 C 1.38813 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99437 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99728 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.40770 * 32.54174 * 10 9 7 12 12 C 1.54829 * 110.56893 * 269.99048 * 10 9 7 13 13 C 1.54831 * 102.73305 * 203.00489 * 12 10 9 14 14 C 1.54139 * 104.35214 * 38.22891 * 13 12 10 15 15 H 1.09005 * 112.65460 * 99.31700 * 14 13 12 16 16 C 1.54467 * 108.80033 * 224.04525 * 14 13 12 17 17 N 1.48340 * 104.30806 * 138.53995 * 16 14 13 18 18 C 1.34776 * 128.19374 * 138.19464 * 17 16 14 19 19 O 1.21283 * 119.99720 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00346 * 0.02739 * 18 17 16 21 21 N 1.46495 * 109.47283 * 179.97438 * 20 18 17 22 22 C 1.33882 * 122.76209 * 269.70935 * 21 20 18 23 23 O 1.21221 * 125.39380 * 359.97438 * 22 21 20 24 24 C 1.51313 * 109.20375 * 179.84094 * 22 21 20 25 25 C 1.54231 * 103.55800 * 0.39256 * 24 22 21 26 26 C 1.33882 * 122.76195 * 89.99938 * 21 20 18 27 27 O 1.21223 * 125.39338 * 0.02632 * 26 21 20 28 28 C 1.48338 * 103.60778 * 318.23617 * 17 16 14 29 29 C 1.54156 * 110.45431 * 155.00074 * 10 9 7 30 30 H 1.09001 * 112.65336 * 19.52662 * 29 10 9 31 31 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00100 * 0.02562 * 9 7 2 33 33 H 1.09000 * 110.76298 * 321.31819 * 12 10 9 34 34 H 1.09007 * 110.75505 * 84.51033 * 12 10 9 35 35 H 1.09002 * 110.45736 * 279.51223 * 13 12 10 36 36 H 1.09007 * 110.45878 * 156.95025 * 13 12 10 37 37 H 1.09001 * 110.46179 * 257.24528 * 16 14 13 38 38 H 1.08991 * 110.46271 * 19.70423 * 16 14 13 39 39 H 1.09001 * 109.46922 * 300.00292 * 20 18 17 40 40 H 1.09004 * 109.47071 * 59.99838 * 20 18 17 41 41 H 1.08995 * 110.80037 * 241.77868 * 24 22 21 42 42 H 1.09009 * 110.54660 * 118.87778 * 24 22 21 43 43 H 1.09004 * 110.60302 * 241.25831 * 25 24 22 44 44 H 1.08997 * 110.74395 * 118.35789 * 25 24 22 45 45 H 1.09000 * 110.46595 * 160.47634 * 28 17 16 46 46 H 1.08999 * 110.46193 * 282.93059 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9945 -3.5555 0.5472 12 6 2.3289 -4.1273 -1.4517 13 6 2.5287 -5.6534 -1.2835 14 6 1.4961 -6.0583 -0.2131 15 1 0.5923 -6.4897 -0.6434 16 6 2.1712 -7.0174 0.7921 17 7 1.6706 -6.5729 2.1159 18 6 1.2676 -7.3336 3.1528 19 8 0.8819 -6.8089 4.1760 20 6 1.2961 -8.8362 3.0410 21 7 0.8139 -9.4282 4.2912 22 6 1.6282 -9.7360 5.3084 23 8 2.8288 -9.5692 5.3220 24 6 0.8118 -10.3221 6.4396 25 6 -0.6293 -10.3087 5.8901 26 6 -0.4765 -9.7111 4.5085 27 8 -1.3793 -9.5194 3.7225 28 6 1.7176 -5.0929 2.0277 29 6 1.1944 -4.7781 0.6089 30 1 0.1318 -4.5354 0.6114 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 1.4720 -3.9181 -2.0921 34 1 3.2294 -3.6583 -1.8483 35 1 3.5398 -5.8696 -0.9385 36 1 2.3269 -6.1698 -2.2221 37 1 1.8708 -8.0469 0.5971 38 1 3.2557 -6.9216 0.7408 39 1 0.6547 -9.1515 2.2180 40 1 2.3175 -9.1672 2.8529 41 1 0.8874 -9.7024 7.3330 42 1 1.1313 -11.3421 6.6535 43 1 -1.2705 -9.6822 6.5103 44 1 -1.0283 -11.3212 5.8283 45 1 1.0692 -4.6454 2.7810 46 1 2.7408 -4.7364 2.1465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026416044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:15 Heat of formation + Delta-G solvation = -74.719415 kcal Electronic energy + Delta-G solvation = -29264.629200 eV Core-core repulsion = 25154.935389 eV Total energy + Delta-G solvation = -4109.693811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27534 -40.23964 -38.88192 -38.45089 -36.13862 -35.21877 -33.84286 -33.36328 -31.01062 -30.06762 -28.46231 -27.83273 -26.56603 -25.04918 -23.79153 -22.85907 -22.75714 -20.71166 -20.01493 -19.20931 -18.97668 -17.92728 -17.53910 -17.06037 -16.85740 -16.73475 -15.88673 -15.56605 -15.29365 -14.91102 -14.53550 -14.37392 -14.31388 -14.24519 -14.09466 -13.65816 -13.24136 -13.18499 -13.07955 -12.91196 -12.39630 -12.35066 -11.83045 -11.80220 -11.67256 -11.21554 -11.05686 -10.97689 -10.79666 -10.70074 -10.61995 -10.40910 -10.39907 -10.28862 -10.21951 -9.96670 -9.71883 -9.63130 -8.89152 -8.76653 -6.96054 -5.77444 -3.06425 1.18947 1.93319 2.35976 2.45587 2.95387 3.43265 3.48615 3.50299 3.67016 3.80542 4.00797 4.19735 4.42925 4.52651 4.60278 4.63142 4.78562 4.79726 4.87687 4.97747 5.00406 5.16167 5.19157 5.23794 5.38391 5.40555 5.53607 5.58981 5.72207 5.79683 5.89381 5.92881 6.03077 6.13768 6.21556 6.27921 6.38458 6.40964 6.53159 6.63897 6.78269 6.95436 7.02018 7.36992 7.49079 7.69443 7.99086 8.40929 9.52109 10.09444 10.43359 11.45062 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002501 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.639540 B =11193.289908 C =11707.679918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.057 0.943 12 C -0.143 4.143 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.086 0.914 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.522 3.478 19 O -0.535 6.535 20 C 0.084 3.916 21 N -0.560 5.560 22 C 0.531 3.469 23 O -0.480 6.480 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.530 3.470 27 O -0.477 6.477 28 C 0.116 3.884 29 C -0.107 4.107 30 H 0.089 0.911 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -26.570 7.320 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.309 3.691 19 O -0.412 6.412 20 C -0.041 4.041 21 N -0.303 5.303 22 C 0.321 3.679 23 O -0.351 6.351 24 C -0.193 4.193 25 C -0.193 4.193 26 C 0.320 3.680 27 O -0.348 6.348 28 C -0.006 4.006 29 C -0.127 4.127 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.359 -25.991 7.582 27.177 hybrid contribution 0.161 1.080 -0.236 1.117 sum 2.520 -24.911 7.346 26.093 Atomic orbital electron populations 1.69660 1.05115 1.25701 1.57528 1.24748 0.95497 0.97716 1.02921 0.86207 0.78679 0.83927 0.77476 1.21744 1.21798 1.20762 1.19231 0.90966 0.84105 1.42843 0.91179 1.42445 1.05729 0.99708 1.88135 1.21128 0.93740 0.85189 0.92622 0.92474 1.23219 1.01548 0.92788 1.00780 1.22385 0.97638 0.97871 0.97489 1.22744 0.98756 0.95288 0.95368 0.89543 1.22835 0.98999 0.98644 0.81689 1.49174 1.63602 1.08595 1.14088 1.20185 0.77584 0.88605 0.82724 1.90730 1.47280 1.74243 1.28922 1.21530 1.03953 0.91661 0.86997 1.46345 1.10868 1.55896 1.17154 1.20840 0.87118 0.76083 0.83899 1.90787 1.13061 1.51054 1.80193 1.22447 0.93454 1.05018 0.98408 1.22453 0.98393 1.04947 0.93553 1.20853 0.81096 0.76250 0.89848 1.90800 1.42394 1.50454 1.51167 1.22666 1.01846 0.77897 0.98181 1.23092 1.01405 0.95170 0.93060 0.89245 0.93484 0.78162 0.91553 0.92143 0.91673 0.92141 0.90793 0.90161 0.85922 0.85953 0.85863 0.86046 0.85877 0.86007 0.89951 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.56 5.21 -51.91 -0.27 -17.83 16 10 C 0.18 3.44 3.05 -66.36 -0.20 3.24 16 11 H 0.06 1.09 7.13 -51.93 -0.37 0.72 16 12 C -0.14 -2.32 6.57 -24.80 -0.16 -2.49 16 13 C -0.12 -1.38 6.36 -25.17 -0.16 -1.54 16 14 C -0.10 -1.24 3.95 -88.15 -0.35 -1.59 16 15 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 16 C 0.10 1.04 6.46 -2.26 -0.01 1.03 16 17 N -0.62 -8.55 3.31 -168.90 -0.56 -9.11 16 18 C 0.52 7.72 7.99 -10.99 -0.09 7.63 16 19 O -0.54 -10.04 16.71 5.55 0.09 -9.95 16 20 C 0.08 0.88 5.02 -5.20 -0.03 0.86 16 21 N -0.56 -5.84 2.04 -116.63 -0.24 -6.08 16 22 C 0.53 5.20 8.08 -11.08 -0.09 5.11 16 23 O -0.48 -6.30 17.47 5.61 0.10 -6.21 16 24 C -0.15 -0.71 7.03 -26.94 -0.19 -0.90 16 25 C -0.15 -0.73 7.03 -26.94 -0.19 -0.92 16 26 C 0.53 5.30 8.08 -11.08 -0.09 5.21 16 27 O -0.48 -6.48 17.48 5.61 0.10 -6.38 16 28 C 0.12 1.84 6.58 -2.26 -0.01 1.83 16 29 C -0.11 -1.70 3.63 -88.14 -0.32 -2.02 16 30 H 0.09 1.58 7.83 -51.93 -0.41 1.18 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.08 7.63 -40.82 -0.31 9.77 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 35 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 38 H 0.08 0.75 7.20 -51.93 -0.37 0.37 16 39 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 40 H 0.12 1.05 7.82 -51.93 -0.41 0.64 16 41 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.12 0.23 8.14 -51.92 -0.42 -0.19 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 1.51 7.88 -51.93 -0.41 1.10 16 46 H 0.08 1.22 7.21 -51.93 -0.37 0.84 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -37.09 377.58 -8.26 -45.35 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.73 Total: 6.26 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -2.14 Total: 8.28 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.34 Total: -60.41 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.29 Total: -22.53 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.09 -8.26 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.365 kcal (2) G-P(sol) polarization free energy of solvation -37.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds