Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47289 * 269.99772 * 3 2 1 5 5 H 1.48500 * 109.47351 * 30.00045 * 3 2 1 6 6 H 1.48498 * 109.47035 * 149.99542 * 3 2 1 7 7 C 1.38813 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99437 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99728 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.40770 * 32.54174 * 10 9 7 12 12 C 1.54829 * 110.56893 * 269.99048 * 10 9 7 13 13 C 1.54831 * 102.73305 * 203.00489 * 12 10 9 14 14 C 1.54139 * 104.35214 * 38.22891 * 13 12 10 15 15 H 1.09005 * 112.65460 * 99.31700 * 14 13 12 16 16 C 1.54467 * 108.80033 * 224.04525 * 14 13 12 17 17 N 1.48340 * 104.30806 * 138.53995 * 16 14 13 18 18 C 1.34776 * 128.19374 * 138.19464 * 17 16 14 19 19 O 1.21283 * 119.99720 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00346 * 0.02739 * 18 17 16 21 21 N 1.46495 * 109.47283 * 179.97438 * 20 18 17 22 22 C 1.33882 * 122.76209 * 269.70935 * 21 20 18 23 23 O 1.21221 * 125.39380 * 359.97438 * 22 21 20 24 24 C 1.51313 * 109.20375 * 179.84094 * 22 21 20 25 25 C 1.54231 * 103.55800 * 0.39256 * 24 22 21 26 26 C 1.33882 * 122.76195 * 89.99938 * 21 20 18 27 27 O 1.21223 * 125.39338 * 0.02632 * 26 21 20 28 28 C 1.48338 * 103.60778 * 318.23617 * 17 16 14 29 29 C 1.54156 * 110.45431 * 155.00074 * 10 9 7 30 30 H 1.09001 * 112.65336 * 19.52662 * 29 10 9 31 31 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00100 * 0.02562 * 9 7 2 33 33 H 1.09000 * 110.76298 * 321.31819 * 12 10 9 34 34 H 1.09007 * 110.75505 * 84.51033 * 12 10 9 35 35 H 1.09002 * 110.45736 * 279.51223 * 13 12 10 36 36 H 1.09007 * 110.45878 * 156.95025 * 13 12 10 37 37 H 1.09001 * 110.46179 * 257.24528 * 16 14 13 38 38 H 1.08991 * 110.46271 * 19.70423 * 16 14 13 39 39 H 1.09001 * 109.46922 * 300.00292 * 20 18 17 40 40 H 1.09004 * 109.47071 * 59.99838 * 20 18 17 41 41 H 1.08995 * 110.80037 * 241.77868 * 24 22 21 42 42 H 1.09009 * 110.54660 * 118.87778 * 24 22 21 43 43 H 1.09004 * 110.60302 * 241.25831 * 25 24 22 44 44 H 1.08997 * 110.74395 * 118.35789 * 25 24 22 45 45 H 1.09000 * 110.46595 * 160.47634 * 28 17 16 46 46 H 1.08999 * 110.46193 * 282.93059 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9945 -3.5555 0.5472 12 6 2.3289 -4.1273 -1.4517 13 6 2.5287 -5.6534 -1.2835 14 6 1.4961 -6.0583 -0.2131 15 1 0.5923 -6.4897 -0.6434 16 6 2.1712 -7.0174 0.7921 17 7 1.6706 -6.5729 2.1159 18 6 1.2676 -7.3336 3.1528 19 8 0.8819 -6.8089 4.1760 20 6 1.2961 -8.8362 3.0410 21 7 0.8139 -9.4282 4.2912 22 6 1.6282 -9.7360 5.3084 23 8 2.8288 -9.5692 5.3220 24 6 0.8118 -10.3221 6.4396 25 6 -0.6293 -10.3087 5.8901 26 6 -0.4765 -9.7111 4.5085 27 8 -1.3793 -9.5194 3.7225 28 6 1.7176 -5.0929 2.0277 29 6 1.1944 -4.7781 0.6089 30 1 0.1318 -4.5354 0.6114 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 1.4720 -3.9181 -2.0921 34 1 3.2294 -3.6583 -1.8483 35 1 3.5398 -5.8696 -0.9385 36 1 2.3269 -6.1698 -2.2221 37 1 1.8708 -8.0469 0.5971 38 1 3.2557 -6.9216 0.7408 39 1 0.6547 -9.1515 2.2180 40 1 2.3175 -9.1672 2.8529 41 1 0.8874 -9.7024 7.3330 42 1 1.1313 -11.3421 6.6535 43 1 -1.2705 -9.6822 6.5103 44 1 -1.0283 -11.3212 5.8283 45 1 1.0692 -4.6454 2.7810 46 1 2.7408 -4.7364 2.1465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026416044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = -101.586752 kcal Electronic energy + Delta-G solvation = -29265.794255 eV Core-core repulsion = 25154.935389 eV Total energy + Delta-G solvation = -4110.858866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.00919 -41.40028 -39.70212 -39.68051 -36.96907 -36.71559 -35.06089 -34.44424 -32.73689 -31.26857 -29.85988 -28.76566 -27.14058 -26.65082 -24.92713 -24.58141 -23.36673 -21.78598 -21.12858 -20.41900 -20.03300 -19.13842 -18.79075 -18.29592 -17.70829 -17.57729 -17.16824 -16.66561 -16.54171 -15.98831 -15.72894 -15.67022 -15.31660 -15.15373 -14.95661 -14.86795 -14.60620 -14.42116 -14.06849 -13.72404 -13.56074 -13.36055 -13.30290 -13.01535 -12.92460 -12.62436 -12.37811 -12.13469 -12.12074 -12.09261 -11.79491 -11.70695 -11.64604 -11.55613 -11.45517 -11.41628 -11.15649 -10.93270 -10.70165 -9.93377 -8.98872 -7.95426 -5.23394 0.47017 1.16711 1.33571 1.45079 1.46761 1.54884 1.66112 1.96901 2.54901 3.18259 3.19887 3.23999 3.38191 3.44648 3.61646 3.68000 3.72610 3.93072 4.01304 4.04918 4.17282 4.18540 4.20343 4.31899 4.42801 4.46549 4.56226 4.63195 4.66620 4.74966 4.77933 4.88300 4.89190 4.91044 4.99787 5.05985 5.11433 5.26362 5.40048 5.46541 5.50917 5.61989 5.70860 6.25219 6.27063 6.37738 6.65278 6.86237 7.32339 8.10001 8.31352 9.28380 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002501 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.639540 B =11193.289908 C =11707.679918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.175 3.825 11 H 0.054 0.946 12 C -0.138 4.138 13 C -0.099 4.099 14 C -0.093 4.093 15 H 0.098 0.902 16 C 0.102 3.898 17 N -0.619 5.619 18 C 0.512 3.488 19 O -0.587 6.587 20 C 0.086 3.914 21 N -0.569 5.569 22 C 0.522 3.478 23 O -0.521 6.521 24 C -0.140 4.140 25 C -0.141 4.141 26 C 0.521 3.479 27 O -0.523 6.523 28 C 0.119 3.881 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.249 0.751 32 H 0.370 0.630 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.158 0.842 45 H 0.044 0.956 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -29.991 7.341 31.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.066 3.934 11 H 0.072 0.928 12 C -0.179 4.179 13 C -0.137 4.137 14 C -0.113 4.113 15 H 0.117 0.883 16 C -0.019 4.019 17 N -0.352 5.352 18 C 0.301 3.699 19 O -0.468 6.468 20 C -0.039 4.039 21 N -0.311 5.311 22 C 0.315 3.685 23 O -0.395 6.395 24 C -0.179 4.179 25 C -0.179 4.179 26 C 0.313 3.687 27 O -0.397 6.397 28 C -0.004 4.004 29 C -0.124 4.124 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.176 0.824 45 H 0.063 0.937 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.949 -29.484 7.582 30.698 hybrid contribution -0.296 2.124 -0.235 2.157 sum 3.654 -27.360 7.347 28.564 Atomic orbital electron populations 1.69826 1.06678 1.25903 1.59929 1.25558 0.96329 1.01124 1.04137 0.85172 0.77693 0.79691 0.77438 1.21288 1.22579 1.19420 1.19633 0.91415 0.85238 1.40410 0.90502 1.42672 1.05279 1.01141 1.88396 1.21416 0.93445 0.83818 0.94680 0.92784 1.23042 1.00467 0.96473 0.97896 1.22333 0.98705 0.93999 0.98667 1.22744 0.99741 0.93393 0.95385 0.88346 1.23109 0.99944 1.00124 0.78714 1.49248 1.63178 1.07376 1.15424 1.21073 0.76402 0.90452 0.82002 1.90694 1.49554 1.75537 1.30997 1.21625 1.05838 0.88197 0.88281 1.46650 1.11516 1.55521 1.17387 1.21782 0.86890 0.75162 0.84707 1.90761 1.14876 1.52913 1.80966 1.22592 0.91995 1.06828 0.96466 1.22600 0.98843 1.06625 0.89873 1.21824 0.80248 0.75307 0.91336 1.90773 1.43417 1.52497 1.52983 1.22437 1.00940 0.79929 0.97114 1.22900 0.99230 0.96447 0.93789 0.91907 0.94186 0.79840 0.93498 0.92542 0.89358 0.89439 0.86768 0.88086 0.84011 0.83675 0.84584 0.82378 0.84717 0.82405 0.93689 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.12 9.96 84.03 0.84 -12.29 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.34 5.21 -318.14 -1.66 -39.00 16 10 C 0.18 6.65 3.05 46.01 0.14 6.79 16 11 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 12 C -0.14 -4.38 6.57 31.84 0.21 -4.17 16 13 C -0.10 -2.01 6.36 31.61 0.20 -1.81 16 14 C -0.09 -2.03 3.95 -9.19 -0.04 -2.07 16 15 H 0.10 1.98 8.14 -2.38 -0.02 1.97 16 16 C 0.10 1.76 6.46 86.52 0.56 2.32 16 17 N -0.62 -16.63 3.31 -806.67 -2.67 -19.31 16 18 C 0.51 15.08 7.99 87.66 0.70 15.78 16 19 O -0.59 -22.94 16.71 -3.04 -0.05 -22.99 16 20 C 0.09 1.67 5.02 85.63 0.43 2.10 16 21 N -0.57 -11.12 2.04 -760.73 -1.55 -12.67 16 22 C 0.52 9.37 8.08 87.99 0.71 10.08 16 23 O -0.52 -13.21 17.47 -2.85 -0.05 -13.26 16 24 C -0.14 -0.83 7.03 30.46 0.21 -0.62 16 25 C -0.14 -0.88 7.03 30.46 0.21 -0.67 16 26 C 0.52 9.69 8.08 87.99 0.71 10.40 16 27 O -0.52 -13.97 17.48 -2.85 -0.05 -14.02 16 28 C 0.12 3.92 6.58 86.52 0.57 4.49 16 29 C -0.10 -3.35 3.63 -9.19 -0.03 -3.39 16 30 H 0.06 2.37 7.83 -2.39 -0.02 2.36 16 31 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.37 20.56 7.63 -92.71 -0.71 19.86 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.09 1.45 7.18 -2.39 -0.02 1.44 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.11 1.14 7.32 -2.39 -0.02 1.12 16 38 H 0.10 1.41 7.20 -2.39 -0.02 1.39 16 39 H 0.14 2.19 7.67 -2.39 -0.02 2.17 16 40 H 0.15 2.13 7.82 -2.38 -0.02 2.11 16 41 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.16 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.04 1.79 7.88 -2.39 -0.02 1.77 16 46 H 0.08 2.56 7.21 -2.39 -0.02 2.54 16 Total: -1.00 -88.01 377.58 2.48 -85.53 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.30 Total: 24.62 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 5.89 Total: 22.77 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -5.60 Total: -131.70 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.15 Total: -50.28 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -88.01 2.48 -85.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.054 kcal (2) G-P(sol) polarization free energy of solvation -88.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds