Wall clock time and date at job start Tue Mar 31 2020 18:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48496 * 109.47432 * 270.00180 * 3 2 1 5 5 H 1.48505 * 109.46868 * 30.00509 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99993 * 3 2 1 7 7 C 1.38804 * 120.00586 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00208 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99997 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.44602 * 36.10550 * 10 9 7 12 12 C 1.55949 * 110.49583 * 273.54411 * 10 9 7 13 13 C 1.56403 * 105.79037 * 248.73845 * 12 10 9 14 14 C 1.50992 * 101.59327 * 25.01919 * 13 12 10 15 15 H 1.09002 * 110.05631 * 68.76942 * 14 13 12 16 16 C 1.50349 * 125.56620 * 203.98162 * 14 13 12 17 17 N 1.49216 * 104.86417 * 143.74256 * 16 14 13 18 18 C 1.34777 * 126.06046 * 172.92793 * 17 16 14 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99928 * 0.30491 * 18 17 16 21 21 N 1.46491 * 109.46957 * 179.72354 * 20 18 17 22 22 C 1.33888 * 122.76328 * 269.70747 * 21 20 18 23 23 O 1.21224 * 125.39088 * 359.97438 * 22 21 20 24 24 C 1.51313 * 109.20702 * 179.84364 * 22 21 20 25 25 C 1.54234 * 103.55748 * 0.38581 * 24 22 21 26 26 C 1.33875 * 122.76687 * 89.99726 * 21 20 18 27 27 O 1.21231 * 125.39728 * 359.97438 * 26 21 20 28 28 C 1.49700 * 107.87982 * 353.19336 * 17 16 14 29 29 C 1.50343 * 111.20835 * 158.82476 * 10 9 7 30 30 H 1.09002 * 110.55661 * 198.69784 * 29 10 9 31 31 H 0.96998 * 120.00423 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.09001 * 110.18506 * 129.65713 * 12 10 9 34 34 H 1.09000 * 110.18401 * 7.82203 * 12 10 9 35 35 H 1.08993 * 111.00020 * 266.93754 * 13 12 10 36 36 H 1.08997 * 110.99741 * 143.09324 * 13 12 10 37 37 H 1.09004 * 110.36300 * 24.89446 * 16 14 13 38 38 H 1.09005 * 110.44937 * 262.63394 * 16 14 13 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 1.08996 * 110.79584 * 241.77478 * 24 22 21 42 42 H 1.09001 * 110.54482 * 118.87686 * 24 22 21 43 43 H 1.08998 * 110.60543 * 241.26221 * 25 24 22 44 44 H 1.08996 * 110.60379 * 118.29283 * 25 24 22 45 45 H 1.08999 * 110.84376 * 92.79905 * 28 17 16 46 46 H 1.09003 * 110.84137 * 216.40649 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 -0.0011 10 6 4.1122 -2.4706 -0.0011 11 1 3.5879 -3.2130 -0.6025 12 6 4.3077 -2.9883 1.4569 13 6 5.8391 -2.8664 1.7502 14 6 6.2450 -1.7709 0.7936 15 1 5.8146 -0.8205 1.1093 16 6 7.6294 -1.5543 0.2488 17 7 7.4206 -1.0913 -1.1543 18 6 8.3766 -0.6458 -1.9933 19 8 8.0823 -0.2947 -3.1163 20 6 9.8122 -0.5899 -1.5382 21 7 10.6500 -0.0804 -2.6266 22 6 11.2273 -0.8803 -3.5319 23 8 11.1325 -2.0884 -3.5632 24 6 12.0140 -0.0370 -4.5114 25 6 11.7971 1.4033 -4.0042 26 6 10.9060 1.2228 -2.7947 27 8 10.4895 2.1169 -2.0898 28 6 5.9600 -1.2033 -1.4626 29 6 5.5158 -2.2881 -0.5079 30 1 5.9390 -3.2444 -0.8155 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3619 -0.0014 33 1 3.9920 -4.0289 1.5321 34 1 3.7408 -2.3714 2.1542 35 1 6.3563 -3.7977 1.5198 36 1 6.0164 -2.5681 2.7835 37 1 8.1920 -2.4878 0.2604 38 1 8.1508 -0.7909 0.8264 39 1 9.8945 0.0719 -0.6760 40 1 10.1448 -1.5903 -1.2615 41 1 11.6220 -0.1509 -5.5221 42 1 13.0714 -0.2999 -4.4794 43 1 11.2972 2.0059 -4.7626 44 1 12.7462 1.8559 -3.7173 45 1 5.4464 -0.2649 -1.2535 46 1 5.8044 -1.5098 -2.4970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026416045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:18 Heat of formation + Delta-G solvation = -54.953171 kcal Electronic energy + Delta-G solvation = -29669.414342 eV Core-core repulsion = 25560.577660 eV Total energy + Delta-G solvation = -4108.836682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29495 -40.63958 -38.89753 -38.71400 -36.15977 -35.42750 -33.86148 -33.42471 -31.17421 -30.24392 -28.93632 -27.80400 -26.58176 -25.71692 -23.40735 -22.82160 -22.77220 -20.52500 -20.15745 -19.27613 -19.03560 -18.04872 -17.70722 -17.55273 -16.86352 -16.56890 -16.16397 -15.52089 -15.07596 -14.84087 -14.62208 -14.55230 -14.40328 -14.26989 -14.03186 -14.01139 -13.75248 -13.19710 -12.95822 -12.73820 -12.65288 -12.41453 -12.05288 -11.92472 -11.82065 -11.45633 -11.18426 -11.05928 -10.94758 -10.78310 -10.69408 -10.50681 -10.41622 -10.37926 -10.15349 -9.86714 -9.65773 -9.58973 -8.96721 -8.76135 -7.31178 -5.80009 -3.16134 1.17202 1.90889 2.34144 2.43558 2.84430 3.34754 3.38602 3.44718 3.65238 3.78715 3.95371 3.99092 4.28425 4.42521 4.56183 4.60224 4.77477 4.78023 4.93064 4.98668 5.00922 5.10464 5.14498 5.17559 5.24820 5.36016 5.42106 5.49059 5.52022 5.62391 5.75669 5.83480 5.94644 6.06909 6.08496 6.20057 6.26823 6.36073 6.39391 6.46292 6.67373 6.92073 6.93752 7.31115 7.40424 7.94847 7.96329 8.39196 9.16697 9.89321 10.08038 11.38252 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003079 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.267563 B = 9092.571158 C =10062.461034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.200 3.800 11 H 0.064 0.936 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.130 4.130 15 H 0.087 0.913 16 C 0.116 3.884 17 N -0.621 5.621 18 C 0.518 3.482 19 O -0.535 6.535 20 C 0.084 3.916 21 N -0.560 5.560 22 C 0.531 3.469 23 O -0.480 6.480 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.530 3.470 27 O -0.478 6.478 28 C 0.130 3.870 29 C -0.123 4.123 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.360 0.640 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.360 -2.552 -3.045 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.185 4.185 13 C -0.133 4.133 14 C -0.149 4.149 15 H 0.105 0.895 16 C -0.005 4.005 17 N -0.357 5.357 18 C 0.304 3.696 19 O -0.412 6.412 20 C -0.041 4.041 21 N -0.303 5.303 22 C 0.321 3.679 23 O -0.351 6.351 24 C -0.193 4.193 25 C -0.193 4.193 26 C 0.319 3.681 27 O -0.349 6.349 28 C 0.009 3.991 29 C -0.143 4.143 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.720 -2.555 -3.347 28.038 hybrid contribution 0.391 1.268 0.211 1.344 sum 28.111 -1.286 -3.136 28.314 Atomic orbital electron populations 1.69686 1.05071 1.25848 1.57364 1.24644 0.95172 0.97060 1.01950 0.86656 0.79157 0.85325 0.77967 1.20945 1.21622 1.20514 1.19057 0.80444 0.94721 1.43137 0.89018 1.42780 1.04010 1.01737 1.90013 1.20081 0.88242 0.89622 0.93141 0.91824 1.23818 0.93654 1.00986 1.00060 1.21726 0.97325 0.96458 0.97814 1.22252 0.94065 1.01189 0.97420 0.89465 1.21380 0.98041 0.99650 0.81472 1.49830 1.08270 1.63862 1.13733 1.20246 0.86689 0.77573 0.85085 1.90728 1.82510 1.48418 1.19505 1.21543 0.88576 1.03695 0.90318 1.46343 1.45043 1.10164 1.28704 1.20841 0.78324 0.87472 0.81292 1.90787 1.59797 1.12610 1.71896 1.22450 1.03066 0.93171 1.00648 1.22456 1.01831 0.98356 0.96686 1.20860 0.79943 0.81153 0.86118 1.90804 1.51549 1.43738 1.48772 1.21559 0.78129 0.99438 0.99983 1.22611 0.98744 0.98280 0.94659 0.89784 0.93005 0.80636 0.92322 0.90345 0.91744 0.91862 0.90851 0.90883 0.85942 0.85895 0.85868 0.86032 0.85879 0.86004 0.90542 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 2 C 0.01 0.22 5.50 -17.44 -0.10 0.13 16 3 Si 0.88 22.22 27.73 -169.99 -4.71 17.50 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -6.66 10.46 -15.06 -0.16 -6.82 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.74 -16.69 4.65 -53.19 -0.25 -16.93 16 10 C 0.20 3.55 3.42 -67.68 -0.23 3.32 16 11 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 12 C -0.14 -2.22 6.73 -23.33 -0.16 -2.38 16 13 C -0.10 -1.13 6.70 -25.91 -0.17 -1.30 16 14 C -0.13 -1.67 2.75 -90.27 -0.25 -1.92 16 15 H 0.09 1.32 7.68 -51.93 -0.40 0.92 16 16 C 0.12 1.24 6.41 -3.86 -0.02 1.22 16 17 N -0.62 -8.72 3.42 -171.40 -0.59 -9.31 16 18 C 0.52 7.70 7.95 -10.98 -0.09 7.61 16 19 O -0.53 -10.01 16.76 5.55 0.09 -9.92 16 20 C 0.08 0.89 5.27 -5.20 -0.03 0.87 16 21 N -0.56 -5.88 2.04 -116.63 -0.24 -6.11 16 22 C 0.53 5.19 8.08 -11.08 -0.09 5.10 16 23 O -0.48 -6.27 17.47 5.61 0.10 -6.18 16 24 C -0.15 -0.71 7.03 -26.94 -0.19 -0.90 16 25 C -0.15 -0.74 7.03 -26.93 -0.19 -0.93 16 26 C 0.53 5.36 8.07 -11.08 -0.09 5.27 16 27 O -0.48 -6.58 17.48 5.60 0.10 -6.48 16 28 C 0.13 2.10 6.53 -3.18 -0.02 2.08 16 29 C -0.12 -1.81 2.62 -90.18 -0.24 -2.05 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.11 4.02 -40.82 -0.16 7.95 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.12 1.11 7.83 -51.93 -0.41 0.70 16 40 H 0.12 1.06 7.82 -51.93 -0.41 0.66 16 41 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 1.40 6.89 -51.93 -0.36 1.04 16 46 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -37.53 375.02 -7.90 -45.43 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.81 Total: 5.34 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.02 Total: 9.30 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.30 Total: -60.66 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.29 Total: -22.58 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.53 -7.90 -45.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.524 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds