Wall clock time and date at job start Tue Mar 31 2020 18:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48496 * 109.47432 * 270.00180 * 3 2 1 5 5 H 1.48505 * 109.46868 * 30.00509 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99993 * 3 2 1 7 7 C 1.38804 * 120.00586 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00208 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99997 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.44602 * 36.10550 * 10 9 7 12 12 C 1.55949 * 110.49583 * 273.54411 * 10 9 7 13 13 C 1.56403 * 105.79037 * 248.73845 * 12 10 9 14 14 C 1.50992 * 101.59327 * 25.01919 * 13 12 10 15 15 H 1.09002 * 110.05631 * 68.76942 * 14 13 12 16 16 C 1.50349 * 125.56620 * 203.98162 * 14 13 12 17 17 N 1.49216 * 104.86417 * 143.74256 * 16 14 13 18 18 C 1.34777 * 126.06046 * 172.92793 * 17 16 14 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99928 * 0.30491 * 18 17 16 21 21 N 1.46491 * 109.46957 * 179.72354 * 20 18 17 22 22 C 1.33888 * 122.76328 * 269.70747 * 21 20 18 23 23 O 1.21224 * 125.39088 * 359.97438 * 22 21 20 24 24 C 1.51313 * 109.20702 * 179.84364 * 22 21 20 25 25 C 1.54234 * 103.55748 * 0.38581 * 24 22 21 26 26 C 1.33875 * 122.76687 * 89.99726 * 21 20 18 27 27 O 1.21231 * 125.39728 * 359.97438 * 26 21 20 28 28 C 1.49700 * 107.87982 * 353.19336 * 17 16 14 29 29 C 1.50343 * 111.20835 * 158.82476 * 10 9 7 30 30 H 1.09002 * 110.55661 * 198.69784 * 29 10 9 31 31 H 0.96998 * 120.00423 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.09001 * 110.18506 * 129.65713 * 12 10 9 34 34 H 1.09000 * 110.18401 * 7.82203 * 12 10 9 35 35 H 1.08993 * 111.00020 * 266.93754 * 13 12 10 36 36 H 1.08997 * 110.99741 * 143.09324 * 13 12 10 37 37 H 1.09004 * 110.36300 * 24.89446 * 16 14 13 38 38 H 1.09005 * 110.44937 * 262.63394 * 16 14 13 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 1.08996 * 110.79584 * 241.77478 * 24 22 21 42 42 H 1.09001 * 110.54482 * 118.87686 * 24 22 21 43 43 H 1.08998 * 110.60543 * 241.26221 * 25 24 22 44 44 H 1.08996 * 110.60379 * 118.29283 * 25 24 22 45 45 H 1.08999 * 110.84376 * 92.79905 * 28 17 16 46 46 H 1.09003 * 110.84137 * 216.40649 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 -0.0011 10 6 4.1122 -2.4706 -0.0011 11 1 3.5879 -3.2130 -0.6025 12 6 4.3077 -2.9883 1.4569 13 6 5.8391 -2.8664 1.7502 14 6 6.2450 -1.7709 0.7936 15 1 5.8146 -0.8205 1.1093 16 6 7.6294 -1.5543 0.2488 17 7 7.4206 -1.0913 -1.1543 18 6 8.3766 -0.6458 -1.9933 19 8 8.0823 -0.2947 -3.1163 20 6 9.8122 -0.5899 -1.5382 21 7 10.6500 -0.0804 -2.6266 22 6 11.2273 -0.8803 -3.5319 23 8 11.1325 -2.0884 -3.5632 24 6 12.0140 -0.0370 -4.5114 25 6 11.7971 1.4033 -4.0042 26 6 10.9060 1.2228 -2.7947 27 8 10.4895 2.1169 -2.0898 28 6 5.9600 -1.2033 -1.4626 29 6 5.5158 -2.2881 -0.5079 30 1 5.9390 -3.2444 -0.8155 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3619 -0.0014 33 1 3.9920 -4.0289 1.5321 34 1 3.7408 -2.3714 2.1542 35 1 6.3563 -3.7977 1.5198 36 1 6.0164 -2.5681 2.7835 37 1 8.1920 -2.4878 0.2604 38 1 8.1508 -0.7909 0.8264 39 1 9.8945 0.0719 -0.6760 40 1 10.1448 -1.5903 -1.2615 41 1 11.6220 -0.1509 -5.5221 42 1 13.0714 -0.2999 -4.4794 43 1 11.2972 2.0059 -4.7626 44 1 12.7462 1.8559 -3.7173 45 1 5.4464 -0.2649 -1.2535 46 1 5.8044 -1.5098 -2.4970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026416045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:17 Heat of formation + Delta-G solvation = -82.387308 kcal Electronic energy + Delta-G solvation = -29670.603976 eV Core-core repulsion = 25560.577660 eV Total energy + Delta-G solvation = -4110.026316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02520 -41.79328 -39.90597 -39.71077 -37.00198 -36.83470 -35.15783 -34.46383 -33.05262 -31.37276 -30.26831 -28.70199 -27.14962 -27.08049 -24.89648 -24.39939 -23.37578 -21.40831 -21.21586 -20.60055 -20.12156 -19.84273 -18.66881 -18.45428 -17.63287 -17.48496 -17.31337 -16.80421 -16.37929 -16.00062 -15.85320 -15.55634 -15.53353 -15.32649 -15.08860 -14.94948 -14.67501 -14.49014 -14.13280 -13.86225 -13.64413 -13.56550 -13.44617 -13.27975 -13.03241 -12.75251 -12.41361 -12.27457 -12.13282 -11.99340 -11.97758 -11.81125 -11.70669 -11.61207 -11.47250 -11.16617 -11.08486 -10.96592 -10.73555 -9.91034 -9.32376 -8.06033 -5.37470 0.45947 1.13488 1.28833 1.32506 1.33110 1.37896 1.64404 1.88093 2.41723 2.86064 3.17167 3.22682 3.26146 3.31283 3.53784 3.60585 3.75001 3.83628 3.93058 4.01418 4.09121 4.16765 4.19255 4.22622 4.36033 4.39341 4.51293 4.58480 4.65287 4.73928 4.76790 4.83980 4.88248 4.89548 4.92579 4.94528 5.11093 5.19280 5.31630 5.40088 5.59952 5.69946 5.78289 6.19550 6.24219 6.25989 6.63955 6.83586 7.04934 7.82346 7.98926 9.15902 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003079 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.267563 B = 9092.571158 C =10062.461034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.059 4.059 3 Si 0.941 3.059 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.220 4.220 8 H 0.063 0.937 9 N -0.746 5.746 10 C 0.186 3.814 11 H 0.049 0.951 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.116 4.116 15 H 0.061 0.939 16 C 0.118 3.882 17 N -0.620 5.620 18 C 0.508 3.492 19 O -0.585 6.585 20 C 0.085 3.915 21 N -0.568 5.568 22 C 0.523 3.477 23 O -0.520 6.520 24 C -0.140 4.140 25 C -0.140 4.140 26 C 0.520 3.480 27 O -0.524 6.524 28 C 0.128 3.872 29 C -0.121 4.121 30 H 0.108 0.892 31 H 0.257 0.743 32 H 0.361 0.639 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.135 0.865 44 H 0.158 0.842 45 H 0.049 0.951 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.065 -2.960 -2.533 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.251 4.251 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.351 4.351 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.077 3.923 11 H 0.067 0.933 12 C -0.181 4.181 13 C -0.116 4.116 14 C -0.135 4.135 15 H 0.079 0.921 16 C -0.002 4.002 17 N -0.355 5.355 18 C 0.297 3.703 19 O -0.465 6.465 20 C -0.040 4.040 21 N -0.310 5.310 22 C 0.315 3.685 23 O -0.394 6.394 24 C -0.179 4.179 25 C -0.179 4.179 26 C 0.313 3.687 27 O -0.398 6.398 28 C 0.006 3.994 29 C -0.141 4.141 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.195 0.805 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.175 0.825 45 H 0.067 0.933 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 32.507 -3.008 -2.804 32.766 hybrid contribution -1.125 1.271 0.015 1.697 sum 31.383 -1.737 -2.790 31.554 Atomic orbital electron populations 1.69845 1.06847 1.26414 1.60236 1.25334 0.95915 1.00519 1.03333 0.85632 0.78746 0.81034 0.77667 1.21483 1.21932 1.18137 1.19046 0.82564 0.93387 1.40079 0.91885 1.42786 1.02376 1.03737 1.90053 1.20379 0.89428 0.87291 0.95152 0.93263 1.23641 0.96701 1.00914 0.96817 1.21664 0.94009 0.97465 0.98504 1.22225 0.94927 1.00249 0.96140 0.92053 1.21633 0.97096 1.02193 0.79308 1.49902 1.06950 1.63454 1.15174 1.21087 0.88329 0.76442 0.84489 1.90692 1.83541 1.50583 1.21711 1.21631 0.85758 1.05537 0.91034 1.46646 1.44720 1.10790 1.28892 1.21772 0.77927 0.87310 0.81490 1.90761 1.61377 1.14395 1.72876 1.22595 1.04288 0.91524 0.99478 1.22602 1.02212 0.98893 0.94221 1.21835 0.79698 0.80352 0.86856 1.90775 1.53574 1.44768 1.50709 1.21346 0.80087 0.98610 0.99386 1.22446 0.96929 0.98981 0.95744 0.87367 0.93416 0.80534 0.90942 0.93223 0.88541 0.90076 0.87260 0.88310 0.84254 0.83584 0.84542 0.82397 0.84704 0.82465 0.93265 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.94 47.27 27.73 68.60 1.90 49.17 16 4 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 5 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 6 H -0.26 -11.74 6.52 99.48 0.65 -11.10 16 7 C -0.22 -12.43 10.46 84.03 0.88 -11.55 16 8 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 9 N -0.75 -34.19 4.65 -322.18 -1.50 -35.69 16 10 C 0.19 6.60 3.42 45.15 0.15 6.76 16 11 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 12 C -0.14 -4.11 6.73 32.80 0.22 -3.89 16 13 C -0.08 -1.55 6.70 31.13 0.21 -1.34 16 14 C -0.12 -2.64 2.75 -10.57 -0.03 -2.67 16 15 H 0.06 1.74 7.68 -2.39 -0.02 1.72 16 16 C 0.12 2.07 6.41 85.00 0.54 2.61 16 17 N -0.62 -16.52 3.42 -814.57 -2.79 -19.31 16 18 C 0.51 14.71 7.95 87.66 0.70 15.40 16 19 O -0.58 -22.27 16.76 -3.04 -0.05 -22.32 16 20 C 0.09 1.66 5.27 85.64 0.45 2.11 16 21 N -0.57 -10.95 2.04 -760.73 -1.55 -12.51 16 22 C 0.52 9.15 8.08 87.99 0.71 9.86 16 23 O -0.52 -12.88 17.47 -2.86 -0.05 -12.93 16 24 C -0.14 -0.78 7.03 30.46 0.21 -0.57 16 25 C -0.14 -0.86 7.03 30.46 0.21 -0.64 16 26 C 0.52 9.62 8.07 87.99 0.71 10.33 16 27 O -0.52 -14.04 17.48 -2.88 -0.05 -14.09 16 28 C 0.13 4.17 6.53 85.16 0.56 4.73 16 29 C -0.12 -3.42 2.62 -10.51 -0.03 -3.45 16 30 H 0.11 2.59 8.14 -2.39 -0.02 2.58 16 31 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.36 16.42 4.02 -92.71 -0.37 16.05 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.14 2.19 7.83 -2.38 -0.02 2.17 16 40 H 0.15 2.10 7.82 -2.39 -0.02 2.08 16 41 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.05 1.86 6.89 -2.39 -0.02 1.84 16 46 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -89.11 375.02 2.75 -86.35 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.57 Total: 20.17 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 5.97 Total: 24.59 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -5.54 Total: -130.94 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.15 Total: -49.34 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Total: -89.11 2.75 -86.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026416045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -89.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds