Wall clock time and date at job start Tue Mar 31 2020 18:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00606 * 2 1 4 4 H 1.48496 * 109.47661 * 240.00071 * 3 2 1 5 5 H 1.48502 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47381 * 119.99675 * 3 2 1 7 7 C 1.38813 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49355 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11662 * 155.35235 * 10 9 7 12 12 C 1.53005 * 113.74081 * 137.95144 * 11 10 9 13 13 N 1.46494 * 109.47289 * 176.92710 * 12 11 10 14 14 C 1.34782 * 120.00158 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99764 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.59979 * 303.01211 * 16 14 13 18 18 C 1.55102 * 110.82491 * 66.03648 * 16 14 13 19 19 C 1.54599 * 102.84362 * 155.84695 * 18 16 14 20 20 C 1.54001 * 105.22468 * 338.14759 * 19 18 16 21 21 N 1.47896 * 107.05937 * 358.72932 * 20 19 18 22 22 C 1.46901 * 111.00226 * 145.84204 * 21 20 19 23 23 C 1.52999 * 109.46822 * 65.15252 * 22 21 20 24 24 F 1.39901 * 109.47357 * 54.12318 * 23 22 21 25 25 F 1.39901 * 109.46851 * 174.12028 * 23 22 21 26 26 F 1.39895 * 109.47058 * 294.12058 * 23 22 21 27 27 C 1.47818 * 134.45333 * 359.86211 * 9 7 2 28 28 H 0.96998 * 119.99426 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.77398 * 41.05829 * 10 9 7 30 30 H 1.09001 * 113.87032 * 269.66775 * 10 9 7 31 31 H 1.08998 * 113.74806 * 269.15153 * 11 10 9 32 32 H 1.09000 * 109.46901 * 56.92449 * 12 11 10 33 33 H 1.09010 * 109.46787 * 296.92676 * 12 11 10 34 34 H 0.97003 * 120.00026 * 0.02562 * 13 12 11 35 35 H 1.08996 * 110.71116 * 37.53998 * 18 16 14 36 36 H 1.08997 * 110.80890 * 274.19526 * 18 16 14 37 37 H 1.09005 * 110.31117 * 219.18913 * 19 18 16 38 38 H 1.08999 * 110.31468 * 97.11480 * 19 18 16 39 39 H 1.08999 * 109.91458 * 118.08089 * 20 19 18 40 40 H 1.08997 * 109.91602 * 239.17321 * 20 19 18 41 41 H 1.09003 * 109.47009 * 185.15461 * 22 21 20 42 42 H 1.08994 * 109.47116 * 305.14941 * 22 21 20 43 43 H 1.09000 * 113.76523 * 90.38820 * 27 9 7 44 44 H 1.08993 * 113.83477 * 318.92018 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2855 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 1.7199 -3.8102 -0.0019 11 6 0.3464 -4.0832 0.6374 12 6 -0.3639 -5.3136 0.0694 13 7 -1.6209 -5.5281 0.7904 14 6 -2.4200 -6.5616 0.4590 15 8 -2.0982 -7.3144 -0.4358 16 6 -3.7129 -6.7825 1.2012 17 1 -3.5280 -6.8904 2.2699 18 6 -4.7073 -5.6226 0.9339 19 6 -6.0810 -6.2784 1.2041 20 6 -5.8455 -7.7916 1.0423 21 7 -4.4257 -7.9724 0.6697 22 6 -3.8841 -9.2109 1.2448 23 6 -4.5984 -10.4148 0.6275 24 9 -4.5113 -10.3442 -0.7670 25 9 -3.9936 -11.5949 1.0733 26 9 -5.9436 -10.4063 1.0117 27 6 -0.1060 -2.7570 0.0001 28 1 -0.4849 0.8401 -0.0004 29 1 2.5617 -4.0328 0.6538 30 1 1.8331 -4.2363 -0.9988 31 1 0.3580 -4.0646 1.7272 32 1 0.2758 -6.1884 0.1861 33 1 -0.5741 -5.1557 -0.9885 34 1 -1.8786 -4.9258 1.5059 35 1 -4.6375 -5.2856 -0.1003 36 1 -4.5323 -4.7961 1.6227 37 1 -6.8158 -5.9302 0.4782 38 1 -6.4149 -6.0537 2.2171 39 1 -6.0503 -8.3020 1.9834 40 1 -6.4915 -8.1861 0.2580 41 1 -2.8167 -9.2736 1.0327 42 1 -4.0405 -9.2094 2.3235 43 1 -0.5313 -2.8713 -0.9969 44 1 -0.7189 -2.1404 0.6575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032207117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:12 Heat of formation + Delta-G solvation = -125.558635 kcal Electronic energy + Delta-G solvation = -29468.853569 eV Core-core repulsion = 24815.098463 eV Total energy + Delta-G solvation = -4653.755105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.28305 -47.87145 -47.65907 -40.38117 -38.57898 -37.69448 -34.46197 -33.27624 -32.19683 -30.25106 -28.54345 -28.24669 -25.86547 -24.81952 -23.66879 -22.80270 -21.78832 -21.29297 -20.28673 -19.09261 -18.75185 -18.60509 -17.64115 -17.27482 -16.73895 -16.40661 -15.78374 -15.34053 -15.03016 -14.79743 -14.73049 -14.59696 -14.26597 -14.22229 -14.08458 -13.94967 -13.85242 -13.72744 -13.61584 -13.13769 -13.04543 -12.83813 -12.43115 -12.13283 -11.96260 -11.65302 -11.58950 -11.42821 -11.34476 -11.01558 -10.98864 -10.74811 -10.60684 -10.04057 -9.79164 -9.69403 -9.45389 -8.98663 -8.84512 -8.81340 -6.90669 -5.79684 -3.11656 2.42200 2.65796 2.89998 3.37682 3.41842 3.42874 3.43931 3.57416 3.79493 4.11706 4.21710 4.33637 4.43084 4.56482 4.70348 4.73945 4.80014 4.98091 5.07807 5.15014 5.28072 5.28877 5.34369 5.44939 5.52180 5.62787 5.70861 5.79796 5.80777 6.00751 6.16505 6.22971 6.30849 6.33397 6.53121 6.61540 6.72584 7.18417 7.32265 7.51549 7.62057 7.95405 8.31648 9.02139 9.68262 10.57174 11.37497 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.002192 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.428584 B =12771.215723 C =13546.397382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.132 3.868 13 N -0.721 5.721 14 C 0.517 3.483 15 O -0.523 6.523 16 C 0.049 3.951 17 H 0.084 0.916 18 C -0.112 4.112 19 C -0.128 4.128 20 C 0.026 3.974 21 N -0.487 5.487 22 C 0.003 3.997 23 C 0.460 3.540 24 F -0.167 7.167 25 F -0.185 7.185 26 F -0.187 7.187 27 C 0.169 3.831 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 -18.468 6.971 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.173 4.173 12 C 0.008 3.992 13 N -0.372 5.372 14 C 0.301 3.699 15 O -0.399 6.399 16 C -0.063 4.063 17 H 0.102 0.898 18 C -0.150 4.150 19 C -0.167 4.167 20 C -0.101 4.101 21 N -0.212 5.212 22 C -0.128 4.128 23 C 0.405 3.595 24 F -0.148 7.148 25 F -0.166 7.166 26 F -0.169 7.169 27 C 0.044 3.956 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.196 -18.730 5.725 23.616 hybrid contribution 0.183 1.007 0.973 1.413 sum -13.012 -17.723 6.698 22.984 Atomic orbital electron populations 1.69799 1.05001 1.25432 1.56730 1.24778 0.95701 0.97520 1.02492 0.86196 0.78487 0.83106 0.77945 1.21180 1.21551 1.21097 1.18988 0.90269 0.82032 1.43795 0.90323 1.45980 1.02476 0.99284 1.86171 1.22483 0.93980 0.86472 0.96901 1.23801 0.98234 0.94777 1.00476 1.21450 0.83419 0.97930 0.96425 1.46023 1.22453 1.29952 1.38812 1.20097 0.84434 0.81288 0.84081 1.90722 1.73427 1.45571 1.30132 1.22793 0.93764 0.91880 0.97830 0.89848 1.22507 0.92649 0.95794 1.04076 1.22406 0.97771 0.93873 1.02602 1.23192 0.88859 0.97239 1.00811 1.64336 1.02545 0.99405 1.54885 1.23430 1.02444 0.88529 0.98353 1.20319 0.77129 0.84472 0.77573 1.93242 1.95857 1.96317 1.29392 1.93187 1.83267 1.50867 1.89287 1.93164 1.35997 1.96671 1.91022 1.22343 0.88077 0.88398 0.96768 0.93623 0.93712 0.94645 0.89273 0.92005 0.91343 0.76501 0.89523 0.89333 0.90159 0.90788 0.92650 0.89232 0.85650 0.90220 0.95496 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 11.39 55.49 0.63 -26.16 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 9 N -0.61 -15.38 3.70 -177.71 -0.66 -16.04 16 10 C 0.13 2.51 8.51 -2.97 -0.03 2.49 16 11 C -0.15 -2.59 3.93 -89.70 -0.35 -2.94 16 12 C 0.13 1.92 5.51 -4.04 -0.02 1.90 16 13 N -0.72 -8.79 5.55 -60.29 -0.33 -9.12 16 14 C 0.52 6.61 6.98 -10.98 -0.08 6.53 16 15 O -0.52 -8.81 15.82 5.56 0.09 -8.72 16 16 C 0.05 0.45 2.71 -66.84 -0.18 0.27 16 17 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 18 C -0.11 -0.90 6.51 -24.78 -0.16 -1.06 16 19 C -0.13 -0.86 6.92 -25.37 -0.18 -1.03 16 20 C 0.03 0.21 5.09 -2.75 -0.01 0.19 16 21 N -0.49 -4.89 4.41 -223.88 -0.99 -5.88 16 22 C 0.00 0.02 4.69 -3.82 -0.02 0.00 16 23 C 0.46 4.59 3.18 37.16 0.12 4.71 16 24 F -0.17 -2.09 17.13 2.25 0.04 -2.05 16 25 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 26 F -0.19 -1.77 14.73 2.25 0.03 -1.74 16 27 C 0.17 3.76 7.08 -2.84 -0.02 3.74 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.12 7.88 -51.92 -0.41 0.71 16 34 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 35 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.37 7.01 -51.93 -0.36 0.01 16 40 H 0.09 0.76 7.77 -51.93 -0.40 0.36 16 41 H 0.13 1.24 7.40 -51.93 -0.38 0.85 16 42 H 0.08 0.50 7.95 -51.93 -0.41 0.09 16 43 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 44 H 0.07 1.74 7.16 -51.93 -0.37 1.37 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -33.24 368.98 -8.24 -41.48 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.44 Total: -0.45 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.19 Total: 8.10 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -1.35 Total: -57.20 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.11 Total: -5.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.24 -8.24 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.075 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds