Wall clock time and date at job start Tue Mar 31 2020 18:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00606 * 2 1 4 4 H 1.48496 * 109.47661 * 240.00071 * 3 2 1 5 5 H 1.48502 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47381 * 119.99675 * 3 2 1 7 7 C 1.38813 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49355 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11662 * 155.35235 * 10 9 7 12 12 C 1.53005 * 113.74081 * 137.95144 * 11 10 9 13 13 N 1.46494 * 109.47289 * 176.92710 * 12 11 10 14 14 C 1.34782 * 120.00158 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99764 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.59979 * 303.01211 * 16 14 13 18 18 C 1.55102 * 110.82491 * 66.03648 * 16 14 13 19 19 C 1.54599 * 102.84362 * 155.84695 * 18 16 14 20 20 C 1.54001 * 105.22468 * 338.14759 * 19 18 16 21 21 N 1.47896 * 107.05937 * 358.72932 * 20 19 18 22 22 C 1.46901 * 111.00226 * 145.84204 * 21 20 19 23 23 C 1.52999 * 109.46822 * 65.15252 * 22 21 20 24 24 F 1.39901 * 109.47357 * 54.12318 * 23 22 21 25 25 F 1.39901 * 109.46851 * 174.12028 * 23 22 21 26 26 F 1.39895 * 109.47058 * 294.12058 * 23 22 21 27 27 C 1.47818 * 134.45333 * 359.86211 * 9 7 2 28 28 H 0.96998 * 119.99426 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.77398 * 41.05829 * 10 9 7 30 30 H 1.09001 * 113.87032 * 269.66775 * 10 9 7 31 31 H 1.08998 * 113.74806 * 269.15153 * 11 10 9 32 32 H 1.09000 * 109.46901 * 56.92449 * 12 11 10 33 33 H 1.09010 * 109.46787 * 296.92676 * 12 11 10 34 34 H 0.97003 * 120.00026 * 0.02562 * 13 12 11 35 35 H 1.08996 * 110.71116 * 37.53998 * 18 16 14 36 36 H 1.08997 * 110.80890 * 274.19526 * 18 16 14 37 37 H 1.09005 * 110.31117 * 219.18913 * 19 18 16 38 38 H 1.08999 * 110.31468 * 97.11480 * 19 18 16 39 39 H 1.08999 * 109.91458 * 118.08089 * 20 19 18 40 40 H 1.08997 * 109.91602 * 239.17321 * 20 19 18 41 41 H 1.09003 * 109.47009 * 185.15461 * 22 21 20 42 42 H 1.08994 * 109.47116 * 305.14941 * 22 21 20 43 43 H 1.09000 * 113.76523 * 90.38820 * 27 9 7 44 44 H 1.08993 * 113.83477 * 318.92018 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2855 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 1.7199 -3.8102 -0.0019 11 6 0.3464 -4.0832 0.6374 12 6 -0.3639 -5.3136 0.0694 13 7 -1.6209 -5.5281 0.7904 14 6 -2.4200 -6.5616 0.4590 15 8 -2.0982 -7.3144 -0.4358 16 6 -3.7129 -6.7825 1.2012 17 1 -3.5280 -6.8904 2.2699 18 6 -4.7073 -5.6226 0.9339 19 6 -6.0810 -6.2784 1.2041 20 6 -5.8455 -7.7916 1.0423 21 7 -4.4257 -7.9724 0.6697 22 6 -3.8841 -9.2109 1.2448 23 6 -4.5984 -10.4148 0.6275 24 9 -4.5113 -10.3442 -0.7670 25 9 -3.9936 -11.5949 1.0733 26 9 -5.9436 -10.4063 1.0117 27 6 -0.1060 -2.7570 0.0001 28 1 -0.4849 0.8401 -0.0004 29 1 2.5617 -4.0328 0.6538 30 1 1.8331 -4.2363 -0.9988 31 1 0.3580 -4.0646 1.7272 32 1 0.2758 -6.1884 0.1861 33 1 -0.5741 -5.1557 -0.9885 34 1 -1.8786 -4.9258 1.5059 35 1 -4.6375 -5.2856 -0.1003 36 1 -4.5323 -4.7961 1.6227 37 1 -6.8158 -5.9302 0.4782 38 1 -6.4149 -6.0537 2.2171 39 1 -6.0503 -8.3020 1.9834 40 1 -6.4915 -8.1861 0.2580 41 1 -2.8167 -9.2736 1.0327 42 1 -4.0405 -9.2094 2.3235 43 1 -0.5313 -2.8713 -0.9969 44 1 -0.7189 -2.1404 0.6575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032207117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:11 Heat of formation + Delta-G solvation = -148.921742 kcal Electronic energy + Delta-G solvation = -29469.866669 eV Core-core repulsion = 24815.098463 eV Total energy + Delta-G solvation = -4654.768206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.08071 -48.63873 -48.51920 -41.27507 -39.89765 -38.87556 -35.70114 -34.23757 -33.84829 -31.26304 -29.95397 -28.96280 -27.44629 -26.51929 -24.53996 -23.95940 -23.03922 -21.92114 -21.37666 -20.45378 -19.54890 -19.46545 -18.74845 -18.42781 -18.09171 -17.29465 -16.96095 -16.72703 -16.25173 -15.91586 -15.69757 -15.51623 -15.42440 -15.11257 -15.02138 -14.95563 -14.73755 -14.70432 -14.51840 -14.45146 -14.28614 -13.92640 -13.46429 -13.28544 -13.08783 -12.93440 -12.82861 -12.62546 -12.53747 -12.34570 -12.21357 -12.17186 -11.81443 -11.58191 -11.53620 -11.24430 -10.85684 -10.72709 -9.99215 -9.63081 -8.90107 -7.89507 -5.22335 1.46540 1.49489 1.55494 1.66041 1.69504 2.04707 2.48590 2.61940 2.83800 3.06144 3.31165 3.38735 3.42581 3.54491 3.63090 3.78432 3.95206 4.04536 4.10941 4.12976 4.20170 4.31022 4.39167 4.47762 4.63544 4.71362 4.80281 4.87418 4.88776 4.91258 5.01451 5.11234 5.13057 5.24215 5.27609 5.47409 5.54774 5.58155 5.68334 5.70731 5.96228 6.65256 6.94159 7.33354 7.62223 8.58100 9.27098 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.002192 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.428584 B =12771.215723 C =13546.397382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.646 5.646 10 C 0.124 3.876 11 C -0.112 4.112 12 C 0.144 3.856 13 N -0.713 5.713 14 C 0.516 3.484 15 O -0.568 6.568 16 C 0.056 3.944 17 H 0.119 0.881 18 C -0.112 4.112 19 C -0.121 4.121 20 C 0.027 3.973 21 N -0.516 5.516 22 C 0.007 3.993 23 C 0.459 3.541 24 F -0.187 7.187 25 F -0.186 7.186 26 F -0.183 7.183 27 C 0.167 3.833 28 H 0.249 0.751 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.414 0.586 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.009 0.991 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 -18.933 9.005 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.373 5.373 10 C -0.001 4.001 11 C -0.131 4.131 12 C 0.019 3.981 13 N -0.365 5.365 14 C 0.302 3.698 15 O -0.446 6.446 16 C -0.055 4.055 17 H 0.136 0.864 18 C -0.150 4.150 19 C -0.159 4.159 20 C -0.100 4.100 21 N -0.242 5.242 22 C -0.123 4.123 23 C 0.404 3.596 24 F -0.168 7.168 25 F -0.168 7.168 26 F -0.165 7.165 27 C 0.042 3.958 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.027 0.973 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.362 -19.215 7.784 24.665 hybrid contribution 0.244 1.083 0.288 1.147 sum -13.118 -18.132 8.072 23.791 Atomic orbital electron populations 1.69979 1.06288 1.25652 1.58121 1.25603 0.96622 1.00753 1.03012 0.85170 0.77189 0.78884 0.78189 1.20755 1.21966 1.20024 1.19390 0.90834 0.83536 1.42801 0.90066 1.46421 1.03945 1.00644 1.86264 1.22698 0.95982 0.83574 0.97883 1.23382 0.95989 0.92884 1.00891 1.21127 0.84578 0.97016 0.95330 1.45898 1.21642 1.30219 1.38777 1.20765 0.85240 0.80282 0.83497 1.90706 1.74598 1.47131 1.32209 1.22800 0.91737 0.92105 0.98856 0.86390 1.22531 0.93296 0.96089 1.03098 1.22402 0.96791 0.92720 1.04016 1.23206 0.87402 0.98237 1.01146 1.64218 1.03705 0.99911 1.56324 1.23423 1.01393 0.87496 0.99976 1.20540 0.77415 0.84930 0.76690 1.93200 1.95984 1.96429 1.31220 1.93181 1.83311 1.51120 1.89158 1.93166 1.35792 1.96680 1.90846 1.22260 0.86804 0.90954 0.95801 0.94247 0.92015 0.93894 0.87473 0.90779 0.93428 0.74994 0.92102 0.87323 0.90236 0.88381 0.90921 0.90475 0.86857 0.86918 0.97344 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 11.39 21.65 0.25 -56.01 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -13.20 10.70 84.03 0.90 -12.30 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.65 -32.43 3.70 -716.15 -2.65 -35.09 16 10 C 0.12 4.71 8.51 86.49 0.74 5.44 16 11 C -0.11 -3.63 3.93 -10.14 -0.04 -3.67 16 12 C 0.14 4.04 5.51 86.38 0.48 4.51 16 13 N -0.71 -16.22 5.55 -463.04 -2.57 -18.79 16 14 C 0.52 12.56 6.98 87.66 0.61 13.17 16 15 O -0.57 -19.06 15.82 -3.03 -0.05 -19.11 16 16 C 0.06 0.90 2.71 44.57 0.12 1.02 16 17 H 0.12 1.13 8.02 -2.39 -0.02 1.11 16 18 C -0.11 -1.58 6.51 31.86 0.21 -1.37 16 19 C -0.12 -1.31 6.92 31.48 0.22 -1.09 16 20 C 0.03 0.37 5.09 86.45 0.44 0.81 16 21 N -0.52 -9.54 4.41 -862.23 -3.80 -13.34 16 22 C 0.01 0.11 4.69 86.30 0.40 0.52 16 23 C 0.46 8.73 3.18 71.98 0.23 8.96 16 24 F -0.19 -4.72 17.13 44.97 0.77 -3.95 16 25 F -0.19 -3.59 17.32 44.97 0.78 -2.81 16 26 F -0.18 -3.22 14.73 44.97 0.66 -2.56 16 27 C 0.17 7.49 7.08 86.43 0.61 8.10 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.56 7.88 -2.38 -0.02 1.54 16 34 H 0.41 7.39 8.47 -92.71 -0.79 6.60 16 35 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.73 7.01 -2.39 -0.02 0.72 16 40 H 0.08 1.23 7.77 -2.39 -0.02 1.21 16 41 H 0.11 2.11 7.40 -2.39 -0.02 2.10 16 42 H 0.11 1.02 7.95 -2.39 -0.02 1.01 16 43 H 0.01 0.42 7.92 -2.39 -0.02 0.40 16 44 H 0.05 2.34 7.16 -2.39 -0.02 2.32 16 Total: -1.00 -73.64 368.98 1.03 -72.61 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.24 Total: 11.06 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.38 Total: 20.80 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -8.78 Total: -123.24 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 2.21 Total: -9.32 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.64 1.03 -72.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.312 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds